RLG00000015877

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000987
Physical Location & Seq
Forward (+)
2032092 .. 2034336
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015877

Sequence Viewer

Length: 1464 bp
ATGGGAACCTTTACGTCCTTAAAATCCCGAGCTCCCTCGTATGTACTTGTACCAACTATTCTTTTCCTTCTTCTGATCACCACCTACTTCACTCTCGTACTCCAAAACCAGAACTACCATATCACTGATATAATTTTCTTCAATAACATCCCGGCACAAGTTGCTAACATATCCATCCTAAGCCCTAAACCTGCACCCGATACTCTAAATGATCTGCAGAATTTGAAGCAGAAGAATCATCCACATGAGCATCAACATGGCAGCCCTCCACCATTTGTTCCGACTAAAAAAAAAGCAAAGAGTCTGTTGGAGAAGAAGGAAGAAGGTTTGGCTGAAGCACGAGCCGCTATATACAAAGCAGCCCGGACTCGGAATTATACATCAGATAAAGAAGAGTCCTTCATTCCCAGGGGAAACATATACAGGAATGCTTATGCGTTTCATCAGAGTCATATCGAGATGATAAAGAGGTTCAAGGTGTGGAGTTACAAGGAAGGACAACTTCCCTTGACCCATGTCGGGCCAATGGATTGCATATACTCCATCGAAGGTCATTTTATCGACGAAATGGGAAATGGGAAAAGCCCCTTCATGGCTCAACATCATGATGAGGCTCATGTATATTTTCTTCCTGTGAGTGTGGTCAACATTGTGAAGTACATCTACATGCCGGTCACCGACTGGCATCGTGCTCGGATGGTACGGGTGGTCAAAGATTACGTCAATCTTATAGCAGACAGGTACCCACACTGGAATAGAAGCAAAGGAGCCGACCACTTTATGCTGTCTTGTCATGATTGGGCACCAGGAGTTACTAAAGATGATCCTGAGCTCTATGCGAACTTGATGAGGGTACTATGCAATGCCAACACCTCTGAAGGATTCAAACCAATCAGAGATGTTTCTGTACCAGAATACAACATTTTAGACAAACTGAAGCTCAACTCTTTCTCTCTTGGCCAACCACCTGATAAGCGCTCAATACTCGGCTTTTTCGCTGGTGGTCGAGCTCATGGAGACATAAGACCATTGCTATTCGAACACTGGGAAAATAAAGATGCTGAAATTCTAGTGTACGAGAAGGTTCCAAAGGAGCTCGACTACAATAAGTTGATGGAACAGAGCAAGTTTTGCTTTTGCCCTAGTGGTTGGGAAGTGGCAAGTCCTAGGATTATCGAATCACTTCAGTCGGGATGTGTTCCAGTGATCATTGCGGACAATTACGAATTGCCCTTTAACGATGTGCTCAATTGGAGCAAGTTTTCGCTTTTCATCCCGTCGAGTAGAATACCAGAAATAAAGACCATCTTGAAGGGAGTTTCAGATCAAAAGTACTTGAAGATGCAGCAGAGGGTGATGAAAGTGAGAAGGCATTTTGAGCTCAACCGACCTGCTAAGCCTTTTGACGTGATTCATATGGTGCTTCACTCGGTTTGGCTCAGAAGGCTTAACGTCAAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

488

Amino Acids

56.27

Weight (kDa)

9.17

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 163 - 438 4.8e-56 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 199, 1399
Acc65I GGTACC 1 cut(s) 741
AccB1I GGYRCC 2 cut(s) 741, 802
AciI CCGC 2 cut(s) 345, 1214
AclWI GGATC 1 cut(s) 818
AcoI YGGCCR 1 cut(s) 958
AcsI RAATTY 2 cut(s) 220, 1065
AcuI CTGAAG 4 cut(s) 354, 897, 956, 1169
AfeI AGCGCT 1 cut(s) 977
AfiI CCNNNNNNNGG 3 cut(s) 369, 519, 592
AgsI TTSAA 6 cut(s) 142, 226, 475, 886, 1312, 1339
AjiI CACGTC 1 cut(s) 1408
AjnI CCWGG 2 cut(s) 407, 805
AluBI AGCT 6 cut(s) 32, 832, 940, 1010, 1096, 1381
AluI AGCT 6 cut(s) 32, 832, 940, 1010, 1096, 1381
Alw21I GWGCWC 7 cut(s) 34, 694, 834, 1012, 1098, 1248, 1383
Alw26I GTCTC 1 cut(s) 1011
AlwI GGATC 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 27
Aor51HI AGCGCT 1 cut(s) 977
AoxI GGCC 2 cut(s) 521, 958
ApeKI GCWGC 3 cut(s) 261, 359, 1345
ApoI RAATTY 2 cut(s) 220, 1065
ArsI GACNNNNNNTTYG 2 cut(s) 705, 737
Asp700I GAANNNNTTC 1 cut(s) 1182
Asp718I GGTACC 1 cut(s) 741
AspA2I CCTAGG 1 cut(s) 1166
AspLEI GCGC 1 cut(s) 978
AspS9I GGNCC 1 cut(s) 521
AsuC2I CCSGG 2 cut(s) 152, 364
AsuHPI GGTGA 3 cut(s) 70, 667, 1366
AsuII TTCGAA 1 cut(s) 1038
AvaI CYCGRG 1 cut(s) 27
AvrII CCTAGG 1 cut(s) 1166
BaeGI GKGCMC 1 cut(s) 805
BalI TGGCCA 1 cut(s) 960
BanI GGYRCC 2 cut(s) 741, 802
BanII GRGCYC 5 cut(s) 34, 834, 1012, 1098, 1383
BarI GAAGNNNNNNTAC 4 cut(s) 612, 644, 647, 679
BauI CACGAG 1 cut(s) 339
Bbv12I GWGCWC 7 cut(s) 34, 694, 834, 1012, 1098, 1248, 1383
BbvI GCAGC 3 cut(s) 273, 371, 1357
BccI CCATC 5 cut(s) 182, 551, 691, 1108, 1313
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciT130I CCWGG 2 cut(s) 409, 807
BclI TGATCA 2 cut(s) 75, 1206
BcnI CCSGG 2 cut(s) 152, 364
BcoDI GTCTC 1 cut(s) 1011
BfaI CTAG 3 cut(s) 1070, 1143, 1167
BfmI CTRYAG 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 979
BfuAI ACCTGC 2 cut(s) 199, 1399
BisI GCNGC 4 cut(s) 262, 345, 360, 1346
BlnI CCTAGG 1 cut(s) 1166
BlpI GCTNAGC 1 cut(s) 1395
BlsI GCNGC 4 cut(s) 263, 346, 361, 1347
BmcAI AGTACT 1 cut(s) 1334
Bme1390I CCNGG 4 cut(s) 152, 364, 409, 807
BmeT110I CYCGRG 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 1408
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 5 cut(s) 7, 743, 769, 804, 1086
BmrFI CCNGG 4 cut(s) 152, 364, 409, 807
BmrI ACTGGG 1 cut(s) 1054
BmsI GCATC 4 cut(s) 259, 694, 1048, 1332
BmuI ACTGGG 1 cut(s) 1054
BoxI GACNNNNGTC 1 cut(s) 515
Bpu10I CCTNAGC 2 cut(s) 179, 828
Bpu1102I GCTNAGC 1 cut(s) 1395
Bpu14I TTCGAA 1 cut(s) 1038
BpuMI CCSGG 2 cut(s) 152, 364
BsaJI CCNNGG 3 cut(s) 407, 408, 1166
Bsc4I CCNNNNNNNGG 3 cut(s) 369, 519, 592
Bse118I RCCGGY 1 cut(s) 670
Bse1I ACTGG 4 cut(s) 686, 755, 1049, 1202
Bse3DI GCAATG 3 cut(s) 868, 1028, 1209
BseBI CCWGG 2 cut(s) 409, 807
BseDI CCNNGG 3 cut(s) 407, 408, 1166
BseGI GGATG 6 cut(s) 147, 174, 238, 702, 1199, 1272
BseLI CCNNNNNNNGG 3 cut(s) 369, 519, 592
BseMI GCAATG 3 cut(s) 868, 1028, 1209
BseMII CTCAG 2 cut(s) 819, 1453
BseNI ACTGG 4 cut(s) 686, 755, 1049, 1202
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 3 cut(s) 273, 371, 1357
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 2 cut(s) 523, 960
BshNI GGYRCC 2 cut(s) 741, 802
BsiHKAI GWGCWC 7 cut(s) 34, 694, 834, 1012, 1098, 1248, 1383
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 3 cut(s) 152, 364, 671
BslI CCNNNNNNNGG 3 cut(s) 369, 519, 592
BsmAI GTCTC 1 cut(s) 1011
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 523, 960
BsoBI CYCGRG 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 1038
Bsp1286I GDGCHC 8 cut(s) 34, 694, 805, 834, 1012, 1098, 1248, 1383
Bsp143I GATC 5 cut(s) 75, 211, 823, 1206, 1324
Bsp1720I GCTNAGC 1 cut(s) 1395
BspACI CCGC 2 cut(s) 345, 1214
BspANI GGCC 2 cut(s) 523, 960
BspCNI CTCAG 2 cut(s) 820, 1452
BspHI TCATGA 2 cut(s) 604, 793
BspLI GGNNCC 5 cut(s) 7, 743, 769, 804, 1086
BspMAI CTGCAG 1 cut(s) 219
BspMI ACCTGC 2 cut(s) 199, 1399
BspPI GGATC 1 cut(s) 818
BspT104I TTCGAA 1 cut(s) 1038
BspT107I GGYRCC 2 cut(s) 741, 802
BsrDI GCAATG 3 cut(s) 868, 1028, 1209
BsrFI RCCGGY 1 cut(s) 670
BsrI ACTGG 4 cut(s) 686, 755, 1049, 1202
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 3 cut(s) 407, 408, 1166
BssMI GATC 5 cut(s) 75, 211, 823, 1206, 1324
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 1166
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 409, 807
Bst6I CTCTTC 1 cut(s) 387
BstAPI GCANNNNNTGC 2 cut(s) 161, 1131
BstBI TTCGAA 1 cut(s) 1038
BstDEI CTNAG 4 cut(s) 179, 828, 1395, 1439
BstEII GGTNACC 1 cut(s) 673
BstF5I GGATG 6 cut(s) 147, 174, 238, 702, 1199, 1272
BstH2I RGCGCY 1 cut(s) 979
BstHHI GCGC 1 cut(s) 978
BstKTI GATC 5 cut(s) 78, 214, 826, 1209, 1327
BstMAI GTCTC 1 cut(s) 1011
BstMBI GATC 5 cut(s) 75, 211, 823, 1206, 1324
BstMWI GCNNNNNNNGC 5 cut(s) 161, 344, 1131, 1378, 1444
BstNI CCWGG 2 cut(s) 409, 807
BstNSI RCATGY 1 cut(s) 670
BstPAI GACNNNNGTC 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 673
BstSCI CCNGG 4 cut(s) 150, 362, 407, 805
BstSFI CTRYAG 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 3 cut(s) 273, 371, 1357
BsuRI GGCC 2 cut(s) 523, 960
BtrI CACGTC 1 cut(s) 1408
BtsCI GGATG 6 cut(s) 147, 174, 238, 702, 1199, 1272
BtsIMutI CAGTG 4 cut(s) 123, 748, 1042, 1209
BveI ACCTGC 2 cut(s) 199, 1399
CciI TCATGA 2 cut(s) 604, 793
CfoI GCGC 1 cut(s) 978
Cfr10I RCCGGY 1 cut(s) 670
Cfr13I GGNCC 1 cut(s) 521
CviAII CATG 9 cut(s) 245, 257, 515, 592, 605, 617, 667, 794, 1013
DdeI CTNAG 4 cut(s) 179, 828, 1395, 1439
DpnI GATC 5 cut(s) 77, 213, 825, 1208, 1326
DpnII GATC 5 cut(s) 75, 211, 823, 1206, 1324
EaeI YGGCCR 1 cut(s) 958
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 5 cut(s) 32, 832, 1010, 1096, 1381
Eco130I CCWWGG 1 cut(s) 1166
Eco24I GRGCYC 5 cut(s) 34, 834, 1012, 1098, 1383
Eco47III AGCGCT 1 cut(s) 977
Eco53kI GAGCTC 5 cut(s) 32, 832, 1010, 1096, 1381
Eco57I CTGAAG 4 cut(s) 354, 897, 956, 1169
Eco88I CYCGRG 1 cut(s) 27
Eco91I GGTNACC 1 cut(s) 673
EcoICRI GAGCTC 5 cut(s) 32, 832, 1010, 1096, 1381
EcoO65I GGTNACC 1 cut(s) 673
EcoRII CCWGG 2 cut(s) 407, 805
EcoT14I CCWWGG 1 cut(s) 1166
EcoT38I GRGCYC 5 cut(s) 34, 834, 1012, 1098, 1383
ErhI CCWWGG 1 cut(s) 1166
FaeI CATG 9 cut(s) 248, 260, 518, 595, 608, 620, 670, 797, 1016
FalI AAGNNNNNCTT 6 cut(s) 486, 518, 1118, 1150, 1292, 1324
FatI CATG 9 cut(s) 244, 256, 514, 591, 604, 616, 666, 793, 1012
FauNDI CATATG 1 cut(s) 1416
FbaI TGATCA 2 cut(s) 75, 1206
Fnu4HI GCNGC 4 cut(s) 262, 345, 360, 1346
FokI GGATG 6 cut(s) 134, 161, 225, 709, 1206, 1259
FriOI GRGCYC 5 cut(s) 34, 834, 1012, 1098, 1383
Fsp4HI GCNGC 4 cut(s) 262, 345, 360, 1346
FspBI CTAG 3 cut(s) 1070, 1143, 1167
GlaI GCGC 1 cut(s) 977
GluI GCNGC 4 cut(s) 262, 345, 360, 1346
HaeII RGCGCY 1 cut(s) 979
HaeIII GGCC 2 cut(s) 523, 960
HapII CCGG 3 cut(s) 152, 364, 671
HhaI GCGC 1 cut(s) 978
Hin1II CATG 9 cut(s) 248, 260, 518, 595, 608, 620, 670, 797, 1016
Hin6I GCGC 1 cut(s) 976
HinP1I GCGC 1 cut(s) 976
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 8 cut(s) 235, 301, 367, 395, 448, 882, 1178, 1411
HpaII CCGG 3 cut(s) 152, 364, 671
HphI GGTGA 3 cut(s) 70, 667, 1366
Hpy166II GTNNAC 2 cut(s) 646, 1075
Hpy188III TCNNGA 7 cut(s) 27, 457, 605, 794, 827, 1191, 1309
Hpy8I GTNNAC 2 cut(s) 646, 1075
Hpy99I CGWCG 2 cut(s) 566, 1282
HpyCH4IV ACGT 4 cut(s) 14, 720, 1407, 1452
HpyCH4V TGCA 5 cut(s) 194, 217, 534, 861, 1345
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 344, 1131, 1378, 1444
HpyF3I CTNAG 4 cut(s) 179, 828, 1395, 1439
HpySE526I ACGT 4 cut(s) 14, 720, 1407, 1452
Hsp92II CATG 9 cut(s) 248, 260, 518, 595, 608, 620, 670, 797, 1016
HspAI GCGC 1 cut(s) 976
KpnI GGTACC 1 cut(s) 745
Ksp22I TGATCA 2 cut(s) 75, 1206
Kzo9I GATC 5 cut(s) 75, 211, 823, 1206, 1324
LmnI GCTCC 4 cut(s) 37, 767, 1093, 1254
Lsp1109I GCAGC 3 cut(s) 273, 371, 1357
LweI GCATC 4 cut(s) 259, 694, 1048, 1332
MaeI CTAG 3 cut(s) 1070, 1143, 1167
MaeII ACGT 4 cut(s) 14, 720, 1407, 1452
MaeIII GTNAC 3 cut(s) 485, 673, 811
MalI GATC 5 cut(s) 77, 213, 825, 1208, 1326
MboI GATC 5 cut(s) 75, 211, 823, 1206, 1324
MboII GAAGA 8 cut(s) 62, 130, 244, 325, 332, 404, 620, 1351
MfeI CAATTG 1 cut(s) 1249
MhlI GDGCHC 8 cut(s) 34, 694, 805, 834, 1012, 1098, 1248, 1383
MlsI TGGCCA 1 cut(s) 960
MluCI AATT 7 cut(s) 132, 220, 373, 1065, 1219, 1226, 1249
MluNI TGGCCA 1 cut(s) 960
MlyI GAGTC 4 cut(s) 310, 361, 404, 457
MmeI TCCRAC 2 cut(s) 288, 305
MnlI CCTC 7 cut(s) 46, 276, 462, 604, 843, 883, 1344
Mox20I TGGCCA 1 cut(s) 960
MroXI GAANNNNTTC 1 cut(s) 1182
MscI TGGCCA 1 cut(s) 960
MseI TTAA 3 cut(s) 20, 1236, 1449
MslI CAYNNNNRTG 4 cut(s) 243, 255, 606, 665
Msp20I TGGCCA 1 cut(s) 960
MspI CCGG 3 cut(s) 152, 364, 671
MspR9I CCNGG 4 cut(s) 152, 364, 409, 807
MunI CAATTG 1 cut(s) 1249
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 2 cut(s) 409, 807
MwoI GCNNNNNNNGC 5 cut(s) 161, 344, 1131, 1378, 1444
NciI CCSGG 2 cut(s) 152, 364
NdeI CATATG 1 cut(s) 1416
NdeII GATC 5 cut(s) 75, 211, 823, 1206, 1324
NlaIII CATG 9 cut(s) 248, 260, 518, 595, 608, 620, 670, 797, 1016
NlaIV GGNNCC 5 cut(s) 7, 743, 769, 804, 1086
NmeAIII GCCGAG 1 cut(s) 966
NmuCI GTSAC 1 cut(s) 673
NspI RCATGY 1 cut(s) 670
NspV TTCGAA 1 cut(s) 1038
PagI TCATGA 2 cut(s) 604, 793
PasI CCCWGGG 1 cut(s) 408
PctI GAATGC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 1182
PfeI GAWTC 4 cut(s) 235, 882, 1178, 1411
PkrI GCNGC 4 cut(s) 263, 346, 361, 1347
PleI GAGTC 4 cut(s) 309, 361, 403, 456
PpsI GAGTC 4 cut(s) 309, 361, 403, 456
PshAI GACNNNNGTC 1 cut(s) 515
Psp124BI GAGCTC 5 cut(s) 34, 834, 1012, 1098, 1383
Psp6I CCWGG 2 cut(s) 407, 805
PspEI GGTNACC 1 cut(s) 673
PspGI CCWGG 2 cut(s) 407, 805
PspN4I GGNNCC 5 cut(s) 7, 743, 769, 804, 1086
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 1 cut(s) 219
RseI CAYNNNNRTG 4 cut(s) 243, 255, 606, 665
SacI GAGCTC 5 cut(s) 34, 834, 1012, 1098, 1383
SaqAI TTAA 3 cut(s) 20, 1236, 1449
SatI GCNGC 4 cut(s) 262, 345, 360, 1346
Sau3AI GATC 5 cut(s) 75, 211, 823, 1206, 1324
Sau96I GGNCC 1 cut(s) 521
ScaI AGTACT 1 cut(s) 1334
SchI GAGTC 4 cut(s) 310, 361, 404, 457
ScrFI CCNGG 4 cut(s) 152, 364, 409, 807
SduI GDGCHC 8 cut(s) 34, 694, 805, 834, 1012, 1098, 1248, 1383
SfaNI GCATC 4 cut(s) 259, 694, 1048, 1332
SfcI CTRYAG 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 1038
SmiMI CAYNNNNRTG 4 cut(s) 243, 255, 606, 665
Sse9I AATT 7 cut(s) 132, 220, 373, 1065, 1219, 1226, 1249
SsiI CCGC 2 cut(s) 345, 1214
SspMI CTAG 3 cut(s) 1070, 1143, 1167
SstI GAGCTC 5 cut(s) 34, 834, 1012, 1098, 1383
StyD4I CCNGG 4 cut(s) 150, 362, 407, 805
StyI CCWWGG 1 cut(s) 1166
TaiI ACGT 4 cut(s) 17, 723, 1410, 1455
TaqI TCGA 8 cut(s) 456, 546, 561, 1006, 1038, 1098, 1176, 1280
TasI AATT 7 cut(s) 132, 220, 373, 1065, 1219, 1226, 1249
TatI WGTACW 3 cut(s) 43, 657, 1332
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 4 cut(s) 235, 882, 1178, 1411
Tru1I TTAA 3 cut(s) 20, 1236, 1449
Tru9I TTAA 3 cut(s) 20, 1236, 1449
TscAI CASTG 4 cut(s) 130, 755, 1049, 1209
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 3 cut(s) 261, 359, 1345
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 6 cut(s) 391, 431, 580, 1261, 1373, 1403
TspRI CASTG 4 cut(s) 130, 755, 1049, 1209
XapI RAATTY 2 cut(s) 220, 1065
XceI RCATGY 1 cut(s) 670
XmaJI CCTAGG 1 cut(s) 1166
XmnI GAANNNNTTC 1 cut(s) 1182
XspI CTAG 3 cut(s) 1070, 1143, 1167
ZrmI AGTACT 1 cut(s) 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.