Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000987

Physical Location & Seq

Genomic Coordinates Forward (+)

31924734 .. 31928159

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1242600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCCTTTCATCAGTGAAGAGTCATGTAGAGATGGTGAAGAGGTTCAAGATATGGAGTTACAAGGAGATTTGCCAATGGTTCACAATGGGCCCGCCACATACATCTACTCCATAGAAGGGCAATTTATATTCGAGATGGAAAGTGGGCCAAGCCCATTTGCACCAATTATCCCAAGTGATGACCCGAGACCGTACAAGAATCTCATGAAGGTGTTATGCAACACAAACACCTCTGCAGGATTCAAGCCTACTAGAGACGTCTCATTGCTAGAATATAACCTAAAAGCCTTTGACCTTGGGCCACCACGCCTCGGAGAACCCCCAGACAAGTGTCCACTCCTTGCCTTCTTTGCCGATGCTGCTCTTGGAGAAATCAGAAGCATTCTGTTTGGGCATGGGAAGGAAAAAGATGATGAAGTTCGAGTTTACGAAAAGCTCCCTAGGGACCTGAACTACCACAAACTAATGGGACAAACCAAGTTCTGCTTGTGCCCAAGTGGGTCTGAAGTGGCAAGTCTTAGAGTTGTGGAGGCAATGCATGCAGGGTGTGTCCTGGTGTTGATTTCTGACTACTATGCAGTACCATTTGATGATGTTCTTGATTGGAGCAAGTTTTCGATACAAATTCCGTCCAAGAGAATATCAGAAATCAAGACAATACTGAAAGCTGTTCCTTACTCAAGGTACTTGAAATTGCAGAAGAGGGTGATGCAAGTAAAAAGGCACTTTGAGCTCAAGCGAACAGCTAAGCCCTATGGCGTATTTCACATCGTGCTCCACTCGATATGGCTTAGAAGGCTCAACATTCGGTTACCAGATCGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

276

Amino Acids

31.43

Weight (kDa)

7.62

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	64 - 223	1.8e-25	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42180 AT3G42180
fragaria_vesca	FvH4_1g02510 FvH4_1g02510 FvH4_1g02511 FvH4_1g02520 FvH4_1g02520 FvH4_6g00700 FvH4_6g00700 FvH4_6g00700
malus_domestica	MD02G1022600.v1.1 MD04G1242600.v1.1 MD04G1243200.v1.1 MD04G1243300.v1.1 MD04G1243400.v1.1 MD15G1165200.v1.1 MD15G1165300.v1.1
prunus_persica	Prupe.6G359500_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.7G249500_v2.0.a1 Prupe.7G249600_v2.0.a1 Prupe.7G249600_v2.0.a1
pyrus_communis	pycom04g21420
rosa_chinensis	RchiOBHm_Chr2g0087521 RchiOBHm_Chr2g0087541 RchiOBHm_Chr2g0087551 RchiOBHm_Chr3g0448141 RchiOBHm_Chr3g0448161
rosa_laevigata	RLG00000015875 RLG00000015876 RLG00000015877 RLG00000025942 RLG00000025943
rosa_multiflora	Rmu_sc0002299.1_g000012 Rmu_sc0002299.1_g000014 Rmu_sc0002299.1_g000020 Rmu_sc0005969.1_g000031
rosa_roxburghii	Rroxscaffold_2G00153480 Rroxscaffold_6G00426270 Rroxscaffold_6G00426300
rosa_rugosa	Rorug01G0476400 Rorug01G0476400 Rorug01G0476400 Rorug02G0608400 Rorug02G0608400 Rorug02G0608500
rosa_samantha	Rh2AG029600 Rh2AG029700 Rh2AG029800 Rh2BG029700 Rh2BG029800 Rh3BG007800 Rh3BG007900 Rh3CG007800 Rh3CG008000 Rh3DG008200
rosa_wichuraiana	Rw2G002350 Rw2G002360 Rw2G002370 Rw3G000650 Rw3G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AciI	CCGC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	624
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	258
AdeI	CACNNNGTG	1 cut(s)	772
AfaI	GTAC	3 cut(s)	194, 582, 686
AfiI	CCNNNNNNNGG	2 cut(s)	117, 311
AgsI	TTSAA	3 cut(s)	47, 244, 691
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	4 cut(s)	436, 668, 733, 746
AluI	AGCT	4 cut(s)	436, 668, 733, 746
Alw21I	GWGCWC	2 cut(s)	735, 777
Alw26I	GTCTC	3 cut(s)	181, 249, 265
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	3 cut(s)	89, 146, 299
ApaI	GGGCCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	42
AspA2I	CCTAGG	1 cut(s)	440
AspS9I	GGNCC	5 cut(s)	89, 90, 146, 299, 445
AsuHPI	GGTGA	2 cut(s)	47, 718
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	445
AvrII	CCTAGG	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	93, 494
BanII	GRGCYC	2 cut(s)	93, 735
Bbv12I	GWGCWC	2 cut(s)	735, 777
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	26, 130
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	3 cut(s)	181, 249, 265
BfaI	CTAG	3 cut(s)	252, 269, 441
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	360
BlnI	CCTAGG	1 cut(s)	440
BlpI	GCTNAGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	5 cut(s)	89, 90, 146, 299, 445
BmiI	GGNNCC	2 cut(s)	91, 446
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	2 cut(s)	346, 699
BoxI	GACNNNNGTC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	664, 719
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	295, 310, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 311
Bse3DI	GCAATG	2 cut(s)	263, 540
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	3 cut(s)	295, 310, 440
BseLI	CCNNNNNNNGG	2 cut(s)	117, 311
BseMI	GCAATG	2 cut(s)	263, 540
BseSI	GKGCMC	2 cut(s)	93, 494
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	3 cut(s)	91, 148, 301
BsiHKAI	GWGCWC	2 cut(s)	735, 777
BsiHKCI	CYCGRG	1 cut(s)	184
BslFI	GGGAC	2 cut(s)	458, 483
BslI	CCNNNNNNNGG	2 cut(s)	117, 311
BsmAI	GTCTC	3 cut(s)	181, 249, 265
BsmBI	CGTCTC	2 cut(s)	249, 265
BsmFI	GGGAC	2 cut(s)	458, 483
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	3 cut(s)	91, 148, 301
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	184
Bsp120I	GGGCCC	1 cut(s)	89
Bsp1286I	GDGCHC	4 cut(s)	93, 494, 735, 777
Bsp143I	GATC	1 cut(s)	817
Bsp1720I	GCTNAGC	1 cut(s)	747
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	3 cut(s)	91, 148, 301
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	91, 446
BspMAI	CTGCAG	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	2 cut(s)	263, 540
BssECI	CCNNGG	3 cut(s)	295, 310, 440
BssMI	GATC	1 cut(s)	817
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	295, 440
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	3 cut(s)	12, 33, 695
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	93, 540
BstDEI	CTNAG	3 cut(s)	518, 747, 791
BstEII	GGTNACC	1 cut(s)	810
BstKTI	GATC	1 cut(s)	820
BstMAI	GTCTC	3 cut(s)	181, 249, 265
BstMBI	GATC	1 cut(s)	817
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 359, 539, 730, 796
BstNI	CCWGG	1 cut(s)	554
BstNSI	RCATGY	1 cut(s)	542
BstPAI	GACNNNNGTC	1 cut(s)	330
BstPI	GGTNACC	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	2 cut(s)	93, 494
BstV1I	GCAGC	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	91, 148, 301
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	93, 540
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	5 cut(s)	89, 90, 146, 299, 445
Csp6I	GTAC	3 cut(s)	193, 581, 685
CviAII	CATG	4 cut(s)	24, 205, 395, 539
CviQI	GTAC	3 cut(s)	193, 581, 685
DdeI	CTNAG	3 cut(s)	518, 747, 791
DpnI	GATC	1 cut(s)	819
DpnII	GATC	1 cut(s)	817
DraIII	CACNNNGTG	1 cut(s)	772
Eam1104I	CTCTTC	3 cut(s)	12, 33, 695
EarI	CTCTTC	3 cut(s)	12, 33, 695
Ecl136II	GAGCTC	1 cut(s)	733
Eco130I	CCWWGG	2 cut(s)	295, 440
Eco24I	GRGCYC	2 cut(s)	93, 735
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	445
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	810
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	2 cut(s)	295, 440
EcoT22I	ATGCAT	1 cut(s)	540
EcoT38I	GRGCYC	2 cut(s)	93, 735
ErhI	CCWWGG	2 cut(s)	295, 440
Esp3I	CGTCTC	2 cut(s)	249, 265
FaeI	CATG	4 cut(s)	27, 208, 398, 542
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	458, 483
FatI	CATG	4 cut(s)	23, 204, 394, 538
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	360
FriOI	GRGCYC	2 cut(s)	93, 735
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	3 cut(s)	252, 269, 441
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	91, 148, 301
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	4 cut(s)	27, 208, 398, 542
HinfI	GANTC	3 cut(s)	20, 199, 240
HphI	GGTGA	2 cut(s)	47, 718
Hpy166II	GTNNAC	3 cut(s)	82, 335, 427
Hpy188I	TCNGA	5 cut(s)	314, 377, 505, 568, 646
Hpy188III	TCNNGA	5 cut(s)	47, 133, 205, 599, 652
Hpy8I	GTNNAC	3 cut(s)	82, 335, 427
HpyAV	CCTTC	5 cut(s)	110, 202, 355, 394, 789
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	8 cut(s)	161, 219, 236, 538, 542, 578, 697, 712
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 359, 539, 730, 796
HpyF3I	CTNAG	3 cut(s)	518, 747, 791
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	27, 208, 398, 542
Kzo9I	GATC	1 cut(s)	817
LmnI	GCTCC	3 cut(s)	441, 606, 780
LpnPI	CCDG	6 cut(s)	222, 336, 461, 528, 539, 566
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	346, 699
MaeI	CTAG	3 cut(s)	252, 269, 441
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	57, 810
MalI	GATC	1 cut(s)	819
MboI	GATC	1 cut(s)	817
MboII	GAAGA	3 cut(s)	29, 50, 712
MhlI	GDGCHC	4 cut(s)	93, 494, 735, 777
MluCI	AATT	4 cut(s)	122, 165, 624, 692
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	5 cut(s)	34, 241, 320, 523, 696
Mph1103I	ATGCAT	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	554
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	5 cut(s)	350, 359, 539, 730, 796
NdeII	GATC	1 cut(s)	817
NlaIII	CATG	4 cut(s)	27, 208, 398, 542
NlaIV	GGNNCC	2 cut(s)	91, 446
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	542
PagI	TCATGA	1 cut(s)	204
PctI	GAATGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	199, 240
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	445
PshAI	GACNNNNGTC	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	552
PspEI	GGTNACC	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	91, 446
PspOMI	GGGCCC	1 cut(s)	89
PspPI	GGNCC	5 cut(s)	89, 90, 146, 299, 445
PspPPI	RGGWCCY	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	238
RsaI	GTAC	3 cut(s)	194, 582, 686
RsaNI	GTAC	3 cut(s)	193, 581, 685
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	735
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	817
Sau96I	GGNCC	5 cut(s)	89, 90, 146, 299, 445
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	4 cut(s)	93, 494, 735, 777
SfaNI	GCATC	2 cut(s)	346, 699
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	679, 734
SmoI	CTYRAG	2 cut(s)	679, 734
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	4 cut(s)	122, 165, 624, 692
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	3 cut(s)	252, 269, 441
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	2 cut(s)	295, 440
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	4 cut(s)	132, 421, 617, 782
TasI	AATT	4 cut(s)	122, 165, 624, 692
TfiI	GAWTC	2 cut(s)	199, 240
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	221, 429
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	1 cut(s)	624
XceI	RCATGY	1 cut(s)	542
XmaJI	CCTAGG	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	3 cut(s)	252, 269, 441
ZraI	GACGTC	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.