Rh3DG008200

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000987
Physical Location & Seq
Reverse (-)
530060 .. 536229
6170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG008200.1

Sequence Viewer

Length: 1464 bp
ATGGCAGCCTTTGAATTCCGATCACCATATTTACTCTCTCTAACCTTTCTCCTCCTCCTCCTTCTCGTCCTTTCCTTCTCACCCTTTAACAAAAGCAGTTTCAGTCTTATCAATCTTTCTTTTTCTTCTTCTTCTAAAACCCCATCTGTTCCTCTACACAGTAATCTTACCAGTTCAAACCAATATGTCTCACCCTCACCTTCACAGTCACAGTCACAGTCACCCTCACCTTCACAGTCACAGCCGCCCTTTCCTTCTCCTACTTCCATTGTGGCAGACCATGTCAAAGAAAAAAGCAATACGAGCAAGATTGAGGAACAATTGGCCAGAGCAAGAGCAGCTATCCACAAAGCAGTTCTTACAAAGAACTATACATCTGATAGACAAGAGATTTACATCCCCAGAGGAAGTGTGTACAGAAATCCCTATGCATTTCATCAGAGTCACATAGAGATGGTAAAAAGATTCAAGATATGGGCATACAAGGAAGGGGAGATACCCATGTTCCATAATGGACCAATGTCATACATCTACTCCATAGAAGGGCAGTTCATGGATGAGCTGGATAGTAGTGGGAAAAGTCCATTTCTGGCTCGCCATCTTCATGAGGCACATTCATTCTTCGTACCAGTAAGTGTGAAAAGGATTGCTGATTTCTTGTATGATCGGCCTAAACCTCACACTTTTCACGGTCGCTTGGTTCGTATCGTCACTGACTATATCAATGTGGTAGCTCAAAAATATCCCTACTGGAATAGGAGCGAGGGAGCTGACCATTTTATGGTCTCTTGTCATGATTGGGCACCAGAAATAATAAATGATGATCTTAAGTTCTACAAGAATTTCATAAGAGTACTTTGCAATGCTAACATATCCGAAGGATTCCAGCCTGGGAGAGACGTCTCGTTGCCAGAATATAACTTGGCCAGTGGCACTCTTGGTCCATCACGCCTTGACTCACACCCTGATGAGCGTCCTATCCTGGCCTTCTTTGCGGGCGGTGCTCATGGTGACATAAGGAAGTTTTTATTTGAGCATTGGAGGGACAAAGATGAGGAAATCCAAGTCCATGAGTATCTTCCAAAGGGTCAAAATTATCACCAAATAATGGGACAAACAAAGTTTTGCTTGTGTCCAAGTGGGACTGAAGTTGCTAGTCCTAGAGTCGTTGAAGCAATGTATGCAGGATGTGTTCCGGTGCTTATTTCTGATTATTATGCATTACCCTTTGGCGATGTTCTTGATTGGCGCAAGTTTACAATAGAAATTCCACCAAAGAGAATACCAGAAATTAAGACGATATTGAAAGCTGTTTCGCATGCAGAATACTTGAAATTGCAGAAGAGGGTGATGCAAGTGAGACGGCATTTTGAGCTGAACCGGCCTGCTAAGCCATTTGATGTGTTTCACATGGTGCTTCACTCAATTTGGCTGAGGAGGCTAAACATTAGACTACCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

487

Amino Acids

55.95

Weight (kDa)

9.01

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 138 - 437 2.1e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 903
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 2 cut(s) 781, 1108
AciI CCGC 3 cut(s) 245, 995, 999
AcoI YGGCCR 2 cut(s) 324, 924
AcsI RAATTY 3 cut(s) 14, 841, 1266
AcuI CTGAAG 1 cut(s) 1167
AcyI GRCGYC 1 cut(s) 900
AdeI CACNNNGTG 1 cut(s) 1414
AfaI GTAC 3 cut(s) 416, 627, 855
AfiI CCNNNNNNNGG 3 cut(s) 543, 781, 1108
AflII CTTAAG 1 cut(s) 827
AgsI TTSAA 6 cut(s) 14, 177, 469, 1172, 1306, 1333
AjnI CCWGG 2 cut(s) 889, 981
AluBI AGCT 6 cut(s) 341, 562, 734, 770, 1310, 1375
AluI AGCT 6 cut(s) 341, 562, 734, 770, 1310, 1375
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 5 cut(s) 193, 790, 891, 907, 1354
AoxI GGCC 5 cut(s) 324, 668, 924, 984, 1382
ApeKI GCWGC 2 cut(s) 5, 338
ApoI RAATTY 3 cut(s) 14, 841, 1266
AspLEI GCGC 1 cut(s) 1251
AspS9I GGNCC 2 cut(s) 515, 941
AsuHPI GGTGA 9 cut(s) 15, 72, 183, 189, 213, 219, 1022, 1091, 1360
AvaII GGWCC 2 cut(s) 515, 941
BaeGI GKGCMC 1 cut(s) 805
BaeI ACNNNNGTAYC 2 cut(s) 488, 521
BalI TGGCCA 2 cut(s) 326, 926
BanI GGYRCC 1 cut(s) 802
BarI GAAGNNNNNNTAC 2 cut(s) 480, 512
Bbv12I GWGCWC 1 cut(s) 1006
BbvCI CCTCAGC 1 cut(s) 1433
BbvI GCAGC 2 cut(s) 17, 350
BccI CCATC 4 cut(s) 151, 448, 606, 952
BceAI ACGGC 1 cut(s) 1379
BciT130I CCWGG 2 cut(s) 891, 983
BcoDI GTCTC 5 cut(s) 193, 790, 891, 907, 1354
BfaI CTAG 2 cut(s) 1155, 1161
BfrI CTTAAG 1 cut(s) 827
BisI GCNGC 3 cut(s) 6, 245, 339
BlpI GCTNAGC 1 cut(s) 1389
BlsI GCNGC 3 cut(s) 7, 246, 340
BmcAI AGTACT 1 cut(s) 855
Bme1390I CCNGG 2 cut(s) 891, 983
Bme18I GGWCC 2 cut(s) 515, 941
BmgT120I GGNCC 2 cut(s) 515, 941
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 2 cut(s) 891, 983
BmsI GCATC 1 cut(s) 1341
BoxI GACNNNNGTC 1 cut(s) 520
Bpu10I CCTNAGC 1 cut(s) 1433
Bpu1102I GCTNAGC 1 cut(s) 1389
BsaBI GATNNNNATC 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 900
BsaI GGTCTC 1 cut(s) 790
BsaJI CCNNGG 1 cut(s) 890
BsaWI WCCGGW 1 cut(s) 1195
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 3 cut(s) 543, 781, 1108
Bse118I RCCGGY 1 cut(s) 1380
Bse1I ACTGG 4 cut(s) 171, 629, 755, 927
Bse3DI GCAATG 2 cut(s) 868, 1182
Bse8I GATNNNNATC 1 cut(s) 395
BseBI CCWGG 2 cut(s) 891, 983
BseDI CCNNGG 1 cut(s) 890
BseGI GGATG 3 cut(s) 396, 562, 1193
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 3 cut(s) 543, 781, 1108
BseMI GCAATG 2 cut(s) 868, 1182
BseMII CTCAG 1 cut(s) 1424
BseNI ACTGG 4 cut(s) 171, 629, 755, 927
BseRI GAGGAG 4 cut(s) 41, 44, 47, 1450
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 2 cut(s) 17, 350
Bsh1285I CGRYCG 1 cut(s) 694
BshFI GGCC 5 cut(s) 326, 670, 926, 986, 1384
BshNI GGYRCC 1 cut(s) 802
BsiEI CGRYCG 1 cut(s) 694
BsiHKAI GWGCWC 1 cut(s) 1006
BsiSI CCGG 2 cut(s) 1196, 1381
BslFI GGGAC 3 cut(s) 1058, 1125, 1156
BslI CCNNNNNNNGG 3 cut(s) 543, 781, 1108
BsmAI GTCTC 5 cut(s) 193, 790, 891, 907, 1354
BsmBI CGTCTC 3 cut(s) 891, 907, 1354
BsmFI GGGAC 3 cut(s) 1058, 1125, 1156
BsnI GGCC 5 cut(s) 326, 670, 926, 986, 1384
Bso31I GGTCTC 1 cut(s) 790
Bsp1286I GDGCHC 2 cut(s) 805, 1006
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 3 cut(s) 20, 664, 823
Bsp1720I GCTNAGC 1 cut(s) 1389
BspACI CCGC 3 cut(s) 245, 995, 999
BspANI GGCC 5 cut(s) 326, 670, 926, 986, 1384
BspCNI CTCAG 1 cut(s) 1425
BspHI TCATGA 2 cut(s) 604, 793
BspLI GGNNCC 1 cut(s) 804
BspT107I GGYRCC 1 cut(s) 802
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 790
BsrDI GCAATG 2 cut(s) 868, 1182
BsrFI RCCGGY 1 cut(s) 1380
BsrGI TGTACA 1 cut(s) 414
BsrI ACTGG 4 cut(s) 171, 629, 755, 927
BssAI RCCGGY 1 cut(s) 1380
BssECI CCNNGG 1 cut(s) 890
BssMI GATC 3 cut(s) 20, 664, 823
BssNI GRCGYC 1 cut(s) 900
Bst2UI CCWGG 2 cut(s) 891, 983
Bst4CI ACNGT 6 cut(s) 161, 207, 213, 219, 237, 692
Bst6I CTCTTC 1 cut(s) 1337
BstACI GRCGYC 1 cut(s) 900
BstAFI CTTAAG 1 cut(s) 827
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstAUI TGTACA 1 cut(s) 414
BstC8I GCNNGC 4 cut(s) 595, 997, 1320, 1386
BstDEI CTNAG 2 cut(s) 1389, 1433
BstF5I GGATG 3 cut(s) 396, 562, 1193
BstHHI GCGC 1 cut(s) 1251
BstKTI GATC 3 cut(s) 23, 667, 826
BstMAI GTCTC 5 cut(s) 193, 790, 891, 907, 1354
BstMBI GATC 3 cut(s) 20, 664, 823
BstMCI CGRYCG 1 cut(s) 694
BstMWI GCNNNNNNNGC 9 cut(s) 303, 338, 992, 1001, 1181, 1372, 1381, 1390, 1438
BstNI CCWGG 2 cut(s) 891, 983
BstNSI RCATGY 1 cut(s) 1322
BstPAI GACNNNNGTC 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 889, 981
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 2 cut(s) 17, 350
BsuRI GGCC 5 cut(s) 326, 670, 926, 986, 1384
BtgZI GCGATG 1 cut(s) 1248
BtsCI GGATG 3 cut(s) 396, 562, 1193
BtsIMutI CAGTG 2 cut(s) 711, 934
Cac8I GCNNGC 4 cut(s) 595, 997, 1320, 1386
CciI TCATGA 2 cut(s) 604, 793
CfoI GCGC 1 cut(s) 1251
Cfr10I RCCGGY 1 cut(s) 1380
Cfr13I GGNCC 2 cut(s) 515, 941
CseI GACGC 1 cut(s) 962
Csp6I GTAC 3 cut(s) 415, 626, 854
CviAII CATG 9 cut(s) 281, 502, 553, 605, 794, 1007, 1070, 1319, 1411
CviQI GTAC 3 cut(s) 415, 626, 854
DdeI CTNAG 2 cut(s) 1389, 1433
DpnI GATC 3 cut(s) 22, 666, 825
DpnII GATC 3 cut(s) 20, 664, 823
DraIII CACNNNGTG 1 cut(s) 1414
EaeI YGGCCR 2 cut(s) 324, 924
Eam1104I CTCTTC 1 cut(s) 1337
EarI CTCTTC 1 cut(s) 1337
Eco31I GGTCTC 1 cut(s) 790
Eco47I GGWCC 2 cut(s) 515, 941
Eco57I CTGAAG 1 cut(s) 1167
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 889, 981
EcoT22I ATGCAT 2 cut(s) 433, 1222
Esp3I CGTCTC 3 cut(s) 891, 907, 1354
FaeI CATG 9 cut(s) 284, 505, 556, 608, 797, 1010, 1073, 1322, 1414
FalI AAGNNNNNCTT 4 cut(s) 342, 374, 1112, 1144
FaqI GGGAC 3 cut(s) 1058, 1125, 1156
FatI CATG 9 cut(s) 280, 501, 552, 604, 793, 1006, 1069, 1318, 1410
FauI CCCGC 1 cut(s) 988
Fnu4HI GCNGC 3 cut(s) 6, 245, 339
FokI GGATG 3 cut(s) 383, 569, 1200
Fsp4HI GCNGC 3 cut(s) 6, 245, 339
FspBI CTAG 2 cut(s) 1155, 1161
GlaI GCGC 1 cut(s) 1250
GluI GCNGC 3 cut(s) 6, 245, 339
HaeIII GGCC 5 cut(s) 326, 670, 926, 986, 1384
HapII CCGG 2 cut(s) 1196, 1381
HgaI GACGC 1 cut(s) 962
HhaI GCGC 1 cut(s) 1251
Hin1I GRCGYC 1 cut(s) 900
Hin1II CATG 9 cut(s) 284, 505, 556, 608, 797, 1010, 1073, 1322, 1414
Hin6I GCGC 1 cut(s) 1249
HinP1I GCGC 1 cut(s) 1249
HinfI GANTC 5 cut(s) 442, 465, 882, 956, 1164
HpaII CCGG 2 cut(s) 1196, 1381
HphI GGTGA 9 cut(s) 15, 72, 183, 189, 213, 219, 1022, 1091, 1360
Hpy166II GTNNAC 2 cut(s) 415, 1257
Hpy188I TCNGA 5 cut(s) 20, 379, 441, 877, 1210
Hpy188III TCNNGA 4 cut(s) 469, 605, 794, 1241
Hpy8I GTNNAC 2 cut(s) 415, 1257
HpyAV CCTTC 9 cut(s) 71, 85, 210, 240, 264, 482, 536, 872, 997
HpyCH4III ACNGT 6 cut(s) 161, 207, 213, 219, 237, 692
HpyCH4IV ACGT 1 cut(s) 900
HpyCH4V TGCA 7 cut(s) 431, 861, 1184, 1220, 1322, 1339, 1354
HpyF10VI GCNNNNNNNGC 9 cut(s) 303, 338, 992, 1001, 1181, 1372, 1381, 1390, 1438
HpyF3I CTNAG 2 cut(s) 1389, 1433
HpySE526I ACGT 1 cut(s) 900
Hsp92I GRCGYC 1 cut(s) 900
Hsp92II CATG 9 cut(s) 284, 505, 556, 608, 797, 1010, 1073, 1322, 1414
HspAI GCGC 1 cut(s) 1249
Kzo9I GATC 3 cut(s) 20, 664, 823
LmnI GCTCC 2 cut(s) 759, 767
Lsp1109I GCAGC 2 cut(s) 17, 350
LweI GCATC 1 cut(s) 1341
MaeI CTAG 2 cut(s) 1155, 1161
MaeII ACGT 1 cut(s) 900
MaeIII GTNAC 7 cut(s) 207, 213, 219, 237, 443, 709, 1010
MalI GATC 3 cut(s) 22, 666, 825
MboI GATC 3 cut(s) 20, 664, 823
MboII GAAGA 7 cut(s) 117, 120, 123, 593, 613, 1070, 1354
MfeI CAATTG 1 cut(s) 320
MhlI GDGCHC 2 cut(s) 805, 1006
MlsI TGGCCA 2 cut(s) 326, 926
MluCI AATT 8 cut(s) 14, 320, 841, 1093, 1266, 1290, 1334, 1425
MluNI TGGCCA 2 cut(s) 326, 926
MlyI GAGTC 3 cut(s) 451, 950, 1173
Mox20I TGGCCA 2 cut(s) 326, 926
Mph1103I ATGCAT 2 cut(s) 433, 1222
MscI TGGCCA 2 cut(s) 326, 926
MseI TTAA 4 cut(s) 87, 828, 1293, 1462
MslI CAYNNNNRTG 3 cut(s) 452, 603, 966
Msp20I TGGCCA 2 cut(s) 326, 926
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 2 cut(s) 1196, 1381
MspR9I CCNGG 2 cut(s) 891, 983
MunI CAATTG 1 cut(s) 320
MvaI CCWGG 2 cut(s) 891, 983
MwoI GCNNNNNNNGC 9 cut(s) 303, 338, 992, 1001, 1181, 1372, 1381, 1390, 1438
NdeII GATC 3 cut(s) 20, 664, 823
NlaIII CATG 9 cut(s) 284, 505, 556, 608, 797, 1010, 1073, 1322, 1414
NlaIV GGNNCC 1 cut(s) 804
NmuCI GTSAC 7 cut(s) 207, 213, 219, 237, 443, 709, 1010
NsiI ATGCAT 2 cut(s) 433, 1222
NspI RCATGY 1 cut(s) 1322
PaeI GCATGC 1 cut(s) 1322
PagI TCATGA 2 cut(s) 604, 793
PcsI WCGNNNNNNNCGW 1 cut(s) 700
PfeI GAWTC 2 cut(s) 465, 882
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 2 cut(s) 781, 1108
PkrI GCNGC 3 cut(s) 7, 246, 340
PleI GAGTC 3 cut(s) 450, 950, 1172
PpsI GAGTC 3 cut(s) 450, 950, 1172
PshAI GACNNNNGTC 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 889, 981
PspGI CCWGG 2 cut(s) 889, 981
PspN4I GGNNCC 1 cut(s) 804
PspPI GGNCC 2 cut(s) 515, 941
PsyI GACNNNGTC 1 cut(s) 281
RsaI GTAC 3 cut(s) 416, 627, 855
RsaNI GTAC 3 cut(s) 415, 626, 854
RseI CAYNNNNRTG 3 cut(s) 452, 603, 966
SaqAI TTAA 4 cut(s) 87, 828, 1293, 1462
SatI GCNGC 3 cut(s) 6, 245, 339
Sau3AI GATC 3 cut(s) 20, 664, 823
Sau96I GGNCC 2 cut(s) 515, 941
ScaI AGTACT 1 cut(s) 855
SchI GAGTC 3 cut(s) 451, 950, 1173
ScrFI CCNGG 2 cut(s) 891, 983
SduI GDGCHC 2 cut(s) 805, 1006
SfaNI GCATC 1 cut(s) 1341
SinI GGWCC 2 cut(s) 515, 941
SmiMI CAYNNNNRTG 3 cut(s) 452, 603, 966
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SphI GCATGC 1 cut(s) 1322
Sse9I AATT 8 cut(s) 14, 320, 841, 1093, 1266, 1290, 1334, 1425
SsiI CCGC 3 cut(s) 245, 995, 999
SspMI CTAG 2 cut(s) 1155, 1161
StyD4I CCNGG 2 cut(s) 889, 981
TaaI ACNGT 6 cut(s) 161, 207, 213, 219, 237, 692
TaiI ACGT 1 cut(s) 903
TasI AATT 8 cut(s) 14, 320, 841, 1093, 1266, 1290, 1334, 1425
TatI WGTACW 2 cut(s) 414, 853
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 2 cut(s) 465, 882
Tru1I TTAA 4 cut(s) 87, 828, 1293, 1462
Tru9I TTAA 4 cut(s) 87, 828, 1293, 1462
TscAI CASTG 2 cut(s) 718, 934
TseFI GTSAC 7 cut(s) 207, 213, 219, 237, 443, 709, 1010
TseI GCWGC 2 cut(s) 5, 338
Tsp45I GTSAC 7 cut(s) 207, 213, 219, 237, 443, 709, 1010
TspDTI ATGAA 5 cut(s) 425, 541, 593, 606, 835
TspRI CASTG 2 cut(s) 718, 934
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 2 cut(s) 781, 1108
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 515, 941
XapI RAATTY 3 cut(s) 14, 841, 1266
XceI RCATGY 1 cut(s) 1322
XspI CTAG 2 cut(s) 1155, 1161
ZraI GACGTC 1 cut(s) 901
ZrmI AGTACT 1 cut(s) 855
Zsp2I ATGCAT 2 cut(s) 433, 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.