Rroxscaffold_6G00426270

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000987
Physical Location & Seq
Reverse (-)
47063028 .. 47065633
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426270.1

Sequence Viewer

Length: 1458 bp
ATGGCAGCCTTTGAATTCCGATCACCATATTTACTCTCTCTAACCTTTCTCCTCCTCCTTCTTCTCGTCCTTTCCTTCTCACCCTTTAACAAAAGCAGTTTCAGTCTCATCAATCTTTCTTCTTCTTCTTCTAAAACCCCATCTGTTCCTCTACACAGTAATCTTACCAGTTCAAACCAATATGTCTCACCCTCACCTTCACAGTCACATTCACGGTCACAGTCACGGTTACAGCCACCCTTTCCTTCTCCTCCTACTTCCATTGTGGCAGACCATGTCAAAGAAAAAAGCAATACAAGCAAGATTGAGGAACAATTGGCCAGAGCAAGAGCAGCTATCCACAAAGCAGTTCTTACAAAGAACTATACATCTGACAGACAAGAGATTTACATCCCCAGAGGAAGTGTGTACAGAAATCCCTATGCATTTCATCAGAGTCACATAGAGATGGTAAAAAGATTCAAGATATGGGCATACAAGGAAGGGGAGATACCCATGTTCCATAATGGACCAATGTCATACATCTACTCCATAGAAGGGCAGTTCATGGATGAGCTGGATAGTAGTGGGAAAAGTCCATTTCTGGCTCGCCATCTTCATGAGGCACATTCATTCTTCGTACCAGTAAGTGTGAAAAGGATTGCTGATTTCTTGTATGATCGGCCTAAACCTCACACTTTTCACGGTCGATTGGTTCGTATCGTCACTGACTATATCAATGTGTTAGCTCAAAAATATCCCTACTGGAATAGGAGCGAGGGAGCTGACCATTTTATGGTCTCTTGTCATGATTGGGCACCAGAAATAATAAATGATGATCTTAAGTTCTACAAGAATTTCATAAGAGTACTTTGCAATGCTAACATATCCGAAGGATTCCAGCCTGGGAGAGACGTCTCGTTGCCAGAATATAACTTGGCCAGTGGCACTCTTGGTCCATCACGCCTTGACTCACACCCTGATGAGCGTCCTATCCTGGCCTTCTTTGCGGGCGGTGCTCATGGTGACATAAGGAAGTTTTTATTTGAGCATTGGAGGGACAAAGATGAGGAAATCCAAGTCCATGAGTATCTTCCAAAGGGTCAAAATTATCACCAAATAATGGGACAAAGTAAGTTTTGCTTGTGTCCAAGTGGGACTGAAGTTGCTAGTCCTAGAGTGGTTGAAGCAATGTATGCAGGATGTGTTCCGGTGCTCATTTCTGATTATTATGCATTACCCTTTGGCGATGTTCTTGATTGGAGCAAGTTTACAATAGAAATTCCACCAAAGAGAATACCAGAAATTAAGACGATATTGAAAGCTGTTTCGCATGCAGAATACTTGAAATTGCAGAAGAGGGTGATGCAAGTGAGAAGGCATTTTGAGCTGAACCGGCCTGCTAAGCCATTTGATGTGTTTCACATGGTGCTTCACTCAATTTGGCTGAGGAGGCTAAACATTAGACTACCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

485

Amino Acids

55.77

Weight (kDa)

9.09

Isoelectric Point (pI)

61.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 136 - 435 2.8e-59 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 897
AccB1I GGYRCC 1 cut(s) 796
AccB7I CCANNNNNTGG 2 cut(s) 775, 1102
AciI CCGC 2 cut(s) 989, 993
AcoI YGGCCR 2 cut(s) 318, 918
AcsI RAATTY 3 cut(s) 14, 835, 1260
AcuI CTGAAG 1 cut(s) 1161
AcyI GRCGYC 1 cut(s) 894
AdeI CACNNNGTG 1 cut(s) 1408
AfaI GTAC 3 cut(s) 410, 621, 849
AfiI CCNNNNNNNGG 3 cut(s) 537, 775, 1102
AflII CTTAAG 1 cut(s) 821
AgsI TTSAA 6 cut(s) 14, 174, 463, 1166, 1300, 1327
AjnI CCWGG 2 cut(s) 883, 975
AluBI AGCT 6 cut(s) 335, 556, 728, 764, 1304, 1369
AluI AGCT 6 cut(s) 335, 556, 728, 764, 1304, 1369
Alw21I GWGCWC 2 cut(s) 1000, 1197
Alw26I GTCTC 5 cut(s) 110, 190, 784, 885, 901
AoxI GGCC 5 cut(s) 318, 662, 918, 978, 1376
ApeKI GCWGC 2 cut(s) 5, 332
ApoI RAATTY 3 cut(s) 14, 835, 1260
AspS9I GGNCC 2 cut(s) 509, 935
AsuHPI GGTGA 7 cut(s) 15, 72, 180, 186, 1016, 1085, 1354
AvaII GGWCC 2 cut(s) 509, 935
BaeGI GKGCMC 1 cut(s) 799
BaeI ACNNNNGTAYC 2 cut(s) 482, 515
BalI TGGCCA 2 cut(s) 320, 920
BanI GGYRCC 1 cut(s) 796
BarI GAAGNNNNNNTAC 2 cut(s) 474, 506
Bbv12I GWGCWC 2 cut(s) 1000, 1197
BbvCI CCTCAGC 1 cut(s) 1427
BbvI GCAGC 2 cut(s) 17, 344
BccI CCATC 4 cut(s) 148, 442, 600, 946
BciT130I CCWGG 2 cut(s) 885, 977
BcoDI GTCTC 5 cut(s) 110, 190, 784, 885, 901
BfaI CTAG 2 cut(s) 1149, 1155
BfrI CTTAAG 1 cut(s) 821
BisI GCNGC 2 cut(s) 6, 333
BlpI GCTNAGC 1 cut(s) 1383
BlsI GCNGC 2 cut(s) 7, 334
BmcAI AGTACT 1 cut(s) 849
Bme1390I CCNGG 2 cut(s) 885, 977
Bme18I GGWCC 2 cut(s) 509, 935
BmgT120I GGNCC 2 cut(s) 509, 935
BmiI GGNNCC 1 cut(s) 798
BmrFI CCNGG 2 cut(s) 885, 977
BmsI GCATC 1 cut(s) 1335
BoxI GACNNNNGTC 1 cut(s) 514
Bpu10I CCTNAGC 1 cut(s) 1427
Bpu1102I GCTNAGC 1 cut(s) 1383
BsaBI GATNNNNATC 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 894
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 1 cut(s) 884
BsaWI WCCGGW 1 cut(s) 1189
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 3 cut(s) 537, 775, 1102
Bse118I RCCGGY 1 cut(s) 1374
Bse1I ACTGG 4 cut(s) 168, 623, 749, 921
Bse3DI GCAATG 2 cut(s) 862, 1176
Bse8I GATNNNNATC 1 cut(s) 389
BseBI CCWGG 2 cut(s) 885, 977
BseDI CCNNGG 1 cut(s) 884
BseGI GGATG 3 cut(s) 390, 556, 1187
BseJI GATNNNNATC 1 cut(s) 389
BseLI CCNNNNNNNGG 3 cut(s) 537, 775, 1102
BseMI GCAATG 2 cut(s) 862, 1176
BseMII CTCAG 1 cut(s) 1418
BseNI ACTGG 4 cut(s) 168, 623, 749, 921
BseRI GAGGAG 4 cut(s) 41, 44, 240, 1444
BseSI GKGCMC 1 cut(s) 799
BseXI GCAGC 2 cut(s) 17, 344
Bsh1285I CGRYCG 1 cut(s) 688
BshFI GGCC 5 cut(s) 320, 664, 920, 980, 1378
BshNI GGYRCC 1 cut(s) 796
BsiEI CGRYCG 1 cut(s) 688
BsiHKAI GWGCWC 2 cut(s) 1000, 1197
BsiSI CCGG 2 cut(s) 1190, 1375
BslFI GGGAC 3 cut(s) 1052, 1119, 1150
BslI CCNNNNNNNGG 3 cut(s) 537, 775, 1102
BsmAI GTCTC 5 cut(s) 110, 190, 784, 885, 901
BsmBI CGTCTC 2 cut(s) 885, 901
BsmFI GGGAC 3 cut(s) 1052, 1119, 1150
BsnI GGCC 5 cut(s) 320, 664, 920, 980, 1378
Bso31I GGTCTC 1 cut(s) 784
Bsp1286I GDGCHC 3 cut(s) 799, 1000, 1197
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 3 cut(s) 20, 658, 817
Bsp1720I GCTNAGC 1 cut(s) 1383
BspACI CCGC 2 cut(s) 989, 993
BspANI GGCC 5 cut(s) 320, 664, 920, 980, 1378
BspCNI CTCAG 1 cut(s) 1419
BspHI TCATGA 2 cut(s) 598, 787
BspLI GGNNCC 1 cut(s) 798
BspT107I GGYRCC 1 cut(s) 796
BspTI CTTAAG 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 784
BsrDI GCAATG 2 cut(s) 862, 1176
BsrFI RCCGGY 1 cut(s) 1374
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 4 cut(s) 168, 623, 749, 921
BssAI RCCGGY 1 cut(s) 1374
BssECI CCNNGG 1 cut(s) 884
BssMI GATC 3 cut(s) 20, 658, 817
BssNI GRCGYC 1 cut(s) 894
Bst2UI CCWGG 2 cut(s) 885, 977
Bst4CI ACNGT 6 cut(s) 158, 204, 216, 222, 228, 686
Bst6I CTCTTC 1 cut(s) 1331
BstACI GRCGYC 1 cut(s) 894
BstAFI CTTAAG 1 cut(s) 821
BstAPI GCANNNNNTGC 1 cut(s) 1175
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 4 cut(s) 589, 991, 1314, 1380
BstDEI CTNAG 2 cut(s) 1383, 1427
BstF5I GGATG 3 cut(s) 390, 556, 1187
BstKTI GATC 3 cut(s) 23, 661, 820
BstMAI GTCTC 5 cut(s) 110, 190, 784, 885, 901
BstMBI GATC 3 cut(s) 20, 658, 817
BstMCI CGRYCG 1 cut(s) 688
BstMWI GCNNNNNNNGC 9 cut(s) 297, 332, 986, 995, 1175, 1366, 1375, 1384, 1432
BstNI CCWGG 2 cut(s) 885, 977
BstNSI RCATGY 1 cut(s) 1316
BstPAI GACNNNNGTC 1 cut(s) 514
BstSCI CCNGG 2 cut(s) 883, 975
BstSLI GKGCMC 1 cut(s) 799
BstV1I GCAGC 2 cut(s) 17, 344
BsuRI GGCC 5 cut(s) 320, 664, 920, 980, 1378
BtgZI GCGATG 1 cut(s) 1242
BtsCI GGATG 3 cut(s) 390, 556, 1187
BtsIMutI CAGTG 2 cut(s) 705, 928
Cac8I GCNNGC 4 cut(s) 589, 991, 1314, 1380
CciI TCATGA 2 cut(s) 598, 787
Cfr10I RCCGGY 1 cut(s) 1374
Cfr13I GGNCC 2 cut(s) 509, 935
CseI GACGC 1 cut(s) 956
Csp6I GTAC 3 cut(s) 409, 620, 848
CviAII CATG 9 cut(s) 275, 496, 547, 599, 788, 1001, 1064, 1313, 1405
CviQI GTAC 3 cut(s) 409, 620, 848
DdeI CTNAG 2 cut(s) 1383, 1427
DpnI GATC 3 cut(s) 22, 660, 819
DpnII GATC 3 cut(s) 20, 658, 817
DraIII CACNNNGTG 1 cut(s) 1408
EaeI YGGCCR 2 cut(s) 318, 918
Eam1104I CTCTTC 1 cut(s) 1331
EarI CTCTTC 1 cut(s) 1331
Eco31I GGTCTC 1 cut(s) 784
Eco47I GGWCC 2 cut(s) 509, 935
Eco57I CTGAAG 1 cut(s) 1161
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 883, 975
EcoT22I ATGCAT 2 cut(s) 427, 1216
Esp3I CGTCTC 2 cut(s) 885, 901
FaeI CATG 9 cut(s) 278, 499, 550, 602, 791, 1004, 1067, 1316, 1408
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 1106, 1138
FaqI GGGAC 3 cut(s) 1052, 1119, 1150
FatI CATG 9 cut(s) 274, 495, 546, 598, 787, 1000, 1063, 1312, 1404
FauI CCCGC 1 cut(s) 982
Fnu4HI GCNGC 2 cut(s) 6, 333
FokI GGATG 3 cut(s) 377, 563, 1194
Fsp4HI GCNGC 2 cut(s) 6, 333
FspBI CTAG 2 cut(s) 1149, 1155
GluI GCNGC 2 cut(s) 6, 333
HaeIII GGCC 5 cut(s) 320, 664, 920, 980, 1378
HapII CCGG 2 cut(s) 1190, 1375
HgaI GACGC 1 cut(s) 956
Hin1I GRCGYC 1 cut(s) 894
Hin1II CATG 9 cut(s) 278, 499, 550, 602, 791, 1004, 1067, 1316, 1408
HinfI GANTC 4 cut(s) 436, 459, 876, 950
HpaII CCGG 2 cut(s) 1190, 1375
HphI GGTGA 7 cut(s) 15, 72, 180, 186, 1016, 1085, 1354
Hpy166II GTNNAC 2 cut(s) 409, 1251
Hpy188I TCNGA 5 cut(s) 20, 373, 435, 871, 1204
Hpy188III TCNNGA 4 cut(s) 463, 599, 788, 1235
Hpy8I GTNNAC 2 cut(s) 409, 1251
HpyAV CCTTC 9 cut(s) 68, 85, 207, 255, 476, 530, 866, 991, 1350
HpyCH4III ACNGT 6 cut(s) 158, 204, 216, 222, 228, 686
HpyCH4IV ACGT 1 cut(s) 894
HpyCH4V TGCA 7 cut(s) 425, 855, 1178, 1214, 1316, 1333, 1348
HpyF10VI GCNNNNNNNGC 9 cut(s) 297, 332, 986, 995, 1175, 1366, 1375, 1384, 1432
HpyF3I CTNAG 2 cut(s) 1383, 1427
HpySE526I ACGT 1 cut(s) 894
Hsp92I GRCGYC 1 cut(s) 894
Hsp92II CATG 9 cut(s) 278, 499, 550, 602, 791, 1004, 1067, 1316, 1408
Kzo9I GATC 3 cut(s) 20, 658, 817
LmnI GCTCC 3 cut(s) 753, 761, 1242
Lsp1109I GCAGC 2 cut(s) 17, 344
LweI GCATC 1 cut(s) 1335
MaeI CTAG 2 cut(s) 1149, 1155
MaeII ACGT 1 cut(s) 894
MaeIII GTNAC 7 cut(s) 204, 216, 222, 228, 437, 703, 1004
MalI GATC 3 cut(s) 22, 660, 819
MboI GATC 3 cut(s) 20, 658, 817
MboII GAAGA 9 cut(s) 53, 111, 114, 117, 120, 587, 607, 1064, 1348
MfeI CAATTG 1 cut(s) 314
MhlI GDGCHC 3 cut(s) 799, 1000, 1197
MlsI TGGCCA 2 cut(s) 320, 920
MluCI AATT 8 cut(s) 14, 314, 835, 1087, 1260, 1284, 1328, 1419
MluNI TGGCCA 2 cut(s) 320, 920
MlyI GAGTC 2 cut(s) 445, 944
Mox20I TGGCCA 2 cut(s) 320, 920
Mph1103I ATGCAT 2 cut(s) 427, 1216
MscI TGGCCA 2 cut(s) 320, 920
MseI TTAA 4 cut(s) 87, 822, 1287, 1456
MslI CAYNNNNRTG 3 cut(s) 446, 597, 960
Msp20I TGGCCA 2 cut(s) 320, 920
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 2 cut(s) 1190, 1375
MspR9I CCNGG 2 cut(s) 885, 977
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 2 cut(s) 885, 977
MwoI GCNNNNNNNGC 9 cut(s) 297, 332, 986, 995, 1175, 1366, 1375, 1384, 1432
NdeII GATC 3 cut(s) 20, 658, 817
NlaIII CATG 9 cut(s) 278, 499, 550, 602, 791, 1004, 1067, 1316, 1408
NlaIV GGNNCC 1 cut(s) 798
NmuCI GTSAC 6 cut(s) 204, 216, 222, 437, 703, 1004
NsiI ATGCAT 2 cut(s) 427, 1216
NspI RCATGY 1 cut(s) 1316
PaeI GCATGC 1 cut(s) 1316
PagI TCATGA 2 cut(s) 598, 787
PcsI WCGNNNNNNNCGW 1 cut(s) 694
PfeI GAWTC 2 cut(s) 459, 876
PflFI GACNNNGTC 1 cut(s) 275
PflMI CCANNNNNTGG 2 cut(s) 775, 1102
PkrI GCNGC 2 cut(s) 7, 334
PleI GAGTC 2 cut(s) 444, 944
PpsI GAGTC 2 cut(s) 444, 944
PshAI GACNNNNGTC 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 883, 975
PspGI CCWGG 2 cut(s) 883, 975
PspN4I GGNNCC 1 cut(s) 798
PspPI GGNCC 2 cut(s) 509, 935
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 3 cut(s) 410, 621, 849
RsaNI GTAC 3 cut(s) 409, 620, 848
RseI CAYNNNNRTG 3 cut(s) 446, 597, 960
SaqAI TTAA 4 cut(s) 87, 822, 1287, 1456
SatI GCNGC 2 cut(s) 6, 333
Sau3AI GATC 3 cut(s) 20, 658, 817
Sau96I GGNCC 2 cut(s) 509, 935
ScaI AGTACT 1 cut(s) 849
SchI GAGTC 2 cut(s) 445, 944
ScrFI CCNGG 2 cut(s) 885, 977
SduI GDGCHC 3 cut(s) 799, 1000, 1197
SfaNI GCATC 1 cut(s) 1335
SinI GGWCC 2 cut(s) 509, 935
SmiMI CAYNNNNRTG 3 cut(s) 446, 597, 960
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
SphI GCATGC 1 cut(s) 1316
Sse9I AATT 8 cut(s) 14, 314, 835, 1087, 1260, 1284, 1328, 1419
SsiI CCGC 2 cut(s) 989, 993
SspMI CTAG 2 cut(s) 1149, 1155
StyD4I CCNGG 2 cut(s) 883, 975
TaaI ACNGT 6 cut(s) 158, 204, 216, 222, 228, 686
TaiI ACGT 1 cut(s) 897
TaqI TCGA 1 cut(s) 688
TasI AATT 8 cut(s) 14, 314, 835, 1087, 1260, 1284, 1328, 1419
TatI WGTACW 2 cut(s) 408, 847
TfiI GAWTC 2 cut(s) 459, 876
Tru1I TTAA 4 cut(s) 87, 822, 1287, 1456
Tru9I TTAA 4 cut(s) 87, 822, 1287, 1456
TscAI CASTG 2 cut(s) 712, 928
TseFI GTSAC 6 cut(s) 204, 216, 222, 437, 703, 1004
TseI GCWGC 2 cut(s) 5, 332
Tsp45I GTSAC 6 cut(s) 204, 216, 222, 437, 703, 1004
TspDTI ATGAA 5 cut(s) 419, 535, 587, 600, 829
TspRI CASTG 2 cut(s) 712, 928
Tth111I GACNNNGTC 1 cut(s) 275
Van91I CCANNNNNTGG 2 cut(s) 775, 1102
Vha464I CTTAAG 1 cut(s) 821
VpaK11BI GGWCC 2 cut(s) 509, 935
XapI RAATTY 3 cut(s) 14, 835, 1260
XceI RCATGY 1 cut(s) 1316
XspI CTAG 2 cut(s) 1149, 1155
ZraI GACGTC 1 cut(s) 895
ZrmI AGTACT 1 cut(s) 849
Zsp2I ATGCAT 2 cut(s) 427, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.