FvH4_6g00720

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011891
Physical Location & Seq
Forward (+)
409876 .. 412189
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00720.t2

Sequence Viewer

Length: 534 bp
ATGTGGAGTGTTGGGGCCTTGGACTCAATCACTTTAACAACACTAACTCCGTCGTTCAATCTGTTCGGAGCTTTGGCCAAACCACCCAATTGTTCTCTCCACGTTCACTACCCCTCTAGGCCTCTCCGAGCTCTTCCCACCTTCACTCTTTCAAATCAATCCTCCTCTTTCCGACCCAAGAGAGCTCTCTCTTTCCGATGCTCTGCCGCATTAACTCCAGAGCTGAAGAGTACGCTCGACAAAGTTGTTAATTCACACAAAGTGGTTTTGTTTATGAAGGGAACAAAGGACTTCCCGCAGTGTGGGTTTTCAAACACTGTCGTACAAATATTGAGGTCGTTGAATGTACCTTTCGAAACTATAAACATCCTAGAGAATGAGCTCTTGCGTCAGGGATTGAAGGAGTATTCCAGTTGGCCAACATTTCCTCAGCTTTATGTTGAAGGAGAGTTCTTTGGTGGTTGTGACATCACTGTTGATGCATACAAAAGCGGGGAGTTGCAAGAAGTACTGGAGAAGGCAATGTGCTCCTGA

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

8.28

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 88 - 151 7.8e-22 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54900
fragaria_vesca FvH4_6g00720 FvH4_6g00720
malus_domestica MD04G1241900.v1.1 MD12G1258800.v1.1
prunus_persica Prupe.6G359300_v2.0.a1 Prupe.6G359300_v2.0.a1
pyrus_communis pycom04g21340 pycom12g23730
rosa_chinensis RchiOBHm_Chr3g0448191
rosa_laevigata RLG00000025939
rosa_multiflora Rmu_sc0013667.1_g000004
rosa_roxburghii Rroxscaffold_6G00426330
rosa_rugosa Rorug02G0608500
rosa_samantha Rh3AG008700 Rh3BG008200 Rh3CG008300 Rh3DG008900
rosa_wichuraiana Rw3G000690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 207, 296, 492
AcoI YGGCCR 2 cut(s) 75, 416
AcuI CTGAAG 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 4 cut(s) 232, 324, 348, 510
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 6 cut(s) 58, 153, 312, 343, 400, 443
AluBI AGCT 6 cut(s) 71, 131, 185, 223, 382, 433
AluI AGCT 6 cut(s) 71, 131, 185, 223, 382, 433
Alw21I GWGCWC 4 cut(s) 133, 187, 384, 530
AoxI GGCC 4 cut(s) 15, 75, 119, 416
AspS9I GGNCC 1 cut(s) 15
AsuII TTCGAA 1 cut(s) 354
BalI TGGCCA 2 cut(s) 77, 418
BanII GRGCYC 3 cut(s) 133, 187, 384
Bbv12I GWGCWC 4 cut(s) 133, 187, 384, 530
BbvCI CCTCAGC 1 cut(s) 429
BfaI CTAG 2 cut(s) 117, 371
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 2 cut(s) 188, 469
BpmI CTGGAG 2 cut(s) 201, 533
Bpu10I CCTNAGC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 411, 516
Bse3DI GCAATG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 2 cut(s) 411, 516
BseRI GAGGAG 1 cut(s) 154
BshFI GGCC 4 cut(s) 17, 77, 121, 418
BsiHKAI GWGCWC 4 cut(s) 133, 187, 384, 530
BslI CCNNNNNNNGG 1 cut(s) 302
BsnI GGCC 4 cut(s) 17, 77, 121, 418
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 4 cut(s) 133, 187, 384, 530
BspACI CCGC 3 cut(s) 207, 296, 492
BspANI GGCC 4 cut(s) 17, 77, 121, 418
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 2 cut(s) 411, 516
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 319, 475
Bst6I CTCTTC 2 cut(s) 138, 221
BstBI TTCGAA 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 366
BsuRI GGCC 4 cut(s) 17, 77, 121, 418
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 3 cut(s) 305, 315, 471
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 377
Csp6I GTAC 4 cut(s) 231, 323, 347, 509
CviQI GTAC 4 cut(s) 231, 323, 347, 509
DdeI CTNAG 1 cut(s) 429
DraIII CACNNNGTG 1 cut(s) 262
EaeI YGGCCR 2 cut(s) 75, 416
Eam1104I CTCTTC 2 cut(s) 138, 221
EarI CTCTTC 2 cut(s) 138, 221
Ecl136II GAGCTC 3 cut(s) 131, 185, 382
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 121
Eco24I GRGCYC 3 cut(s) 133, 187, 384
Eco53kI GAGCTC 3 cut(s) 131, 185, 382
Eco57I CTGAAG 1 cut(s) 245
EcoICRI GAGCTC 3 cut(s) 131, 185, 382
EcoO109I RGGNCCY 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 3 cut(s) 133, 187, 384
ErhI CCWWGG 1 cut(s) 18
FaiI YATR 4 cut(s) 275, 362, 438, 484
FauI CCCGC 2 cut(s) 303, 485
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 3 cut(s) 133, 187, 384
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 2 cut(s) 117, 371
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 2 cut(s) 201, 533
HaeIII GGCC 4 cut(s) 17, 77, 121, 418
HgaI GACGC 1 cut(s) 377
HinfI GANTC 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 68, 128, 173, 197
Hpy188III TCNNGA 2 cut(s) 218, 531
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 5 cut(s) 151, 271, 394, 437, 511
HpyCH4III ACNGT 2 cut(s) 319, 475
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 482, 502
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 102
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 68, 533
LpnPI CCDG 4 cut(s) 231, 377, 424, 497
LweI GCATC 2 cut(s) 188, 469
MaeI CTAG 2 cut(s) 117, 371
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 464
MboII GAAGA 2 cut(s) 125, 238
MfeI CAATTG 1 cut(s) 88
MhlI GDGCHC 4 cut(s) 133, 187, 384, 530
MlsI TGGCCA 2 cut(s) 77, 418
MluCI AATT 2 cut(s) 88, 250
MluNI TGGCCA 2 cut(s) 77, 418
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 6 cut(s) 124, 132, 172, 175, 327, 438
Mox20I TGGCCA 2 cut(s) 77, 418
Mph1103I ATGCAT 1 cut(s) 484
MscI TGGCCA 2 cut(s) 77, 418
MseI TTAA 3 cut(s) 35, 212, 249
Msp20I TGGCCA 2 cut(s) 77, 418
MunI CAATTG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 464
NsiI ATGCAT 1 cut(s) 484
NspV TTCGAA 1 cut(s) 354
PceI AGGCCT 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 3 cut(s) 133, 187, 384
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 15
RsaI GTAC 4 cut(s) 232, 324, 348, 510
RsaNI GTAC 4 cut(s) 231, 323, 347, 509
SacI GAGCTC 3 cut(s) 133, 187, 384
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 3 cut(s) 35, 212, 249
SatI GCNGC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 15
ScaI AGTACT 1 cut(s) 510
SchI GAGTC 1 cut(s) 17
SduI GDGCHC 4 cut(s) 133, 187, 384, 530
SfaNI GCATC 2 cut(s) 188, 469
SfuI TTCGAA 1 cut(s) 354
Sse9I AATT 2 cut(s) 88, 250
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 3 cut(s) 207, 296, 492
SspI AATATT 1 cut(s) 330
SspMI CTAG 2 cut(s) 117, 371
SstI GAGCTC 3 cut(s) 133, 187, 384
StuI AGGCCT 1 cut(s) 121
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 319, 475
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 237, 354
TasI AATT 2 cut(s) 88, 250
TatI WGTACW 1 cut(s) 508
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 35, 212, 249
Tru9I TTAA 3 cut(s) 35, 212, 249
TscAI CASTG 3 cut(s) 305, 322, 478
TseFI GTSAC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 3 cut(s) 305, 322, 478
XspI CTAG 2 cut(s) 117, 371
ZrmI AGTACT 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.