AT3G55510

Noc2p family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006353
Physical Location & Seq
Forward (+)
20578922 .. 20582505
3584 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55510.1

Sequence Viewer

Length: 1785 bp
ATGGGTAAGCTGGGGAAGAAAGCTAGGAAATTTGCCAAGAAAAATCTCCAGTCTGTTGAGAAACGAAGCAGAAAGCTCAAGCCTTTTATCAAGAAGAAATTTGCAAAGAGAAATGAGCGTCACCAAGCAGGAGATAAACAGGAGAAGAAGGTAGAGCAACAACCTAAGAAGAGATGTCAAGAAGAAGAATTTCAGGATATAGCAATAGATGCAGTATTCGGAAAGGATGATGATGAAGTTCTCCGCGATGGTGATTCAGATAGTGATGGATATCTGGATGAGTTGGTAAATGAAACTGACTCAGATATTATGAAGTGCAAAGTACTCTCAAGATCTTTTTTAGCCACTTGCTGTGACATGGTTGATAAGGAGCAGTATGTTCCAGCATTGGTTAGATTGTTAAATTGGTATCGAGCTGCATGTCAATATGGGCACGAACCATCAGGGATTGCTAGGCCTAATATATACTATGACATAGAAGACAGTGAGACATTTGCCAAGGTCATAATTTTTGTCCTCCAAAAAGCTGATCACACTTTTAGGAGTATCCTGGGATTATCAGATTCCAGTACTAAGGAGAAGATTTTGAAGTTGAAGAACAACCCAAAATGGGATAGTTTAAAACCACTGGTCAAATCTTTCTTTCGAAGTACCTTGCATCTTGTTAAGCAGGCAGGAGACTTGGAGATAATATCTTTTACCCTTACCCAACTTAGAGTCTCTATCGTGTTTTTGGCCGCATTTCCAGATCTTCTGAAAAAATTGATCAAGATATCTGTTCATCTGTGGGTAACCGGTGAAGAGACTATATCGCAGCAGGCTTTTCTAATCTTAAAAGACATCAGTATGGTTTTTAACTCGGAATGCTTTGATTCCTGCTTAATCAACATGTACAAAGCCTTTCTACATGACTGTGATATTCCAAAGGCAAATTCAGAACAACGTCCGTTCCTCAGAGATTCTCTTGTTGAGCTATGCTCTCAAGATGTGCAGAAGTCTTATACCAAGGCCTCTGTTTCTATTACACAACTTGCCAAGTTATTGAAGATGGCTCTCGCTACAAAGAATAAGGAAGCTGTTGAAAAGATACATAGTGGGGAGTACATAAATTGTGTTGATCTCTGGGTAAATTTTATTTCTGCCAACGTTCAGGATTGTGATCTCCAGCCTCTGCTTTATACTATAGTTCAGGTTATAAATGGAGTTGCTCAACTAATTATTGGACCACGTTACCTGCTCCTAAGGGTCAAATGTATCCACTGGCTCAACCATCTCTCTCGTACAAGCGGTATATTCATTCCCATTGCATCATTGGTATTGGATATGTTGGAATATAAAACCACAAATGATGGTGAAAAGCAAGAACAGAAGCTTGAAGCTGTCTCAACCGTAAAGCTGCCTAAGAATTGGTTGAAGTCCCAAAACTTCCAAGAACAGTGTATCTTTTCTGTGATTGAACTGCTTGCTGTCCACTTTGCTCAATGGAGCTTCCATATATCATTTCCAGATCTTGCAACGATTCCCGTCATGAGGCTGAAGAAATTTCACGAGAGAAGCACTATGGAAGGATTGAAGCGGGTGGTGAAACGCTTTATCGAGCAGGTAGAGTCGAACATTGAGTTTGTTCAGAGGAAGAGAGATGACGTGACTTTTTCTCCAAACGATCAACAATCTGCAGACACGTTTATGCAGCTTGAAAAGCAAAATGCGAATGCTCCTTATACACAATACTATCAAAGCATCATAGACAAAGCTCTTGGAACAAACAAGAAGAAGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Noc2

Protein Analysis

594

Amino Acids

68.37

Weight (kDa)

8.97

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Noc2 PF03715 289 - 580 9e-88 Noc2p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1196
Acc36I ACCTGC 2 cut(s) 1242, 1591
AccII CGCG 1 cut(s) 246
AciI CCGC 4 cut(s) 244, 738, 1287, 1576
AclI AACGTT 1 cut(s) 1146
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 6 cut(s) 29, 98, 188, 931, 1129, 1541
AcuI CTGAAG 1 cut(s) 1556
AfaI GTAC 6 cut(s) 324, 571, 652, 893, 1103, 1282
AfiI CCNNNNNNNGG 2 cut(s) 610, 1530
AflIII ACRYGT 2 cut(s) 888, 1680
AgeI ACCGGT 1 cut(s) 794
AgsI TTSAA 9 cut(s) 589, 595, 1045, 1082, 1376, 1414, 1457, 1573, 1697
AjiI CACGTC 1 cut(s) 1645
AjnI CCWGG 1 cut(s) 549
AjuI GAANNNNNNNTTGG 2 cut(s) 916, 948
Alw26I GTCTC 5 cut(s) 482, 672, 724, 797, 1387
AlwNI CAGNNNCTG 1 cut(s) 1171
AoxI GGCC 3 cut(s) 455, 735, 1008
ApeKI GCWGC 4 cut(s) 416, 814, 1396, 1690
ApoI RAATTY 6 cut(s) 29, 98, 188, 931, 1129, 1541
AsiGI ACCGGT 1 cut(s) 794
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 1223
AsuHPI GGTGA 5 cut(s) 113, 263, 809, 1364, 1594
AsuII TTCGAA 1 cut(s) 646
AvaII GGWCC 1 cut(s) 1223
AxyI CCTNAGG 1 cut(s) 1241
BaeGI GKGCMC 1 cut(s) 435
BauI CACGAG 1 cut(s) 1547
BbsI GAAGAC 1 cut(s) 486
BbvI GCAGC 4 cut(s) 403, 826, 1383, 1702
BccI CCATC 6 cut(s) 242, 260, 448, 1042, 1278, 1343
BciT130I CCWGG 1 cut(s) 551
BciVI GTATCC 2 cut(s) 557, 1265
BclI TGATCA 2 cut(s) 529, 765
BcoDI GTCTC 5 cut(s) 482, 672, 724, 797, 1387
BfaI CTAG 2 cut(s) 24, 453
BfmI CTRYAG 2 cut(s) 1182, 1674
BfuAI ACCTGC 2 cut(s) 1242, 1591
BfuI GTATCC 2 cut(s) 557, 1265
BglII AGATCT 3 cut(s) 332, 748, 1507
BisI GCNGC 5 cut(s) 417, 738, 815, 1397, 1691
BlsI GCNGC 5 cut(s) 418, 739, 816, 1398, 1692
BmcAI AGTACT 2 cut(s) 324, 571
Bme1390I CCNGG 1 cut(s) 551
Bme18I GGWCC 1 cut(s) 1223
BmgBI CACGTC 1 cut(s) 1645
BmgT120I GGNCC 1 cut(s) 1223
BmrFI CCNGG 1 cut(s) 551
BmsI GCATC 4 cut(s) 199, 667, 1316, 1749
BpiI GAAGAC 1 cut(s) 486
BplI GAGNNNNNCTC 2 cut(s) 962, 994
BpmI CTGGAG 2 cut(s) 32, 1148
Bpu14I TTCGAA 1 cut(s) 646
BpuEI CTTGAG 3 cut(s) 62, 313, 966
BsaBI GATNNNNATC 2 cut(s) 270, 1158
BsaJI CCNNGG 3 cut(s) 498, 550, 1005
BsaWI WCCGGW 1 cut(s) 794
BsaXI ACNNNNNCTCC 2 cut(s) 1639, 1669
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 1530
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 4 cut(s) 49, 567, 633, 1265
Bse21I CCTNAGG 1 cut(s) 1241
Bse3DI GCAATG 1 cut(s) 1302
Bse8I GATNNNNATC 2 cut(s) 270, 1158
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 3 cut(s) 498, 550, 1005
BseGI GGATG 2 cut(s) 232, 283
BseJI GATNNNNATC 2 cut(s) 270, 1158
BseLI CCNNNNNNNGG 2 cut(s) 610, 1530
BseMI GCAATG 1 cut(s) 1302
BseMII CTCAG 2 cut(s) 315, 967
BseNI ACTGG 4 cut(s) 49, 567, 633, 1265
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 4 cut(s) 403, 826, 1383, 1702
BseYI CCCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 1010
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 3 cut(s) 457, 737, 1010
BshTI ACCGGT 1 cut(s) 794
BsiSI CCGG 1 cut(s) 795
BslFI GGGAC 1 cut(s) 1402
BslI CCNNNNNNNGG 2 cut(s) 610, 1530
BsmAI GTCTC 5 cut(s) 482, 672, 724, 797, 1387
BsmFI GGGAC 1 cut(s) 1402
BsmI GAATGC 2 cut(s) 869, 1717
BsnI GGCC 3 cut(s) 457, 737, 1010
Bsp119I TTCGAA 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 435
Bsp1407I TGTACA 1 cut(s) 891
Bsp143I GATC 8 cut(s) 332, 529, 748, 765, 1117, 1159, 1507, 1663
BspACI CCGC 4 cut(s) 244, 738, 1287, 1576
BspANI GGCC 3 cut(s) 457, 737, 1010
BspCNI CTCAG 2 cut(s) 314, 966
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 1527
BspMAI CTGCAG 1 cut(s) 1678
BspMI ACCTGC 2 cut(s) 1242, 1591
BspT104I TTCGAA 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 1302
BsrFI RCCGGY 1 cut(s) 794
BsrGI TGTACA 1 cut(s) 891
BsrI ACTGG 4 cut(s) 49, 567, 633, 1265
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 3 cut(s) 498, 550, 1005
BssMI GATC 8 cut(s) 332, 529, 748, 765, 1117, 1159, 1507, 1663
BssSI CACGAG 1 cut(s) 1547
BssT1I CCWWGG 2 cut(s) 498, 1005
Bst2BI CACGAG 1 cut(s) 1547
Bst2UI CCWGG 1 cut(s) 551
Bst4CI ACNGT 4 cut(s) 485, 914, 1390, 1437
Bst6I CTCTTC 3 cut(s) 164, 795, 1628
BstAPI GCANNNNNTGC 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 891
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 3 cut(s) 672, 819, 1464
BstDEI CTNAG 7 cut(s) 165, 301, 573, 713, 953, 1241, 1401
BstEII GGTNACC 1 cut(s) 790
BstF5I GGATG 2 cut(s) 232, 283
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 8 cut(s) 335, 532, 751, 768, 1120, 1162, 1510, 1666
BstMAI GTCTC 5 cut(s) 482, 672, 724, 797, 1387
BstMBI GATC 8 cut(s) 332, 529, 748, 765, 1117, 1159, 1507, 1663
BstMWI GCNNNNNNNGC 2 cut(s) 209, 1699
BstNI CCWGG 1 cut(s) 551
BstNSI RCATGY 2 cut(s) 423, 892
BstPI GGTNACC 1 cut(s) 790
BstSCI CCNGG 1 cut(s) 549
BstSFI CTRYAG 2 cut(s) 1182, 1674
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 4 cut(s) 403, 826, 1383, 1702
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 3 cut(s) 332, 748, 1507
BstYI RGATCY 3 cut(s) 332, 748, 1507
Bsu36I CCTNAGG 1 cut(s) 1241
BsuI GTATCC 2 cut(s) 557, 1265
BsuRI GGCC 3 cut(s) 457, 737, 1010
BtgZI GCGATG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 1645
BtsCI GGATG 2 cut(s) 232, 283
BtsIMutI CAGTG 4 cut(s) 490, 626, 1258, 1442
BveI ACCTGC 2 cut(s) 1242, 1591
Cac8I GCNNGC 3 cut(s) 672, 819, 1464
CaiI CAGNNNCTG 1 cut(s) 1171
CciI TCATGA 1 cut(s) 1527
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 1 cut(s) 1223
CseI GACGC 1 cut(s) 107
Csp6I GTAC 6 cut(s) 323, 570, 651, 892, 1102, 1281
CspAI ACCGGT 1 cut(s) 794
CviAII CATG 5 cut(s) 358, 420, 889, 908, 1528
CviQI GTAC 6 cut(s) 323, 570, 651, 892, 1102, 1281
DdeI CTNAG 7 cut(s) 165, 301, 573, 713, 953, 1241, 1401
DpnI GATC 8 cut(s) 334, 531, 750, 767, 1119, 1161, 1509, 1665
DpnII GATC 8 cut(s) 332, 529, 748, 765, 1117, 1159, 1507, 1663
DraI TTTAAA 1 cut(s) 621
EaeI YGGCCR 1 cut(s) 735
Eam1104I CTCTTC 3 cut(s) 164, 795, 1628
EarI CTCTTC 3 cut(s) 164, 795, 1628
Eco130I CCWWGG 2 cut(s) 498, 1005
Eco147I AGGCCT 2 cut(s) 457, 1010
Eco32I GATATC 2 cut(s) 272, 774
Eco47I GGWCC 1 cut(s) 1223
Eco57I CTGAAG 1 cut(s) 1556
Eco81I CCTNAGG 1 cut(s) 1241
Eco91I GGTNACC 1 cut(s) 790
EcoO65I GGTNACC 1 cut(s) 790
EcoRII CCWGG 1 cut(s) 549
EcoRV GATATC 2 cut(s) 272, 774
EcoT14I CCWWGG 2 cut(s) 498, 1005
ErhI CCWWGG 2 cut(s) 498, 1005
FaeI CATG 5 cut(s) 361, 423, 892, 911, 1531
FaqI GGGAC 1 cut(s) 1402
FatI CATG 5 cut(s) 357, 419, 888, 907, 1527
FauI CCCGC 1 cut(s) 1569
FbaI TGATCA 2 cut(s) 529, 765
Fnu4HI GCNGC 5 cut(s) 417, 738, 815, 1397, 1691
FokI GGATG 2 cut(s) 239, 290
Fsp4HI GCNGC 5 cut(s) 417, 738, 815, 1397, 1691
FspBI CTAG 2 cut(s) 24, 453
GluI GCNGC 5 cut(s) 417, 738, 815, 1397, 1691
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 2 cut(s) 32, 1148
HaeIII GGCC 3 cut(s) 457, 737, 1010
HapII CCGG 1 cut(s) 795
HgaI GACGC 1 cut(s) 107
Hin1II CATG 5 cut(s) 361, 423, 892, 911, 1531
HindIII AAGCTT 1 cut(s) 1370
HinfI GANTC 8 cut(s) 254, 299, 563, 717, 872, 959, 1519, 1607
HpaII CCGG 1 cut(s) 795
HphI GGTGA 5 cut(s) 113, 263, 809, 1364, 1594
Hpy166II GTNNAC 1 cut(s) 1471
Hpy188I TCNGA 9 cut(s) 221, 259, 304, 562, 756, 862, 937, 956, 1629
Hpy8I GTNNAC 1 cut(s) 1471
HpyAV CCTTC 2 cut(s) 142, 1559
HpyCH4III ACNGT 4 cut(s) 485, 914, 1390, 1437
HpyCH4IV ACGT 5 cut(s) 943, 1146, 1228, 1644, 1682
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 1699
HpyF3I CTNAG 7 cut(s) 165, 301, 573, 713, 953, 1241, 1401
HpySE526I ACGT 5 cut(s) 943, 1146, 1228, 1644, 1682
Hsp92II CATG 5 cut(s) 361, 423, 892, 911, 1531
Ksp22I TGATCA 2 cut(s) 529, 765
Kzo9I GATC 8 cut(s) 332, 529, 748, 765, 1117, 1159, 1507, 1663
LmnI GCTCC 4 cut(s) 370, 1242, 1485, 1720
Lsp1109I GCAGC 4 cut(s) 403, 826, 1383, 1702
LweI GCATC 4 cut(s) 199, 667, 1316, 1749
MaeI CTAG 2 cut(s) 24, 453
MaeII ACGT 5 cut(s) 943, 1146, 1228, 1644, 1682
MaeIII GTNAC 5 cut(s) 119, 353, 790, 1229, 1645
MalI GATC 8 cut(s) 334, 531, 750, 767, 1119, 1161, 1509, 1665
MboI GATC 8 cut(s) 332, 529, 748, 765, 1117, 1159, 1507, 1663
MflI RGATCY 3 cut(s) 332, 748, 1507
MhlI GDGCHC 1 cut(s) 435
MlyI GAGTC 3 cut(s) 293, 726, 1616
MmeI TCCRAC 1 cut(s) 1308
MnlI CCTC 6 cut(s) 527, 962, 1021, 1179, 1524, 1623
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 6 cut(s) 401, 620, 666, 833, 855, 881
MslI CAYNNNNRTG 3 cut(s) 845, 912, 1685
MspI CCGG 1 cut(s) 795
MspR9I CCNGG 1 cut(s) 551
Mva1269I GAATGC 2 cut(s) 869, 1717
MvaI CCWGG 1 cut(s) 551
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 209, 1699
NdeII GATC 8 cut(s) 332, 529, 748, 765, 1117, 1159, 1507, 1663
NlaIII CATG 5 cut(s) 361, 423, 892, 911, 1531
NmuCI GTSAC 3 cut(s) 119, 353, 1645
NspI RCATGY 2 cut(s) 423, 892
NspV TTCGAA 1 cut(s) 646
PagI TCATGA 1 cut(s) 1527
PceI AGGCCT 2 cut(s) 457, 1010
PciI ACATGT 1 cut(s) 888
PctI GAATGC 2 cut(s) 869, 1717
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 5 cut(s) 254, 563, 872, 959, 1519
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 5 cut(s) 418, 739, 816, 1398, 1692
PleI GAGTC 3 cut(s) 293, 725, 1615
PpsI GAGTC 3 cut(s) 293, 725, 1615
PscI ACATGT 1 cut(s) 888
PsiI TTATAA 1 cut(s) 1196
Psp1406I AACGTT 1 cut(s) 1146
Psp6I CCWGG 1 cut(s) 549
PspEI GGTNACC 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 549
PspPI GGNCC 1 cut(s) 1223
PstI CTGCAG 1 cut(s) 1678
PstNI CAGNNNCTG 1 cut(s) 1171
PsuI RGATCY 3 cut(s) 332, 748, 1507
RsaI GTAC 6 cut(s) 324, 571, 652, 893, 1103, 1282
RsaNI GTAC 6 cut(s) 323, 570, 651, 892, 1102, 1281
RseI CAYNNNNRTG 3 cut(s) 845, 912, 1685
SaqAI TTAA 6 cut(s) 401, 620, 666, 833, 855, 881
SatI GCNGC 5 cut(s) 417, 738, 815, 1397, 1691
Sau3AI GATC 8 cut(s) 332, 529, 748, 765, 1117, 1159, 1507, 1663
Sau96I GGNCC 1 cut(s) 1223
ScaI AGTACT 2 cut(s) 324, 571
SchI GAGTC 3 cut(s) 293, 726, 1616
ScrFI CCNGG 1 cut(s) 551
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 4 cut(s) 199, 667, 1316, 1749
SfcI CTRYAG 2 cut(s) 1182, 1674
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 1 cut(s) 1223
SmiMI CAYNNNNRTG 3 cut(s) 845, 912, 1685
SmlI CTYRAG 3 cut(s) 77, 328, 981
SmoI CTYRAG 3 cut(s) 77, 328, 981
SseBI AGGCCT 2 cut(s) 457, 1010
SsiI CCGC 4 cut(s) 244, 738, 1287, 1576
SspMI CTAG 2 cut(s) 24, 453
StuI AGGCCT 2 cut(s) 457, 1010
StyD4I CCNGG 1 cut(s) 549
StyI CCWWGG 2 cut(s) 498, 1005
TaaI ACNGT 4 cut(s) 485, 914, 1390, 1437
TaiI ACGT 5 cut(s) 946, 1149, 1231, 1647, 1685
TaqI TCGA 4 cut(s) 412, 646, 1596, 1610
TatI WGTACW 4 cut(s) 322, 569, 891, 1101
TauI GCSGC 1 cut(s) 740
TfiI GAWTC 5 cut(s) 254, 563, 872, 959, 1519
Tru1I TTAA 6 cut(s) 401, 620, 666, 833, 855, 881
Tru9I TTAA 6 cut(s) 401, 620, 666, 833, 855, 881
TscAI CASTG 4 cut(s) 490, 633, 1265, 1442
TseFI GTSAC 3 cut(s) 119, 353, 1645
TseI GCWGC 4 cut(s) 416, 814, 1396, 1690
Tsp45I GTSAC 3 cut(s) 119, 353, 1645
TspDTI ATGAA 5 cut(s) 249, 306, 326, 770, 1285
TspGWI ACGGA 1 cut(s) 936
TspRI CASTG 4 cut(s) 490, 633, 1265, 1442
VpaK11BI GGWCC 1 cut(s) 1223
XapI RAATTY 6 cut(s) 29, 98, 188, 931, 1129, 1541
XceI RCATGY 2 cut(s) 423, 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 1309
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 24, 453
ZrmI AGTACT 2 cut(s) 324, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.