Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006353

Physical Location & Seq

Genomic Coordinates Reverse (-)

14239817 .. 14242702

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGCAAGCTGGGGAAGAAGGCAAGGAAGTTCTCGAAGAAGAATCTCCAGTCCGTTCTCAGAAAAAATCGCAAGTTGAATTCCAAGTTCAACAAAAGGAGAACTTCCAAGAAAGGTGGGAAAGAAGATGGCGGTAAAGAACAGAAAAAGGACGCAGTAGAGTTGTCTAATGCAAGAAATACTGAAGGAGAATACATAGAAGACACTCCTCTTGATGCGATATTCAGTGAAGATGAGAATGATGTGTTTGGAGATGATTCAGACAGTGATGGGAATCTTTCAGAGAACAGGGAAATTCAACTTGAACTTGCGAAGAAAACGAAAAAATTAGACAAACTGAAGGAAAAGGACCCAGATTTTTCTAACTTTCTTGATGGCTGTCATAAGCGATCTGAACAGTTCAGAAACAAAAAGTATGCCGATGAGGATGAGATGAGCGAGGATGATATGCAGCCAGAGAATGTGGATGGTGTTAACACTCACGGTAGCAAGTTGTTGACCAGCTCTGCCATTGATTCTTTGTGTCAACTAGTCAAAGAGCACCAAAGTGTGCCTGCGCTTACTAGTCTATTAAATGGGTACCGTGCTGCATGCCACTATGGAGCTGAATCAACCAGGGTCTTTGATGCTGATTCTTGTTGTGGAATTCAGAACAGTGAAACCTTTTGCAAGATATTAATGTTCATGCTTAATGAGGCTGATAATATATTTAGGGGGCTAATGGGCATATCAAGCTCCAATCCCAAGAAAGAGAAGAGTTTGGACTTAAGCAAGAATTCAAAATGGAATACTCTTAAGCCATTGATAAAATCATATTTGAGGAGTACCCTTTTACTGCTGAATGAGGTTAATGAATCTGAGATATTGGCCTTCTCCTTAGCACGGATCAGAGCTTCGTTGACATTTTTTGTTGCTTTCCCTTCTTTGCTCCGCAGACTTATCAAGATTGCTGTTCATCTGTGGGCAACAGGGAAAGGAACTATATCATCTCTATCCTTTTTCATCATACGCGATGTGGCTTCTGTTTTTCGCTCTGATTGCTTTGACACCTGCTTTATTAACACATATAAATCATTTATTGGTCATTGCCAATTTATGGAGCCTGTTCTATTTCAACACGTACAGTTTCTAAGAAACTCCTTTGTTGAGCTATGCTCTGTGGATCGATCTGCAGAAAGCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

395

Amino Acids

44.58

Weight (kDa)

8.39

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55510 AT3G55510
fragaria_vesca	FvH4_2g10660 FvH4_2g10660 FvH4_2g10660 FvH4_2g10660 FvH4_2g10660
malus_domestica	MD01G1111800.v1.1 MD07G1178300.v1.1
prunus_persica	Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1
pyrus_communis	pycom01g13910 pycom07g17200
rosa_chinensis	RchiOBHm_Chr5g0044521
rosa_laevigata	RLG00000034279
rosa_multiflora	Rmu_co8510899.1_g000001 Rmu_ssc0000151.1_g000024
rosa_roxburghii	Rroxscaffold_1G00036490
rosa_rugosa	Rorug05G0215000
rosa_samantha	Rh5AG299100 Rh5BG306600 Rh5CG333300 Rh5DG315900
rosa_wichuraiana	Rw5G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1058
Acc36I	ACCTGC	1 cut(s)	1058
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	579
AccB7I	CCANNNNNTGG	1 cut(s)	1096
AccII	CGCG	1 cut(s)	1011
AciI	CCGC	2 cut(s)	132, 931
AclWI	GGATC	2 cut(s)	893, 1170
AcsI	RAATTY	4 cut(s)	79, 294, 645, 775
AcuI	CTGAAG	2 cut(s)	204, 359
AfaI	GTAC	3 cut(s)	581, 826, 1122
AfiI	CCNNNNNNNGG	2 cut(s)	882, 1096
AflII	CTTAAG	2 cut(s)	766, 794
AflIII	ACRYGT	1 cut(s)	1117
AgsI	TTSAA	6 cut(s)	79, 91, 299, 305, 780, 1115
AhlI	ACTAGT	2 cut(s)	529, 563
AjnI	CCWGG	1 cut(s)	614
AleI	CACNNNNGTG	1 cut(s)	546
AluBI	AGCT	6 cut(s)	10, 504, 605, 735, 893, 1150
AluI	AGCT	6 cut(s)	10, 504, 605, 735, 893, 1150
Alw21I	GWGCWC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	893, 1170
AoxI	GGCC	1 cut(s)	867
ApeKI	GCWGC	2 cut(s)	451, 587
ApoI	RAATTY	4 cut(s)	79, 294, 645, 775
AseI	ATTAAT	1 cut(s)	677
Asp718I	GGTACC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	2 cut(s)	463, 574
BccI	CCATC	4 cut(s)	122, 263, 368, 461
BciT130I	CCWGG	1 cut(s)	616
BcuI	ACTAGT	2 cut(s)	529, 563
BfaI	CTAG	3 cut(s)	530, 564, 1183
BfmI	CTRYAG	1 cut(s)	1170
BfrI	CTTAAG	2 cut(s)	766, 794
BfuAI	ACCTGC	1 cut(s)	1058
BisI	GCNGC	2 cut(s)	452, 588
BlsI	GCNGC	2 cut(s)	453, 589
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	3 cut(s)	351, 581, 1101
BmrFI	CCNGG	1 cut(s)	616
BmsI	GCATC	2 cut(s)	205, 616
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	1139, 1171
BpmI	CTGGAG	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	877
Bsa29I	ATCGAT	1 cut(s)	1165
BsaAI	YACGTR	1 cut(s)	1120
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	2 cut(s)	882, 1096
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	1084
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	616
BseCI	ATCGAT	1 cut(s)	1165
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	3 cut(s)	433, 448, 472
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	882, 1096
BseMI	GCAATG	1 cut(s)	1084
BseMII	CTCAG	2 cut(s)	73, 849
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	2 cut(s)	198, 835
BseXI	GCAGC	2 cut(s)	463, 574
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	1011
BshFI	GGCC	1 cut(s)	869
BshNI	GGYRCC	1 cut(s)	579
BshVI	ATCGAT	1 cut(s)	1165
BsiHKAI	GWGCWC	1 cut(s)	543
BslI	CCNNNNNNNGG	2 cut(s)	882, 1096
BsnI	GGCC	1 cut(s)	869
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	389, 885, 1162, 1166
BspACI	CCGC	2 cut(s)	132, 931
BspANI	GGCC	1 cut(s)	869
BspCNI	CTCAG	2 cut(s)	72, 850
BspDI	ATCGAT	1 cut(s)	1165
BspFNI	CGCG	1 cut(s)	1011
BspLI	GGNNCC	3 cut(s)	351, 581, 1101
BspMAI	CTGCAG	1 cut(s)	1174
BspMI	ACCTGC	1 cut(s)	1058
BspPI	GGATC	2 cut(s)	893, 1170
BspT107I	GGYRCC	1 cut(s)	579
BspTI	CTTAAG	2 cut(s)	766, 794
BsrDI	GCAATG	1 cut(s)	1084
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	615
BssMI	GATC	4 cut(s)	389, 885, 1162, 1166
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	6 cut(s)	266, 399, 485, 584, 656, 1125
Bst6I	CTCTTC	1 cut(s)	749
BstAFI	CTTAAG	2 cut(s)	766, 794
BstBAI	YACGTR	1 cut(s)	1120
BstC8I	GCNNGC	3 cut(s)	8, 555, 592
BstDEI	CTNAG	4 cut(s)	59, 858, 877, 1130
BstF5I	GGATG	3 cut(s)	433, 448, 472
BstFNI	CGCG	1 cut(s)	1011
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	4 cut(s)	392, 888, 1165, 1169
BstMBI	GATC	4 cut(s)	389, 885, 1162, 1166
BstMWI	GCNNNNNNNGC	2 cut(s)	732, 1038
BstNI	CCWGG	1 cut(s)	616
BstNSI	RCATGY	1 cut(s)	594
BstSCI	CCNGG	1 cut(s)	614
BstSFI	CTRYAG	1 cut(s)	1170
BstUI	CGCG	1 cut(s)	1011
BstV1I	GCAGC	2 cut(s)	463, 574
BstV2I	GAAGAC	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	1165
BsuRI	GGCC	1 cut(s)	869
BsuTUI	ATCGAT	1 cut(s)	1165
BtgZI	GCGATG	1 cut(s)	1026
BtsCI	GGATG	3 cut(s)	433, 448, 472
BtsIMutI	CAGTG	3 cut(s)	232, 271, 661
BveI	ACCTGC	1 cut(s)	1058
Cac8I	GCNNGC	3 cut(s)	8, 555, 592
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	1165
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	580, 825, 1121
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	2 cut(s)	591, 685
CviQI	GTAC	3 cut(s)	580, 825, 1121
DdeI	CTNAG	4 cut(s)	59, 858, 877, 1130
DpnI	GATC	4 cut(s)	391, 887, 1164, 1168
DpnII	GATC	4 cut(s)	389, 885, 1162, 1166
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	204, 359
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRI	GAATTC	3 cut(s)	79, 645, 775
EcoRII	CCWGG	1 cut(s)	614
FaeI	CATG	2 cut(s)	594, 688
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	2 cut(s)	590, 684
Fnu4HI	GCNGC	2 cut(s)	452, 588
FokI	GGATG	3 cut(s)	440, 455, 479
Fsp4HI	GCNGC	2 cut(s)	452, 588
FspBI	CTAG	3 cut(s)	530, 564, 1183
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	2 cut(s)	452, 588
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	869
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	2 cut(s)	594, 688
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	4 cut(s)	475, 498, 527, 900
HindII	GTYRAC	4 cut(s)	475, 498, 527, 900
HinfI	GANTC	7 cut(s)	43, 257, 274, 515, 608, 632, 854
HpaI	GTTAAC	1 cut(s)	475
Hpy166II	GTNNAC	4 cut(s)	475, 498, 527, 900
Hpy188I	TCNGA	9 cut(s)	62, 262, 283, 394, 404, 651, 859, 890, 1036
Hpy188III	TCNNGA	4 cut(s)	34, 212, 371, 943
Hpy8I	GTNNAC	4 cut(s)	475, 498, 527, 900
HpyAV	CCTTC	5 cut(s)	13, 179, 334, 880, 930
HpyCH4III	ACNGT	6 cut(s)	266, 399, 485, 584, 656, 1125
HpyCH4IV	ACGT	1 cut(s)	1119
HpyCH4V	TGCA	5 cut(s)	173, 451, 590, 669, 1172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	732, 1038
HpyF3I	CTNAG	4 cut(s)	59, 858, 877, 1130
HpySE526I	ACGT	1 cut(s)	1119
Hsp92II	CATG	2 cut(s)	594, 688
HspAI	GCGC	1 cut(s)	557
KpnI	GGTACC	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	389, 885, 1162, 1166
LmnI	GCTCC	4 cut(s)	602, 740, 933, 1099
Lsp1109I	GCAGC	2 cut(s)	463, 574
LweI	GCATC	2 cut(s)	205, 616
MaeI	CTAG	3 cut(s)	530, 564, 1183
MaeII	ACGT	1 cut(s)	1119
MalI	GATC	4 cut(s)	391, 887, 1164, 1168
MboI	GATC	4 cut(s)	389, 885, 1162, 1166
MboII	GAAGA	8 cut(s)	28, 49, 52, 137, 212, 242, 325, 766
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	6 cut(s)	79, 294, 326, 645, 775, 1091
MnlI	CCTC	6 cut(s)	219, 418, 433, 688, 813, 838
MseI	TTAA	8 cut(s)	474, 572, 677, 690, 767, 795, 849, 1059
MslI	CAYNNNNRTG	1 cut(s)	546
MspCI	CTTAAG	2 cut(s)	766, 794
MspR9I	CCNGG	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	616
MvnI	CGCG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	2 cut(s)	732, 1038
NdeII	GATC	4 cut(s)	389, 885, 1162, 1166
NlaIII	CATG	2 cut(s)	594, 688
NlaIV	GGNNCC	3 cut(s)	351, 581, 1101
NspI	RCATGY	1 cut(s)	594
OliI	CACNNNNGTG	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	594
PaqCI	CACCTGC	1 cut(s)	1058
PfeI	GAWTC	7 cut(s)	43, 257, 274, 515, 608, 632, 854
PflMI	CCANNNNNTGG	1 cut(s)	1096
PkrI	GCNGC	2 cut(s)	453, 589
Ppu21I	YACGTR	1 cut(s)	1120
PpuMI	RGGWCCY	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	614
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	3 cut(s)	351, 581, 1101
PspPI	GGNCC	1 cut(s)	349
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	1174
RsaI	GTAC	3 cut(s)	581, 826, 1122
RsaNI	GTAC	3 cut(s)	580, 825, 1121
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	8 cut(s)	474, 572, 677, 690, 767, 795, 849, 1059
SatI	GCNGC	2 cut(s)	452, 588
Sau3AI	GATC	4 cut(s)	389, 885, 1162, 1166
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	616
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	2 cut(s)	205, 616
SfcI	CTRYAG	1 cut(s)	1170
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	766, 794
SmoI	CTYRAG	2 cut(s)	766, 794
SpeI	ACTAGT	2 cut(s)	529, 563
SphI	GCATGC	1 cut(s)	594
Sse9I	AATT	6 cut(s)	79, 294, 326, 645, 775, 1091
SsiI	CCGC	2 cut(s)	132, 931
SspMI	CTAG	3 cut(s)	530, 564, 1183
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	6 cut(s)	266, 399, 485, 584, 656, 1125
TaiI	ACGT	1 cut(s)	1122
TaqI	TCGA	2 cut(s)	35, 1165
TasI	AATT	6 cut(s)	79, 294, 326, 645, 775, 1091
TfiI	GAWTC	7 cut(s)	43, 257, 274, 515, 608, 632, 854
Tru1I	TTAA	8 cut(s)	474, 572, 677, 690, 767, 795, 849, 1059
Tru9I	TTAA	8 cut(s)	474, 572, 677, 690, 767, 795, 849, 1059
TscAI	CASTG	3 cut(s)	232, 271, 661
TseI	GCWGC	2 cut(s)	451, 587
TspDTI	ATGAA	4 cut(s)	673, 867, 944, 991
TspGWI	ACGGA	2 cut(s)	43, 898
TspRI	CASTG	3 cut(s)	232, 271, 661
Van91I	CCANNNNNTGG	1 cut(s)	1096
Vha464I	CTTAAG	2 cut(s)	766, 794
VpaK11BI	GGWCC	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	677
XapI	RAATTY	4 cut(s)	79, 294, 645, 775
XceI	RCATGY	1 cut(s)	594
XspI	CTAG	3 cut(s)	530, 564, 1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.