Rorug05G0215000

Nucleolar complex protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006353
Physical Location & Seq
Reverse (-)
22175790 .. 22176842
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0215000.1

Sequence Viewer

Length: 1053 bp
ATGGAGCAGACCCAGATCGTTGAAAATGAAGCTTCCGGTTCCAATGTGGATATAACGGAGGTCGAGAAGCATCAAGATTCCGTTTCCGGTGCCGCCAAAGCTAATCCCAAGGCTGACAAGAACGATAAAGAATCCGGGTCGGGTCCTTCCGGATCCGGTTCCTCTGCTCCAGAACCGTTTAGGGTTTTCACCCAGGACGGAATGATGTTGAGAGTAAGGGGAACCAGTGCGGATCTAATAATATTCAAGAGGAACTTCATTTCCTGTATGGCCTTGGCCGCCGGAGAAACCACAGTGGTGGCCGTGCACAAGTATCCGGCTTCTAATCTGACCCATCGGGCCCGGTTCCAGGCTTTTCGGGCTTTCTTGGCGGAGACGGTTCATAAATATGGTGGAATTGTCCAAAATGCCCATATCAAGACTGCGCTGTACGGCGGCTCTAGGGATGAGATTGCTCAGATTTTGGTTCATGGGTTTAGTGCTGCCAATGCTAATGGTGGCGCCCATGGTTGTGTTCAATTGGTTCCTGCTGCGCATTCTTTGGATGCTGCATTGTCCTGTGAAGTTGATGAAGCTGAGCTAAGGCACGTACTGGTGTGCCGGGTCATACTGGGGAGGGTGCAGTTAGTCCCTGATGGCTCGAACCATGTTGGTCCCGATTTCGATACCGGTTGTGACAGTTTTACCGATGCTAGGACACTTTATGTGCCTGCCGGTTTAGCCAACTCTCGCATTTGTGCTGATTTTGTTATAAGCTTCAAGGCTCCTTCTTGCTTATGGGATTATGCAACGTATGCTACTCAGGCGAGTGGTGGTTTTGTTGGTGCTTCAAGGGGACCTAGACCACAAGAACTACCCATTAATTTGTTTGCTGTGTTGGACCGGCTCGCAAGTTTTGTCACTCCTCTACAAATGACCATTGCTGTCGAGTTGTTTTGGAAGTATAAGGGAAACAACATGAGCCGACATGAGCTGATTCGACAACTGAGACTCATGGTTGGTGAGGAGGCGTTGGTTGCAGCGGCCAAGGCATCAGCTTCGGTGAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Noc2

Protein Analysis

350

Amino Acids

37.45

Weight (kDa)

6.41

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 282 - 343 9.5e-08 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 752
Acc16I TGCGCA 1 cut(s) 534
AccB1I GGYRCC 2 cut(s) 89, 500
AccIII TCCGGA 1 cut(s) 149
AciI CCGC 6 cut(s) 93, 230, 279, 371, 435, 1022
AclWI GGATC 3 cut(s) 147, 160, 240
AcoI YGGCCR 3 cut(s) 276, 300, 1023
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 2 cut(s) 431, 591
AfiI CCNNNNNNNGG 2 cut(s) 349, 693
AgeI ACCGGT 1 cut(s) 668
AgsI TTSAA 5 cut(s) 23, 247, 518, 760, 831
AjnI CCWGG 2 cut(s) 192, 348
AleI CACNNNNGTG 1 cut(s) 296
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 7 cut(s) 32, 101, 575, 580, 756, 973, 1037
AluI AGCT 7 cut(s) 32, 101, 575, 580, 756, 973, 1037
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 368, 982
Alw44I GTGCAC 1 cut(s) 305
AlwI GGATC 3 cut(s) 147, 160, 240
Aor13HI TCCGGA 1 cut(s) 149
AoxI GGCC 5 cut(s) 270, 276, 300, 339, 1023
ApaI GGGCCC 1 cut(s) 343
ApaLI GTGCAC 1 cut(s) 305
ApeKI GCWGC 4 cut(s) 482, 530, 548, 1019
AseI ATTAAT 1 cut(s) 861
AsiGI ACCGGT 1 cut(s) 668
AspLEI GCGC 3 cut(s) 427, 503, 535
AspS9I GGNCC 6 cut(s) 143, 339, 340, 653, 836, 880
AsuC2I CCSGG 3 cut(s) 136, 343, 602
AsuHPI GGTGA 2 cut(s) 181, 1013
AvaII GGWCC 4 cut(s) 143, 653, 836, 880
BaeGI GKGCMC 2 cut(s) 309, 343
BamHI GGATCC 1 cut(s) 152
BanI GGYRCC 2 cut(s) 89, 500
BanII GRGCYC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 4 cut(s) 469, 517, 535, 1031
BccI CCATC 2 cut(s) 342, 629
BceAI ACGGC 2 cut(s) 287, 448
BcgI CGANNNNNNTGC 1 cut(s) 1020
BciT130I CCWGG 2 cut(s) 194, 350
BciVI GTATCC 1 cut(s) 324
BcnI CCSGG 3 cut(s) 136, 343, 602
BcoDI GTCTC 2 cut(s) 368, 982
BfaI CTAG 3 cut(s) 441, 693, 840
BfoI RGCGCY 1 cut(s) 504
BfuI GTATCC 1 cut(s) 324
BisI GCNGC 8 cut(s) 93, 279, 436, 483, 531, 549, 1020, 1023
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 8 cut(s) 94, 280, 437, 484, 532, 550, 1021, 1024
Bme1390I CCNGG 5 cut(s) 136, 194, 343, 350, 602
Bme18I GGWCC 4 cut(s) 143, 653, 836, 880
BmgT120I GGNCC 6 cut(s) 143, 339, 340, 653, 836, 880
BmrFI CCNGG 5 cut(s) 136, 194, 343, 350, 602
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 4 cut(s) 79, 535, 679, 1040
BmuI ACTGGG 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 581
Bpu1102I GCTNAGC 1 cut(s) 576
BpuMI CCSGG 3 cut(s) 136, 343, 602
BsaAI YACGTR 1 cut(s) 589
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 5 cut(s) 108, 192, 273, 505, 1026
BsaWI WCCGGW 5 cut(s) 35, 86, 149, 155, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 693
Bse118I RCCGGY 3 cut(s) 668, 713, 882
Bse1I ACTGG 3 cut(s) 225, 597, 615
Bse3DI GCAATG 1 cut(s) 918
BseAI TCCGGA 1 cut(s) 149
BseBI CCWGG 2 cut(s) 194, 350
BseDI CCNNGG 5 cut(s) 108, 192, 273, 505, 1026
BseGI GGATG 2 cut(s) 451, 550
BseLI CCNNNNNNNGG 2 cut(s) 349, 693
BseMI GCAATG 1 cut(s) 918
BseMII CTCAG 4 cut(s) 470, 567, 815, 977
BseNI ACTGG 3 cut(s) 225, 597, 615
BseRI GAGGAG 2 cut(s) 894, 1019
BseSI GKGCMC 2 cut(s) 309, 343
BseXI GCAGC 4 cut(s) 469, 517, 535, 1031
BsgI GTGCAG 1 cut(s) 641
BshFI GGCC 5 cut(s) 272, 278, 302, 341, 1025
BshNI GGYRCC 2 cut(s) 89, 500
BshTI ACCGGT 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 309
BslFI GGGAC 3 cut(s) 614, 639, 849
BslI CCNNNNNNNGG 2 cut(s) 349, 693
BsmAI GTCTC 2 cut(s) 368, 982
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 3 cut(s) 614, 639, 849
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 5 cut(s) 272, 278, 302, 341, 1025
Bsp120I GGGCCC 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 309, 343
Bsp13I TCCGGA 1 cut(s) 149
Bsp143I GATC 3 cut(s) 15, 152, 232
Bsp1720I GCTNAGC 1 cut(s) 576
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 6 cut(s) 93, 230, 279, 371, 435, 1022
BspANI GGCC 5 cut(s) 272, 278, 302, 341, 1025
BspCNI CTCAG 4 cut(s) 469, 568, 814, 978
BspEI TCCGGA 1 cut(s) 149
BspPI GGATC 3 cut(s) 147, 160, 240
BspT107I GGYRCC 2 cut(s) 89, 500
BsrDI GCAATG 1 cut(s) 918
BsrFI RCCGGY 3 cut(s) 668, 713, 882
BsrI ACTGG 3 cut(s) 225, 597, 615
BssAI RCCGGY 3 cut(s) 668, 713, 882
BssECI CCNNGG 5 cut(s) 108, 192, 273, 505, 1026
BssMI GATC 3 cut(s) 15, 152, 232
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 4 cut(s) 108, 273, 505, 1026
Bst2UI CCWGG 2 cut(s) 194, 350
Bst4CI ACNGT 4 cut(s) 177, 295, 379, 680
BstACI GRCGYC 1 cut(s) 501
BstAPI GCANNNNNTGC 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 589
BstC8I GCNNGC 2 cut(s) 711, 888
BstDEI CTNAG 5 cut(s) 456, 576, 581, 801, 986
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 2 cut(s) 451, 550
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 3 cut(s) 427, 503, 535
BstKTI GATC 3 cut(s) 18, 155, 235
BstMAI GTCTC 2 cut(s) 368, 982
BstMBI GATC 3 cut(s) 15, 152, 232
BstNI CCWGG 2 cut(s) 194, 350
BstSCI CCNGG 5 cut(s) 134, 192, 341, 348, 600
BstSLI GKGCMC 2 cut(s) 309, 343
BstV1I GCAGC 4 cut(s) 469, 517, 535, 1031
BstX2I RGATCY 2 cut(s) 152, 232
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 2 cut(s) 152, 232
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 5 cut(s) 272, 278, 302, 341, 1025
BtgI CCRYGG 1 cut(s) 505
BtsCI GGATG 2 cut(s) 451, 550
BtsIMutI CAGTG 2 cut(s) 232, 300
Cac8I GCNNGC 2 cut(s) 711, 888
CfoI GCGC 3 cut(s) 427, 503, 535
Cfr10I RCCGGY 3 cut(s) 668, 713, 882
Cfr13I GGNCC 6 cut(s) 143, 339, 340, 653, 836, 880
Csp6I GTAC 2 cut(s) 430, 590
CspAI ACCGGT 1 cut(s) 668
CviAII CATG 6 cut(s) 470, 506, 647, 958, 968, 994
CviQI GTAC 2 cut(s) 430, 590
DdeI CTNAG 5 cut(s) 456, 576, 581, 801, 986
DinI GGCGCC 1 cut(s) 502
DpnI GATC 3 cut(s) 17, 154, 234
DpnII GATC 3 cut(s) 15, 152, 232
EaeI YGGCCR 3 cut(s) 276, 300, 1023
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 4 cut(s) 108, 273, 505, 1026
Eco24I GRGCYC 1 cut(s) 343
Eco47I GGWCC 4 cut(s) 143, 653, 836, 880
EcoO109I RGGNCCY 2 cut(s) 143, 836
EcoRII CCWGG 2 cut(s) 192, 348
EcoT14I CCWWGG 4 cut(s) 108, 273, 505, 1026
EcoT38I GRGCYC 1 cut(s) 343
EgeI GGCGCC 1 cut(s) 502
EheI GGCGCC 1 cut(s) 502
ErhI CCWWGG 4 cut(s) 108, 273, 505, 1026
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 6 cut(s) 473, 509, 650, 961, 971, 997
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 3 cut(s) 614, 639, 849
FatI CATG 6 cut(s) 469, 505, 646, 957, 967, 993
Fnu4HI GCNGC 8 cut(s) 93, 279, 436, 483, 531, 549, 1020, 1023
FokI GGATG 2 cut(s) 458, 557
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 8 cut(s) 93, 279, 436, 483, 531, 549, 1020, 1023
FspBI CTAG 3 cut(s) 441, 693, 840
FspI TGCGCA 1 cut(s) 534
GlaI GCGC 3 cut(s) 426, 502, 534
GluI GCNGC 8 cut(s) 93, 279, 436, 483, 531, 549, 1020, 1023
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 5 cut(s) 272, 278, 302, 341, 1025
HhaI GCGC 3 cut(s) 427, 503, 535
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 6 cut(s) 473, 509, 650, 961, 971, 997
Hin6I GCGC 3 cut(s) 425, 501, 533
HinP1I GCGC 3 cut(s) 425, 501, 533
HindIII AAGCTT 2 cut(s) 30, 754
HinfI GANTC 4 cut(s) 77, 131, 976, 990
HphI GGTGA 2 cut(s) 181, 1013
Hpy166II GTNNAC 2 cut(s) 307, 1045
Hpy188I TCNGA 2 cut(s) 330, 459
Hpy188III TCNNGA 7 cut(s) 64, 74, 150, 170, 247, 418, 656
Hpy8I GTNNAC 2 cut(s) 307, 1045
HpyAV CCTTC 2 cut(s) 156, 777
HpyCH4III ACNGT 4 cut(s) 177, 295, 379, 680
HpyCH4IV ACGT 2 cut(s) 588, 791
HpyCH4V TGCA 5 cut(s) 307, 551, 622, 788, 1019
HpyF3I CTNAG 5 cut(s) 456, 576, 581, 801, 986
HpySE526I ACGT 2 cut(s) 588, 791
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 6 cut(s) 473, 509, 650, 961, 971, 997
HspAI GCGC 3 cut(s) 425, 501, 533
KasI GGCGCC 1 cut(s) 500
Kpn2I TCCGGA 1 cut(s) 149
Kzo9I GATC 3 cut(s) 15, 152, 232
LmnI GCTCC 3 cut(s) 4, 172, 769
Lsp1109I GCAGC 4 cut(s) 469, 517, 535, 1031
LweI GCATC 4 cut(s) 79, 535, 679, 1040
MaeI CTAG 3 cut(s) 441, 693, 840
MaeII ACGT 2 cut(s) 588, 791
MaeIII GTNAC 2 cut(s) 674, 898
MalI GATC 3 cut(s) 17, 154, 234
MboI GATC 3 cut(s) 15, 152, 232
MfeI CAATTG 1 cut(s) 518
MflI RGATCY 2 cut(s) 152, 232
MhlI GDGCHC 2 cut(s) 309, 343
MluCI AATT 3 cut(s) 396, 518, 862
Mly113I GGCGCC 1 cut(s) 501
MlyI GAGTC 1 cut(s) 984
MmeI TCCRAC 1 cut(s) 858
MnlI CCTC 7 cut(s) 52, 172, 243, 609, 915, 997, 1000
MroI TCCGGA 1 cut(s) 149
MseI TTAA 1 cut(s) 861
MslI CAYNNNNRTG 3 cut(s) 296, 387, 510
MspA1I CMGCKG 1 cut(s) 1022
MspR9I CCNGG 5 cut(s) 136, 194, 343, 350, 602
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 2 cut(s) 194, 350
NarI GGCGCC 1 cut(s) 501
NciI CCSGG 3 cut(s) 136, 343, 602
NcoI CCATGG 1 cut(s) 505
NdeII GATC 3 cut(s) 15, 152, 232
NlaIII CATG 6 cut(s) 473, 509, 650, 961, 971, 997
NmuCI GTSAC 2 cut(s) 674, 898
NsbI TGCGCA 1 cut(s) 534
OliI CACNNNNGTG 1 cut(s) 296
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 3 cut(s) 77, 131, 976
PinAI ACCGGT 1 cut(s) 668
PkrI GCNGC 8 cut(s) 94, 280, 437, 484, 532, 550, 1021, 1024
PleI GAGTC 1 cut(s) 984
PluTI GGCGCC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 984
Ppu21I YACGTR 1 cut(s) 589
PpuMI RGGWCCY 2 cut(s) 143, 836
PshBI ATTAAT 1 cut(s) 861
PsiI TTATAA 1 cut(s) 752
Psp5II RGGWCCY 2 cut(s) 143, 836
Psp6I CCWGG 2 cut(s) 192, 348
PspGI CCWGG 2 cut(s) 192, 348
PspOMI GGGCCC 1 cut(s) 339
PspPI GGNCC 6 cut(s) 143, 339, 340, 653, 836, 880
PspPPI RGGWCCY 2 cut(s) 143, 836
PsuI RGATCY 2 cut(s) 152, 232
RsaI GTAC 2 cut(s) 431, 591
RsaNI GTAC 2 cut(s) 430, 590
RseI CAYNNNNRTG 3 cut(s) 296, 387, 510
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 8 cut(s) 93, 279, 436, 483, 531, 549, 1020, 1023
Sau3AI GATC 3 cut(s) 15, 152, 232
Sau96I GGNCC 6 cut(s) 143, 339, 340, 653, 836, 880
SchI GAGTC 1 cut(s) 984
ScrFI CCNGG 5 cut(s) 136, 194, 343, 350, 602
SduI GDGCHC 2 cut(s) 309, 343
SfaNI GCATC 4 cut(s) 79, 535, 679, 1040
SfoI GGCGCC 1 cut(s) 502
SinI GGWCC 4 cut(s) 143, 653, 836, 880
SmiMI CAYNNNNRTG 3 cut(s) 296, 387, 510
Sse9I AATT 3 cut(s) 396, 518, 862
SsiI CCGC 6 cut(s) 93, 230, 279, 371, 435, 1022
SspDI GGCGCC 1 cut(s) 500
SspI AATATT 1 cut(s) 243
SspMI CTAG 3 cut(s) 441, 693, 840
StyD4I CCNGG 5 cut(s) 134, 192, 341, 348, 600
StyI CCWWGG 4 cut(s) 108, 273, 505, 1026
TaaI ACNGT 4 cut(s) 177, 295, 379, 680
TaiI ACGT 2 cut(s) 591, 794
TaqI TCGA 5 cut(s) 63, 641, 663, 927, 979
TasI AATT 3 cut(s) 396, 518, 862
TauI GCSGC 4 cut(s) 95, 281, 438, 1025
TfiI GAWTC 3 cut(s) 77, 131, 976
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 2 cut(s) 232, 300
TseFI GTSAC 2 cut(s) 674, 898
TseI GCWGC 4 cut(s) 482, 530, 548, 1019
Tsp45I GTSAC 2 cut(s) 674, 898
TspDTI ATGAA 5 cut(s) 42, 247, 371, 458, 585
TspGWI ACGGA 3 cut(s) 70, 71, 213
TspRI CASTG 2 cut(s) 232, 300
VneI GTGCAC 1 cut(s) 305
VpaK11BI GGWCC 4 cut(s) 143, 653, 836, 880
VspI ATTAAT 1 cut(s) 861
XspI CTAG 3 cut(s) 441, 693, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.