Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8510899.1

Orthogroup ID

OG0006353

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3153

Gene Structure 3153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8510899.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1238 bp

gaaatgagcaaggtagtggtgaagaattgaagaagaaggacgcggtagagttgtctaatgggagaaacactgaagttgaatacatagacgatactcctcttgacgcgatattccatgaagatgacagtgatgcgtttggagatgaatcggacagtgatgggtatctttcagaggactcaagtgaaatgcatcttgctgacagtgaaattgagaattctcaagaaggcaaccttgatggtagtagtggtgctttatctattcagaacgaggaaattcaattagagcttgtgaagaaaacaaaaaaactagacaaattgaaggagaaggatcctgaatttgccaactttttggaaagctatcataaggagagcgaacagttcagaaacaaagattatgctgatgaggatgaggatgagatgagtgatgataatatgcagccagagaatgtagacggtgtgaattttaattggggcaagctgctgacaagctcttctgttgattccttgtgtcaactagtcacagagcaacaaaatgtgtctgcacttactagtctattgaatgggtaccgggctgcatgccactatggagcagaatcaactagagtctttgatgcctattcaggccatggaattcagagtagtgaaacccttagcaagatattgatgttcatgcttaataaagctgataagatatttagggggctaatgggcctaccaagctcggattccaaaaaagagaagagtgtggatttgaagaagaataccaaatggagtacttttaagccactgataaagtcatatctgaggagtaccctttttctcctgaatcaggttgataactctgagatattggccttctccttggcacggatcagaacttctataaccttttttaatgcttttccttctttgctccgcagacttatcaagattgccgttcacttgtgggcaacagggagaggaactgtatcatctctatcctttctcatcatacgagatgtggcttctgtgtttcgctctgattacttcgacacctgctttgttaagacatataaatcgttccttggtcattgccaatttgtggagcctggtctgttccagcacatacaatttttaagaagttccattattgatctatgctctgtcgatgttcagaaagcatctagcaaagcattggtttgtatccagcaactttctaagataatgcagcagggtctacggacaaagaaaaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

411

Amino Acids

46.3

Weight (kDa)

5.07

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55510 AT3G55510
fragaria_vesca	FvH4_2g10660 FvH4_2g10660 FvH4_2g10660 FvH4_2g10660 FvH4_2g10660
malus_domestica	MD01G1111800.v1.1 MD07G1178300.v1.1
prunus_persica	Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1
pyrus_communis	pycom01g13910 pycom07g17200
rosa_chinensis	RchiOBHm_Chr5g0044521
rosa_laevigata	RLG00000034279
rosa_multiflora	Rmu_co8510899.1_g000001 Rmu_ssc0000151.1_g000024
rosa_roxburghii	Rroxscaffold_1G00036490
rosa_rugosa	Rorug05G0215000
rosa_samantha	Rh5AG299100 Rh5BG306600 Rh5CG333300 Rh5DG315900
rosa_wichuraiana	Rw5G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1042
Acc36I	ACCTGC	1 cut(s)	1042
Acc65I	GGTACC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	1080
AccI	GTMKAC	2 cut(s)	449, 1215
AccII	CGCG	2 cut(s)	43, 106
AciI	CCGC	2 cut(s)	43, 915
AclWI	GGATC	3 cut(s)	322, 335, 877
AcsI	RAATTY	5 cut(s)	213, 272, 334, 459, 629
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	3 cut(s)	565, 774, 810
AfiI	CCNNNNNNNGG	3 cut(s)	828, 866, 1080
AgsI	TTSAA	6 cut(s)	30, 79, 277, 318, 558, 753
AhlI	ACTAGT	2 cut(s)	513, 547
AjnI	CCWGG	1 cut(s)	1086
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AluBI	AGCT	6 cut(s)	285, 356, 477, 488, 682, 719
AluI	AGCT	6 cut(s)	285, 356, 477, 488, 682, 719
AlwI	GGATC	3 cut(s)	322, 335, 877
AoxI	GGCC	3 cut(s)	621, 708, 851
ApeKI	GCWGC	4 cut(s)	435, 477, 571, 1206
ApoI	RAATTY	5 cut(s)	213, 272, 334, 459, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	1021, 1053
Asp718I	GGTACC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	708
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	563
BbvI	GCAGC	4 cut(s)	447, 464, 558, 1218
BccI	CCATC	2 cut(s)	151, 229
BceAI	ACGGC	1 cut(s)	919
BciT130I	CCWGG	1 cut(s)	1088
BciVI	GTATCC	1 cut(s)	1192
BcnI	CCSGG	1 cut(s)	568
BcuI	ACTAGT	2 cut(s)	513, 547
BfaI	CTAG	5 cut(s)	307, 514, 548, 599, 1163
BfuAI	ACCTGC	1 cut(s)	1042
BfuI	GTATCC	1 cut(s)	1192
BisI	GCNGC	4 cut(s)	436, 478, 572, 1207
BlsI	GCNGC	4 cut(s)	437, 479, 573, 1208
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	2 cut(s)	568, 1088
BmgT120I	GGNCC	1 cut(s)	708
BmiI	GGNNCC	3 cut(s)	329, 565, 1085
BmrFI	CCNGG	2 cut(s)	568, 1088
BmsI	GCATC	4 cut(s)	120, 198, 600, 1168
Bpu10I	CCTNAGC	1 cut(s)	649
BpuEI	CTTGAG	2 cut(s)	162, 203
BpuMI	CCSGG	1 cut(s)	568
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	624, 860, 1062
Bsc4I	CCNNNNNNNGG	3 cut(s)	828, 866, 1080
Bse3DI	GCAATG	1 cut(s)	1068
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	1088
BseDI	CCNNGG	3 cut(s)	624, 860, 1062
BseGI	GGATG	2 cut(s)	411, 417
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	3 cut(s)	828, 866, 1080
BseMI	GCAATG	1 cut(s)	1068
BseMII	CTCAG	2 cut(s)	793, 833
BseRI	GAGGAG	2 cut(s)	86, 819
BseXI	GCAGC	4 cut(s)	447, 464, 558, 1218
BsgI	GTGCAG	1 cut(s)	524
Bsh1236I	CGCG	2 cut(s)	43, 106
BshFI	GGCC	3 cut(s)	623, 710, 853
BshNI	GGYRCC	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	567
BslI	CCNNNNNNNGG	3 cut(s)	828, 866, 1080
BsnI	GGCC	3 cut(s)	623, 710, 853
Bsp143I	GATC	3 cut(s)	327, 869, 1131
Bsp19I	CCATGG	1 cut(s)	624
BspACI	CCGC	2 cut(s)	43, 915
BspANI	GGCC	3 cut(s)	623, 710, 853
BspCNI	CTCAG	2 cut(s)	794, 834
BspFNI	CGCG	2 cut(s)	43, 106
BspLI	GGNNCC	3 cut(s)	329, 565, 1085
BspMI	ACCTGC	1 cut(s)	1042
BspPI	GGATC	3 cut(s)	322, 335, 877
BspQI	GCTCTTC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	1068
BssECI	CCNNGG	3 cut(s)	624, 860, 1062
BssMI	GATC	3 cut(s)	327, 869, 1131
BssT1I	CCWWGG	3 cut(s)	624, 860, 1062
Bst2UI	CCWGG	1 cut(s)	1088
Bst4CI	ACNGT	6 cut(s)	127, 154, 202, 377, 454, 966
Bst6I	CTCTTC	2 cut(s)	495, 733
BstC8I	GCNNGC	2 cut(s)	475, 576
BstDEI	CTNAG	4 cut(s)	649, 802, 842, 1196
BstDSI	CCRYGG	1 cut(s)	624
BstENI	CCTNNNNNAGG	1 cut(s)	826
BstF5I	GGATG	2 cut(s)	411, 417
BstFNI	CGCG	2 cut(s)	43, 106
BstKTI	GATC	3 cut(s)	330, 872, 1134
BstMBI	GATC	3 cut(s)	327, 869, 1131
BstMWI	GCNNNNNNNGC	1 cut(s)	716
BstNI	CCWGG	1 cut(s)	1088
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	566, 1086
BstUI	CGCG	2 cut(s)	43, 106
BstV1I	GCAGC	4 cut(s)	447, 464, 558, 1218
BstX2I	RGATCY	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	1192
BsuRI	GGCC	3 cut(s)	623, 710, 853
BtgI	CCRYGG	1 cut(s)	624
BtsCI	GGATG	2 cut(s)	411, 417
BtsIMutI	CAGTG	5 cut(s)	68, 132, 159, 207, 784
BveI	ACCTGC	1 cut(s)	1042
Cac8I	GCNNGC	2 cut(s)	475, 576
Cfr13I	GGNCC	1 cut(s)	708
CseI	GACGC	2 cut(s)	49, 112
Csp6I	GTAC	3 cut(s)	564, 773, 809
CviAII	CATG	4 cut(s)	115, 575, 625, 669
CviQI	GTAC	3 cut(s)	564, 773, 809
DdeI	CTNAG	4 cut(s)	649, 802, 842, 1196
DpnI	GATC	3 cut(s)	329, 871, 1133
DpnII	GATC	3 cut(s)	327, 869, 1131
Eam1104I	CTCTTC	2 cut(s)	495, 733
EarI	CTCTTC	2 cut(s)	495, 733
Eco130I	CCWWGG	3 cut(s)	624, 860, 1062
Eco57I	CTGAAG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	826
EcoRI	GAATTC	2 cut(s)	213, 629
EcoRII	CCWGG	1 cut(s)	1086
EcoT14I	CCWWGG	3 cut(s)	624, 860, 1062
EcoT22I	ATGCAT	1 cut(s)	191
ErhI	CCWWGG	3 cut(s)	624, 860, 1062
FaeI	CATG	4 cut(s)	118, 578, 628, 672
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	4 cut(s)	114, 574, 624, 668
FblI	GTMKAC	2 cut(s)	449, 1215
Fnu4HI	GCNGC	4 cut(s)	436, 478, 572, 1207
FokI	GGATG	2 cut(s)	418, 424
Fsp4HI	GCNGC	4 cut(s)	436, 478, 572, 1207
FspBI	CTAG	5 cut(s)	307, 514, 548, 599, 1163
GluI	GCNGC	4 cut(s)	436, 478, 572, 1207
HaeIII	GGCC	3 cut(s)	623, 710, 853
HapII	CCGG	1 cut(s)	567
HgaI	GACGC	2 cut(s)	49, 112
Hin1II	CATG	4 cut(s)	118, 578, 628, 672
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	7 cut(s)	145, 175, 499, 592, 602, 724, 825
HpaII	CCGG	1 cut(s)	567
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	4 cut(s)	450, 511, 939, 1216
Hpy188III	TCNNGA	5 cut(s)	100, 220, 331, 822, 927
Hpy8I	GTNNAC	4 cut(s)	450, 511, 939, 1216
HpyAV	CCTTC	6 cut(s)	30, 217, 312, 318, 864, 914
HpyCH4III	ACNGT	6 cut(s)	127, 154, 202, 377, 454, 966
HpyCH4V	TGCA	5 cut(s)	189, 435, 541, 574, 1206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	716
HpyF3I	CTNAG	4 cut(s)	649, 802, 842, 1196
Hsp92II	CATG	4 cut(s)	118, 578, 628, 672
KpnI	GGTACC	1 cut(s)	567
Kzo9I	GATC	3 cut(s)	327, 869, 1131
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	3 cut(s)	586, 917, 1083
Lsp1109I	GCAGC	4 cut(s)	447, 464, 558, 1218
LweI	GCATC	4 cut(s)	120, 198, 600, 1168
MaeI	CTAG	5 cut(s)	307, 514, 548, 599, 1163
MaeIII	GTNAC	1 cut(s)	516
MalI	GATC	3 cut(s)	329, 871, 1133
MboI	GATC	3 cut(s)	327, 869, 1131
MboII	GAAGA	9 cut(s)	34, 42, 45, 130, 303, 482, 750, 765, 768
MflI	RGATCY	1 cut(s)	327
MlyI	GAGTC	2 cut(s)	169, 611
MnlI	CCTC	7 cut(s)	107, 165, 261, 396, 402, 797, 952
Mph1103I	ATGCAT	1 cut(s)	191
MseI	TTAA	6 cut(s)	464, 674, 779, 893, 1043, 1114
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	1 cut(s)	567
MspR9I	CCNGG	2 cut(s)	568, 1088
MvaI	CCWGG	1 cut(s)	1088
MvnI	CGCG	2 cut(s)	43, 106
MwoI	GCNNNNNNNGC	1 cut(s)	716
NciI	CCSGG	1 cut(s)	568
NcoI	CCATGG	1 cut(s)	624
NdeII	GATC	3 cut(s)	327, 869, 1131
NlaIII	CATG	4 cut(s)	118, 578, 628, 672
NlaIV	GGNNCC	3 cut(s)	329, 565, 1085
NmuCI	GTSAC	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	191
NspI	RCATGY	1 cut(s)	578
PaeI	GCATGC	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	1042
PciSI	GCTCTTC	1 cut(s)	495
PfeI	GAWTC	5 cut(s)	145, 499, 592, 724, 825
PflMI	CCANNNNNTGG	1 cut(s)	1080
PkrI	GCNGC	4 cut(s)	437, 479, 573, 1208
PleI	GAGTC	2 cut(s)	169, 610
PpsI	GAGTC	2 cut(s)	169, 610
Psp6I	CCWGG	1 cut(s)	1086
PspGI	CCWGG	1 cut(s)	1086
PspN4I	GGNNCC	3 cut(s)	329, 565, 1085
PspPI	GGNCC	1 cut(s)	708
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	3 cut(s)	565, 774, 810
RsaNI	GTAC	3 cut(s)	564, 773, 809
RseI	CAYNNNNRTG	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	6 cut(s)	464, 674, 779, 893, 1043, 1114
SatI	GCNGC	4 cut(s)	436, 478, 572, 1207
Sau3AI	GATC	3 cut(s)	327, 869, 1131
Sau96I	GGNCC	1 cut(s)	708
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	2 cut(s)	169, 611
ScrFI	CCNGG	2 cut(s)	568, 1088
SfaNI	GCATC	4 cut(s)	120, 198, 600, 1168
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	177, 218
SmoI	CTYRAG	2 cut(s)	177, 218
SpeI	ACTAGT	2 cut(s)	513, 547
SphI	GCATGC	1 cut(s)	578
SsiI	CCGC	2 cut(s)	43, 915
SspMI	CTAG	5 cut(s)	307, 514, 548, 599, 1163
StyD4I	CCNGG	2 cut(s)	566, 1086
StyI	CCWWGG	3 cut(s)	624, 860, 1062
TaaI	ACNGT	6 cut(s)	127, 154, 202, 377, 454, 966
TaqI	TCGA	2 cut(s)	1028, 1145
TatI	WGTACW	1 cut(s)	772
TfiI	GAWTC	5 cut(s)	145, 499, 592, 724, 825
Tru1I	TTAA	6 cut(s)	464, 674, 779, 893, 1043, 1114
Tru9I	TTAA	6 cut(s)	464, 674, 779, 893, 1043, 1114
TscAI	CASTG	5 cut(s)	75, 132, 159, 207, 791
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	4 cut(s)	435, 477, 571, 1206
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	3 cut(s)	131, 158, 657
TspGWI	ACGGA	2 cut(s)	882, 1233
TspRI	CASTG	5 cut(s)	75, 132, 159, 207, 791
Van91I	CCANNNNNTGG	1 cut(s)	1080
XagI	CCTNNNNNAGG	1 cut(s)	826
XapI	RAATTY	5 cut(s)	213, 272, 334, 459, 629
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	449, 1215
XspI	CTAG	5 cut(s)	307, 514, 548, 599, 1163
ZrmI	AGTACT	1 cut(s)	774
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.