Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006353

Physical Location & Seq

Genomic Coordinates Reverse (-)

53243953 .. 53249912

Gene Structure 5960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGGAAACTGGGGAAGAAGGCCAGGAAGTTTTCCAAGAAGAATCTTCAGTCTGTCGAGAGAAGAAACCGCAAGTTGAAGTCCACCTTCAAAAAGAGAGGTCCCAAGAGAAATGAGCAAGCTAGTGGTGAAGAATTGAAGAAGAAGGACGCAGTAGAGTTGTCTAATGGGAGAAACACTGAAGTTGAATACATAGACGATACTCCTCTTGACGCAATATTCCATGAAGATGAGAGTGATGCGTTTGGAGATGAATCGGACAGTGATGGGTATCTTTCAGAGGACTCAAGTGAAATGCATCTTGCTGACAGTGAAATTGAGAATTCTCAAGAAGGCAACCTTGGTGGTAGTAGTGGTGCTTTATCTATTCAGAACAAGGAAATTCAATTAGAGCTTGTGAAGAAAACAAAAAAACTAGACAAATTGAAGGAGAAGGATCCTGAATTTGCCAATTTTTTGGAAAGCTATCATAAGGAGAGCGAACAGTTCAGAAACAAAGATTATGCTGATGAGGATGAAGATGAGATGAGTGATGATAATATGCAGCCAGAGAATGTAAACAGTGTGAATTTTAATTGGGGCAAGCTGCTGACAAGCTCTTATGTTGATTCCTTGTGTCAACTAGTCACAGAGCAACAAAATGTGTCTGCACTTACTAGTCTATTGAATGGGTACCGGGCTGCATGCCACTATGGAGCAGAATCAACTAGAGTATTTGATGCTTATTCAGGCCGTGGAATTCAGAATAGTGAAACCCTTAGCAAGATATTGATGTTCATGCTTAATGAAGCTGATAACATATTTAGGGGGCTAATGGGCCTACCAAGCTTGGATTCCAAAAAAGAGAAGAGTGTGGATTTGAAGAAGAATACCAAATGGAGTACTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

296

Amino Acids

33.52

Weight (kDa)

5.11

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55510 AT3G55510
fragaria_vesca	FvH4_2g10660 FvH4_2g10660 FvH4_2g10660 FvH4_2g10660 FvH4_2g10660
malus_domestica	MD01G1111800.v1.1 MD07G1178300.v1.1
prunus_persica	Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1 Prupe.2G217500_v2.0.a1
pyrus_communis	pycom01g13910 pycom07g17200
rosa_chinensis	RchiOBHm_Chr5g0044521
rosa_laevigata	RLG00000034279
rosa_multiflora	Rmu_co8510899.1_g000001 Rmu_ssc0000151.1_g000024
rosa_roxburghii	Rroxscaffold_1G00036490
rosa_rugosa	Rorug05G0215000
rosa_samantha	Rh5AG299100 Rh5BG306600 Rh5CG333300 Rh5DG315900
rosa_wichuraiana	Rw5G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	672
AccB1I	GGYRCC	1 cut(s)	672
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	431, 444
AcsI	RAATTY	5 cut(s)	322, 381, 443, 568, 738
AcuI	CTGAAG	2 cut(s)	32, 201
AfaI	GTAC	2 cut(s)	674, 883
AgsI	TTSAA	8 cut(s)	79, 91, 139, 188, 386, 427, 667, 862
AhlI	ACTAGT	2 cut(s)	622, 656
AjnI	CCWGG	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	4 cut(s)	324, 356, 817, 849
AluBI	AGCT	7 cut(s)	122, 394, 465, 586, 597, 791, 828
AluI	AGCT	7 cut(s)	122, 394, 465, 586, 597, 791, 828
AlwI	GGATC	2 cut(s)	431, 444
AoxI	GGCC	3 cut(s)	21, 730, 817
ApeKI	GCWGC	3 cut(s)	544, 586, 680
ApoI	RAATTY	5 cut(s)	322, 381, 443, 568, 738
Asp718I	GGTACC	1 cut(s)	672
AspS9I	GGNCC	2 cut(s)	101, 817
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	556, 573, 667
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	677
BcuI	ACTAGT	2 cut(s)	622, 656
BfaI	CTAG	5 cut(s)	123, 416, 623, 657, 708
BisI	GCNGC	3 cut(s)	545, 587, 681
BlsI	GCNGC	3 cut(s)	546, 588, 682
BmcAI	AGTACT	1 cut(s)	883
Bme1390I	CCNGG	2 cut(s)	25, 677
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	101, 817
BmiI	GGNNCC	3 cut(s)	103, 438, 674
BmrFI	CCNGG	2 cut(s)	25, 677
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	3 cut(s)	229, 307, 709
BmuI	ACTGGG	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	758
BpuEI	CTTGAG	2 cut(s)	271, 312
BpuMI	CCSGG	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	340, 733
Bse1I	ACTGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	340, 733
BseGI	GGATG	1 cut(s)	520
BseJI	GATNNNNATC	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	556, 573, 667
BsgI	GTGCAG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	23, 732, 819
BshNI	GGYRCC	1 cut(s)	672
BsiSI	CCGG	1 cut(s)	676
BslFI	GGGAC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	3 cut(s)	23, 732, 819
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	3 cut(s)	23, 732, 819
BspLI	GGNNCC	3 cut(s)	103, 438, 674
BspPI	GGATC	2 cut(s)	431, 444
BspT107I	GGYRCC	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	340, 733
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	4 cut(s)	263, 311, 486, 563
Bst6I	CTCTTC	1 cut(s)	842
BstC8I	GCNNGC	3 cut(s)	120, 584, 685
BstDEI	CTNAG	1 cut(s)	758
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	1 cut(s)	825
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	23, 675
BstV1I	GCAGC	3 cut(s)	556, 573, 667
BstX2I	RGATCY	1 cut(s)	436
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	23, 732, 819
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	4 cut(s)	177, 268, 316, 568
Cac8I	GCNNGC	3 cut(s)	120, 584, 685
Cfr13I	GGNCC	2 cut(s)	101, 817
CseI	GACGC	2 cut(s)	158, 221
Csp6I	GTAC	2 cut(s)	673, 882
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	3 cut(s)	224, 684, 778
CviQI	GTAC	2 cut(s)	673, 882
DdeI	CTNAG	1 cut(s)	758
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
Eco130I	CCWWGG	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	32, 201
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRI	GAATTC	2 cut(s)	322, 738
EcoRII	CCWGG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	3 cut(s)	227, 687, 781
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 324, 356
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	3 cut(s)	223, 683, 777
Fnu4HI	GCNGC	3 cut(s)	545, 587, 681
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	545, 587, 681
FspBI	CTAG	5 cut(s)	123, 416, 623, 657, 708
GluI	GCNGC	3 cut(s)	545, 587, 681
HaeIII	GGCC	3 cut(s)	23, 732, 819
HapII	CCGG	1 cut(s)	676
HgaI	GACGC	2 cut(s)	158, 221
Hin1II	CATG	3 cut(s)	227, 687, 781
HincII	GTYRAC	1 cut(s)	620
HindII	GTYRAC	1 cut(s)	620
HindIII	AAGCTT	1 cut(s)	826
HinfI	GANTC	6 cut(s)	43, 254, 284, 608, 701, 833
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	3 cut(s)	84, 559, 620
Hpy188I	TCNGA	5 cut(s)	259, 280, 372, 491, 744
Hpy188III	TCNNGA	4 cut(s)	58, 209, 329, 440
Hpy8I	GTNNAC	3 cut(s)	84, 559, 620
HpyAV	CCTTC	6 cut(s)	13, 97, 139, 326, 421, 427
HpyCH4III	ACNGT	4 cut(s)	263, 311, 486, 563
HpyCH4V	TGCA	4 cut(s)	298, 544, 650, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	825
HpyF3I	CTNAG	1 cut(s)	758
Hsp92II	CATG	3 cut(s)	227, 687, 781
KpnI	GGTACC	1 cut(s)	676
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	1 cut(s)	695
LpnPI	CCDG	6 cut(s)	10, 37, 453, 561, 689, 714
Lsp1109I	GCAGC	3 cut(s)	556, 573, 667
LweI	GCATC	3 cut(s)	229, 307, 709
MaeI	CTAG	5 cut(s)	123, 416, 623, 657, 708
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MflI	RGATCY	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	92, 216, 274, 505
Mph1103I	ATGCAT	1 cut(s)	300
MseI	TTAA	3 cut(s)	573, 783, 889
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	676
MspR9I	CCNGG	2 cut(s)	25, 677
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	825
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	227, 687, 781
NlaIV	GGNNCC	3 cut(s)	103, 438, 674
NmuCI	GTSAC	1 cut(s)	625
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	1 cut(s)	687
PaeI	GCATGC	1 cut(s)	687
PfeI	GAWTC	5 cut(s)	43, 254, 608, 701, 833
PkrI	GCNGC	3 cut(s)	546, 588, 682
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	3 cut(s)	103, 438, 674
PspPI	GGNCC	2 cut(s)	101, 817
PspPPI	RGGWCCY	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	2 cut(s)	674, 883
RsaNI	GTAC	2 cut(s)	673, 882
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	573, 783, 889
SatI	GCNGC	3 cut(s)	545, 587, 681
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	2 cut(s)	101, 817
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	25, 677
SfaNI	GCATC	3 cut(s)	229, 307, 709
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	286, 327
SmoI	CTYRAG	2 cut(s)	286, 327
SpeI	ACTAGT	2 cut(s)	622, 656
SphI	GCATGC	1 cut(s)	687
SsiI	CCGC	1 cut(s)	70
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	5 cut(s)	123, 416, 623, 657, 708
StyD4I	CCNGG	2 cut(s)	23, 675
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	4 cut(s)	263, 311, 486, 563
TaqI	TCGA	1 cut(s)	57
TatI	WGTACW	1 cut(s)	881
TfiI	GAWTC	5 cut(s)	43, 254, 608, 701, 833
Tru1I	TTAA	3 cut(s)	573, 783, 889
Tru9I	TTAA	3 cut(s)	573, 783, 889
TscAI	CASTG	4 cut(s)	184, 268, 316, 568
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	3 cut(s)	544, 586, 680
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	5 cut(s)	240, 267, 531, 766, 801
TspRI	CASTG	4 cut(s)	184, 268, 316, 568
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	5 cut(s)	322, 381, 443, 568, 738
XceI	RCATGY	1 cut(s)	687
XspI	CTAG	5 cut(s)	123, 416, 623, 657, 708
ZrmI	AGTACT	1 cut(s)	883
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.