AT3G56290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016179
Physical Location & Seq
Reverse (-)
20878446 .. 20879783
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56290.1

Sequence Viewer

Length: 522 bp
ATGGGTTTTAGAGCACTGCCTCTTCAACACAGCAGTGGGTTCATCTCCACGACCAAAGTATCCATCTCAAGAACCTCGCCCAGGATTTTCCGGAACCCTAGATGGGTCGTTGTCTCAGCAAAGCAAGAGAAAGATGAGGATAAGAAGAAGAATGAAGAGGAGACTTCGTTGTTTACTCAATTAACGGATGCCTTGGACTTCTCACAAGTTCGATCGGAGAAAGACGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTCGCAAGATGACCCAAGAACAGTATGGGGCATTGAGGAGAAAAATCGGAGGAACATACAAGGACTTTTTTAAATCCTACGTTGAAGTGGATGGGCAATATGTGGAGGAGGGATGGGTGGACAAAACATGTAAGATATGCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATGTCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGACTCTTCTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA-N

Protein Analysis

173

Amino Acids

19.92

Weight (kDa)

9.4

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56290
fragaria_vesca FvH4_7g25840
malus_domestica MD07G1232800.v1.1
prunus_persica Prupe.2G263300_v2.0.a1
pyrus_communis pycom07g21060
rosa_chinensis RchiOBHm_Chr1g0372111
rosa_laevigata RLG00000026922
rosa_multiflora Rmu_sc0001755.1_g000025
rosa_roxburghii Rroxscaffold_4G00285240
rosa_rugosa Rorug01G0369800
rosa_samantha Rh1AG378200 Rh1BG341500 Rh1CG354900 Rh1DG372600
rosa_wichuraiana Rw1G033270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 90
AcsI RAATTY 1 cut(s) 493
AfiI CCNNNNNNNGG 3 cut(s) 81, 103, 488
AflIII ACRYGT 1 cut(s) 392
AgsI TTSAA 3 cut(s) 26, 350, 476
AjnI CCWGG 1 cut(s) 80
AleI CACNNNNGTG 1 cut(s) 33
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 3 cut(s) 118, 155, 469
Ama87I CYCGRG 1 cut(s) 246
Aor13HI TCCGGA 1 cut(s) 90
ApoI RAATTY 1 cut(s) 493
AsuHPI GGTGA 2 cut(s) 434, 493
AvaI CYCGRG 1 cut(s) 246
BaeI ACNNNNGTAYC 2 cut(s) 42, 75
BbsI GAAGAC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 16
BccI CCATC 4 cut(s) 71, 96, 350, 372
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 70
BcoDI GTCTC 3 cut(s) 118, 155, 469
BfaI CTAG 2 cut(s) 99, 516
BfuI GTATCC 1 cut(s) 70
BlpI GCTNAGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 464
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu1102I GCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 80, 192
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 103, 488
BseAI TCCGGA 1 cut(s) 90
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 2 cut(s) 80, 192
BseGI GGATG 3 cut(s) 193, 361, 383
BseLI CCNNNNNNNGG 3 cut(s) 81, 103, 488
BseMII CTCAG 2 cut(s) 129, 219
BseRI GAGGAG 3 cut(s) 173, 316, 386
Bsh1285I CGRYCG 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 81, 103, 488
BsmAI GTCTC 3 cut(s) 118, 155, 469
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 1 cut(s) 212
Bsp1720I GCTNAGC 1 cut(s) 228
BspCNI CTCAG 2 cut(s) 128, 220
BspEI TCCGGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 80, 192
BssMI GATC 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 3 cut(s) 27, 150, 515
BstDEI CTNAG 2 cut(s) 115, 228
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 3 cut(s) 193, 361, 383
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 3 cut(s) 118, 155, 469
BstMBI GATC 1 cut(s) 212
BstMCI CGRYCG 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 464
BsuI GTATCC 1 cut(s) 70
BtsCI GGATG 3 cut(s) 193, 361, 383
BtsI GCAGTG 2 cut(s) 14, 40
BtsIMutI CAGTG 2 cut(s) 14, 40
CseI GACGC 1 cut(s) 233
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 2 cut(s) 393, 461
CviJI RGCY 3 cut(s) 232, 245, 254
CviKI_1 RGCY 3 cut(s) 232, 245, 254
DdeI CTNAG 2 cut(s) 115, 228
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
DraI TTTAAA 1 cut(s) 337
Eam1104I CTCTTC 3 cut(s) 27, 150, 515
EarI CTCTTC 3 cut(s) 27, 150, 515
Eco130I CCWWGG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 396, 464
FaiI YATR 7 cut(s) 291, 322, 366, 394, 403, 456, 462
FatI CATG 2 cut(s) 392, 460
FokI GGATG 3 cut(s) 200, 368, 390
FspBI CTAG 2 cut(s) 99, 516
HapII CCGG 1 cut(s) 91
HgaI GACGC 1 cut(s) 233
Hin1II CATG 2 cut(s) 396, 464
HinfI GANTC 1 cut(s) 507
HpaII CCGG 1 cut(s) 91
HphI GGTGA 2 cut(s) 434, 493
Hpy166II GTNNAC 3 cut(s) 174, 385, 439
Hpy188I TCNGA 2 cut(s) 217, 314
Hpy188III TCNNGA 5 cut(s) 69, 91, 248, 489, 516
Hpy8I GTNNAC 3 cut(s) 174, 385, 439
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 115, 228
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 2 cut(s) 396, 464
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 212
LpnPI CCDG 6 cut(s) 67, 94, 104, 249, 474, 517
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 99, 516
MaeII ACGT 1 cut(s) 345
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 7 cut(s) 14, 157, 160, 167, 464, 490, 502
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 179, 493
MlyI GAGTC 1 cut(s) 501
MroI TCCGGA 1 cut(s) 90
MseI TTAA 2 cut(s) 182, 336
MslI CAYNNNNRTG 1 cut(s) 33
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 212
NlaIII CATG 2 cut(s) 396, 464
NlaIV GGNNCC 1 cut(s) 95
NspI RCATGY 1 cut(s) 396
OliI CACNNNNGTG 1 cut(s) 33
PaeR7I CTCGAG 1 cut(s) 246
PciI ACATGT 1 cut(s) 392
Ple19I CGATCG 1 cut(s) 215
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PscI ACATGT 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 95
PvuI CGATCG 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 182, 336
Sau3AI GATC 1 cut(s) 212
SchI GAGTC 1 cut(s) 501
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 77, 234, 348
SfaNI GCATC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 246
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 67, 246
SmoI CTYRAG 2 cut(s) 67, 246
Sse9I AATT 2 cut(s) 179, 493
SspMI CTAG 2 cut(s) 99, 516
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 211, 247
TasI AATT 2 cut(s) 179, 493
Tru1I TTAA 2 cut(s) 182, 336
Tru9I TTAA 2 cut(s) 182, 336
TscAI CASTG 2 cut(s) 21, 40
TspDTI ATGAA 2 cut(s) 31, 168
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 2 cut(s) 21, 40
XagI CCTNNNNNAGG 1 cut(s) 79
XapI RAATTY 1 cut(s) 493
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 246
XspI CTAG 2 cut(s) 99, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.