MD07G1232800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016179
Physical Location & Seq
Forward (+)
30678009 .. 30679986
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1232800.v1.1.491

Sequence Viewer

Length: 543 bp
ATGGGAGTACTAATAAGAACGCTTCCTCTGAGCTCTCCGCATAGAAATTTTGCTTCTAATTTTGGAGCTGCAGAGAGATTGCCAAACAGTAAATTCATCAGCAGGAGCTCCCCCTCTCAGTTTAGAGTGCTGGCCAAAACAGAGAAGGGGGAGAAGGAGGAAGAACCAAAGAAGGAAACCAAACAGTCTTTCTTCAGCAGTGTGACAGAAGCACTTGATTTTTCTCAGACCAGGTCTGCAGAGGATGCTGTGCTTATTGAAGAAGCTAGGGATGCCACTAAATCTGGAGAGAGAATGTCCAGACAACAGTATGGGGCTTTGAGAAGGAAAATTGGAGGGACATACAAGGATTTCTTCAAAGACTATGTTGAGGTGGATGGGCAATATGTGGAGGATGGCTGGGTGGACAAGACGTGCAAGGTTTGCAAGAAAGACACGGGTGGCGAGGCCAGGCAAGTGGACAAGCTTGGAAGATATGTTCATGTGGCCTGTTTGGAGAAATCAAAATCCGGCAACTTTTTCACCAGACTTTTCTCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA-N

Protein Analysis

181

Amino Acids

20.3

Weight (kDa)

9.2

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56290
fragaria_vesca FvH4_7g25840
malus_domestica MD07G1232800.v1.1
prunus_persica Prupe.2G263300_v2.0.a1
pyrus_communis pycom07g21060
rosa_chinensis RchiOBHm_Chr1g0372111
rosa_laevigata RLG00000026922
rosa_multiflora Rmu_sc0001755.1_g000025
rosa_roxburghii Rroxscaffold_4G00285240
rosa_rugosa Rorug01G0369800
rosa_samantha Rh1AG378200 Rh1BG341500 Rh1CG354900 Rh1DG372600
rosa_wichuraiana Rw1G033270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 536
AciI CCGC 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 2 cut(s) 46, 92
AcuI CTGAAG 1 cut(s) 178
AfaI GTAC 1 cut(s) 9
AgsI TTSAA 2 cut(s) 260, 358
AjiI CACGTC 1 cut(s) 414
AjnI CCWGG 2 cut(s) 230, 449
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 5 cut(s) 33, 68, 108, 266, 466
AluI AGCT 5 cut(s) 33, 68, 108, 266, 466
Alw21I GWGCWC 2 cut(s) 35, 110
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 3 cut(s) 132, 447, 486
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 46, 92
AsuHPI GGTGA 1 cut(s) 514
BalI TGGCCA 1 cut(s) 134
BanII GRGCYC 2 cut(s) 35, 110
Bbv12I GWGCWC 2 cut(s) 35, 110
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 371, 389
BciT130I CCWGG 2 cut(s) 232, 451
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 2 cut(s) 69, 237
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 232, 451
BmgBI CACGTC 1 cut(s) 414
BmrFI CCNGG 2 cut(s) 232, 451
BmsI GCATC 2 cut(s) 235, 262
BpmI CTGGAG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 536
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 2 cut(s) 232, 451
BseGI GGATG 4 cut(s) 250, 277, 382, 400
BseMII CTCAG 3 cut(s) 20, 131, 239
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 399
BshFI GGCC 3 cut(s) 134, 449, 488
BsiHKAI GWGCWC 2 cut(s) 35, 110
BsiSI CCGG 2 cut(s) 510, 537
BslFI GGGAC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 3 cut(s) 134, 449, 488
Bsp1286I GDGCHC 2 cut(s) 35, 110
Bsp13I TCCGGA 1 cut(s) 536
BspACI CCGC 1 cut(s) 38
BspANI GGCC 3 cut(s) 134, 449, 488
BspCNI CTCAG 3 cut(s) 21, 130, 238
BspEI TCCGGA 1 cut(s) 536
BspMAI CTGCAG 2 cut(s) 73, 241
Bst2UI CCWGG 2 cut(s) 232, 451
Bst4CI ACNGT 3 cut(s) 89, 186, 309
BstAPI GCANNNNNTGC 2 cut(s) 245, 423
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 29, 117, 225
BstF5I GGATG 4 cut(s) 250, 277, 382, 400
BstMWI GCNNNNNNNGC 3 cut(s) 245, 272, 423
BstNI CCWGG 2 cut(s) 232, 451
BstSCI CCNGG 2 cut(s) 230, 449
BstSFI CTRYAG 2 cut(s) 69, 237
BstV1I GCAGC 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 457
BsuRI GGCC 3 cut(s) 134, 449, 488
BtrI CACGTC 1 cut(s) 414
BtsCI GGATG 4 cut(s) 250, 277, 382, 400
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 230
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 482
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 3 cut(s) 29, 117, 225
EaeI YGGCCR 1 cut(s) 132
Ecl136II GAGCTC 2 cut(s) 33, 108
Eco24I GRGCYC 2 cut(s) 35, 110
Eco53kI GAGCTC 2 cut(s) 33, 108
Eco57I CTGAAG 1 cut(s) 178
EcoICRI GAGCTC 2 cut(s) 33, 108
EcoRII CCWGG 2 cut(s) 230, 449
EcoT38I GRGCYC 2 cut(s) 35, 110
FaeI CATG 1 cut(s) 485
FaiI YATR 7 cut(s) 42, 312, 343, 366, 387, 477, 483
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 352
FatI CATG 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 4 cut(s) 257, 284, 389, 407
FriOI GRGCYC 2 cut(s) 35, 110
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 403
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 3 cut(s) 134, 449, 488
HapII CCGG 2 cut(s) 510, 537
Hin1II CATG 1 cut(s) 485
HindIII AAGCTT 1 cut(s) 464
HpaII CCGG 2 cut(s) 510, 537
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 2 cut(s) 406, 460
Hpy188I TCNGA 2 cut(s) 30, 228
Hpy188III TCNNGA 3 cut(s) 285, 300, 537
Hpy8I GTNNAC 2 cut(s) 406, 460
HpyAV CCTTC 4 cut(s) 139, 148, 166, 318
HpyCH4III ACNGT 3 cut(s) 89, 186, 309
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 4 cut(s) 71, 239, 417, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 272, 423
HpyF3I CTNAG 3 cut(s) 29, 117, 225
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 1 cut(s) 485
Kpn2I TCCGGA 1 cut(s) 536
LmnI GCTCC 3 cut(s) 65, 105, 113
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 235, 262
MabI ACCWGGT 1 cut(s) 230
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 202
MboII GAAGA 5 cut(s) 173, 184, 272, 346, 483
MhlI GDGCHC 2 cut(s) 35, 110
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 46, 58, 92, 330
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 8 cut(s) 36, 124, 151, 235, 329, 364, 385, 439
Mox20I TGGCCA 1 cut(s) 134
MroI TCCGGA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 2 cut(s) 510, 537
MspR9I CCNGG 2 cut(s) 232, 451
MvaI CCWGG 2 cut(s) 232, 451
MwoI GCNNNNNNNGC 3 cut(s) 245, 272, 423
NlaIII CATG 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 202
PflFI GACNNNGTC 1 cut(s) 232
PkrI GCNGC 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 35, 110
Psp6I CCWGG 2 cut(s) 230, 449
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 2 cut(s) 230, 449
PstI CTGCAG 2 cut(s) 73, 241
PsyI GACNNNGTC 1 cut(s) 232
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SacI GAGCTC 2 cut(s) 35, 110
SatI GCNGC 1 cut(s) 69
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 232, 451
SduI GDGCHC 2 cut(s) 35, 110
SetI ASST 9 cut(s) 35, 70, 110, 236, 268, 375, 416, 423, 468
SexAI ACCWGGT 1 cut(s) 230
SfaNI GCATC 2 cut(s) 235, 262
SfcI CTRYAG 2 cut(s) 69, 237
Sse9I AATT 4 cut(s) 46, 58, 92, 330
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 2 cut(s) 35, 110
StyD4I CCNGG 2 cut(s) 230, 449
TaaI ACNGT 3 cut(s) 89, 186, 309
TaiI ACGT 1 cut(s) 416
TasI AATT 4 cut(s) 46, 58, 92, 330
TatI WGTACW 1 cut(s) 7
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 85, 470
TspRI CASTG 1 cut(s) 205
Tth111I GACNNNGTC 1 cut(s) 232
XapI RAATTY 2 cut(s) 46, 92
XspI CTAG 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.