Rh1BG341500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016179
Physical Location & Seq
Forward (+)
47516143 .. 47517752
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG341500.1

Sequence Viewer

Length: 453 bp
ATGGGAGTACTAAGAACACTTCCTGTGACACCTGGAAGTTTCCTTTCAAATTTTGGAGCTGCAGAGAGTTCATCTAAATCCAACTTCAAGTTCAACAAGAAGTCCCAGTTCAGAGTTTTGGCCAAAACAGAGAAGGGTGAGAAGGCAGAAGAAGAAGAGCCCAAGAAAAGGAAACAGTCACTGTTTAGCAGTGTAACAGAGGCGCTTGATTTCTCTCAAACCAGGTCTGAAGAAGACGCTCTACTTCTCGAAGATGCGAGACAGGCCACCAAGTCTGGAGAACAGATGTCAAGAGAACAGTATGGGGCTCTCAGAAGGAAAATTGGAGGCACTTACAAGGATTTCTTCAAATCCTATGTTGAAGGTATATATGTTCATGAGACTATGAAATTTTATTTTGCGTGTAATTTCACTCTAAAGGAGACATCAGACATCCATGTATGTATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA-N

Protein Analysis

150

Amino Acids

17.02

Weight (kDa)

8.8

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56290
fragaria_vesca FvH4_7g25840
malus_domestica MD07G1232800.v1.1
prunus_persica Prupe.2G263300_v2.0.a1
pyrus_communis pycom07g21060
rosa_chinensis RchiOBHm_Chr1g0372111
rosa_laevigata RLG00000026922
rosa_multiflora Rmu_sc0001755.1_g000025
rosa_roxburghii Rroxscaffold_4G00285240
rosa_rugosa Rorug01G0369800
rosa_samantha Rh1AG378200 Rh1BG341500 Rh1CG354900 Rh1DG372600
rosa_wichuraiana Rw1G033270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 49, 389
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 5 cut(s) 48, 88, 94, 349, 362
AjnI CCWGG 2 cut(s) 31, 221
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 3 cut(s) 253, 374, 416
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 2 cut(s) 120, 264
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 49, 389
AspLEI GCGC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 149
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 2 cut(s) 162, 310
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 33, 223
BcoDI GTCTC 3 cut(s) 253, 374, 416
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 33, 223
BmrFI CCNGG 2 cut(s) 33, 223
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 33, 223
BseGI GGATG 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 2 cut(s) 122, 266
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 3 cut(s) 253, 374, 416
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 2 cut(s) 122, 266
Bsp1286I GDGCHC 2 cut(s) 162, 310
BspANI GGCC 2 cut(s) 122, 266
BspCNI CTCAG 1 cut(s) 324
BspHI TCATGA 1 cut(s) 376
BspMAI CTGCAG 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 106
Bst2UI CCWGG 2 cut(s) 33, 223
Bst4CI ACNGT 3 cut(s) 177, 183, 300
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 11, 311
BstF5I GGATG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstMAI GTCTC 3 cut(s) 253, 374, 416
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 2 cut(s) 33, 223
BstSCI CCNGG 2 cut(s) 31, 221
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 122, 266
BtsCI GGATG 1 cut(s) 432
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 179, 196
CaiI CAGNNNCTG 1 cut(s) 181
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 205
CseI GACGC 1 cut(s) 245
CsiI ACCWGGT 1 cut(s) 221
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 377, 437
CviJI RGCY 5 cut(s) 59, 122, 160, 266, 308
CviKI_1 RGCY 5 cut(s) 59, 122, 160, 266, 308
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 11, 311
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 162, 310
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 31, 221
EcoT38I GRGCYC 2 cut(s) 162, 310
FaeI CATG 2 cut(s) 380, 440
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 88
FatI CATG 2 cut(s) 376, 436
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 2 cut(s) 162, 310
Fsp4HI GCNGC 1 cut(s) 60
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 2 cut(s) 122, 266
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 380, 440
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 4 cut(s) 113, 229, 314, 430
Hpy188III TCNNGA 4 cut(s) 248, 276, 291, 377
HpyAV CCTTC 4 cut(s) 127, 136, 309, 356
HpyCH4III ACNGT 3 cut(s) 177, 183, 300
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 2 cut(s) 11, 311
Hsp92II CATG 2 cut(s) 380, 440
HspAI GCGC 1 cut(s) 203
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 18, 36, 45, 119, 208, 235, 248, 261
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 244
MabI ACCWGGT 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 25, 177, 193
MboII GAAGA 7 cut(s) 161, 164, 167, 242, 245, 263, 337
MhlI GDGCHC 2 cut(s) 162, 310
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 4 cut(s) 49, 321, 389, 406
MluNI TGGCCA 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 2 cut(s) 193, 320
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 33, 223
MvaI CCWGG 2 cut(s) 33, 223
MwoI GCNNNNNNNGC 1 cut(s) 263
NlaIII CATG 2 cut(s) 380, 440
NmuCI GTSAC 2 cut(s) 25, 177
PagI TCATGA 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 31, 221
PspGI CCWGG 2 cut(s) 31, 221
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 181
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 150
SatI GCNGC 1 cut(s) 60
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 33, 223
SduI GDGCHC 2 cut(s) 162, 310
SetI ASST 4 cut(s) 34, 61, 227, 367
SexAI ACCWGGT 1 cut(s) 221
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 60
Sse9I AATT 4 cut(s) 49, 321, 389, 406
StyD4I CCNGG 2 cut(s) 31, 221
TaaI ACNGT 3 cut(s) 177, 183, 300
TaqI TCGA 1 cut(s) 249
TasI AATT 4 cut(s) 49, 321, 389, 406
TatI WGTACW 1 cut(s) 7
TscAI CASTG 2 cut(s) 186, 196
TseFI GTSAC 2 cut(s) 25, 177
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 2 cut(s) 25, 177
TspDTI ATGAA 3 cut(s) 60, 365, 401
TspRI CASTG 2 cut(s) 186, 196
XapI RAATTY 2 cut(s) 49, 389
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.