RLG00000026922

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016179
Physical Location & Seq
Reverse (-)
7012621 .. 7013603
983 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026922

Sequence Viewer

Length: 543 bp
ATGGGAGTACTAATAAGAACACTTCCTGTGACACCCCCACGTGGAAGTTTCCTTTCAAATTTTGGAGCTGCAGAGAGTTTATCTAAATCCAACTTCAAGTTCAACAAGAAGTCCCAGTTCAGAGTTTTGGCCAAAACAGAGAAGGGTGAGAAGGAGGAAGAAGAAGAGCCCGAGAAAAGGAAACAGTCACTGTTTAGCAGTGTAACAGAGGCGCTTGATTTCTCTCAAACCAGGTCTGAAGAAGACGCTCTACTTCTCGAAGATGCGAGACAGGCCACCAAGTCTGGAGAACAGATGTCAAGAGAACAGTATGGGGCTCTCAGAAGGAAAATTGGAGGCACTTACAAGGATTTCTTCAAATCCTATGTTGAAGTGGATGGGCAATATGTAGAAGAAGGGTGGGTCGACAAAACGTGCAAGGTGTGCAAGAAGGACACCCGCGGCGAGCCAAGGCAAGTAGACAAGCTCGGAAGATACGTTCATGTGGCGTGTATGGGGAAACAGAAATCCGGCAACTTCTTTACCAGACTTTTCTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA-N

Protein Analysis

181

Amino Acids

20.51

Weight (kDa)

9.17

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56290
fragaria_vesca FvH4_7g25840
malus_domestica MD07G1232800.v1.1
prunus_persica Prupe.2G263300_v2.0.a1
pyrus_communis pycom07g21060
rosa_chinensis RchiOBHm_Chr1g0372111
rosa_laevigata RLG00000026922
rosa_multiflora Rmu_sc0001755.1_g000025
rosa_roxburghii Rroxscaffold_4G00285240
rosa_rugosa Rorug01G0369800
rosa_samantha Rh1AG378200 Rh1BG341500 Rh1CG354900 Rh1DG372600
rosa_wichuraiana Rw1G033270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 405, 459
AccII CGCG 1 cut(s) 441
AciI CCGC 2 cut(s) 439, 441
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 258
AcvI CACGTG 1 cut(s) 41
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 41, 177
AgsI TTSAA 5 cut(s) 57, 97, 103, 358, 371
AjnI CCWGG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 2 cut(s) 68, 466
AluI AGCT 2 cut(s) 68, 466
Alw26I GTCTC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 2 cut(s) 129, 273
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 58
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 170
BalI TGGCCA 1 cut(s) 131
BanII GRGCYC 2 cut(s) 171, 319
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
BbrPI CACGTG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 215
BisI GCNGC 2 cut(s) 69, 442
BlsI GCNGC 2 cut(s) 70, 443
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 520
BsaAI YACGTR 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 439, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 177
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 439, 449
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 2 cut(s) 41, 177
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 2 cut(s) 131, 275
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 510
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 41, 177
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 131, 275
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 171, 319
BspACI CCGC 2 cut(s) 439, 441
BspANI GGCC 2 cut(s) 131, 275
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 1 cut(s) 441
BspMAI CTGCAG 1 cut(s) 73
BspQI GCTCTTC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 439, 449
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 186, 192, 309
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 423
BstBAI YACGTR 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 441
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 272, 423
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 131, 275
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 188, 205
Cac8I GCNNGC 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 214
Cfr42I CCGCGG 1 cut(s) 442
CseI GACGC 1 cut(s) 254
CsiI ACCWGGT 1 cut(s) 230
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 482
CviJI RGCY 7 cut(s) 68, 131, 169, 275, 317, 448, 466
CviKI_1 RGCY 7 cut(s) 68, 131, 169, 275, 317, 448, 466
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 449
Eco24I GRGCYC 2 cut(s) 171, 319
Eco57I CTGAAG 1 cut(s) 258
Eco72I CACGTG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 449
EcoT38I GRGCYC 2 cut(s) 171, 319
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 1 cut(s) 485
FaiI YATR 5 cut(s) 312, 366, 387, 483, 494
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 97
FatI CATG 1 cut(s) 481
FauI CCCGC 1 cut(s) 446
FblI GTMKAC 2 cut(s) 405, 459
Fnu4HI GCNGC 2 cut(s) 69, 442
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 2 cut(s) 171, 319
Fsp4HI GCNGC 2 cut(s) 69, 442
GlaI GCGC 1 cut(s) 213
GluI GCNGC 2 cut(s) 69, 442
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 2 cut(s) 131, 275
HapII CCGG 1 cut(s) 510
HgaI GACGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 485
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HpaII CCGG 1 cut(s) 510
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 406, 460
Hpy188I TCNGA 4 cut(s) 122, 238, 323, 470
Hpy188III TCNNGA 3 cut(s) 257, 285, 300
Hpy8I GTNNAC 2 cut(s) 406, 460
HpyAV CCTTC 5 cut(s) 136, 145, 318, 389, 424
HpyCH4III ACNGT 3 cut(s) 186, 192, 309
HpyCH4IV ACGT 3 cut(s) 40, 413, 477
HpyCH4V TGCA 3 cut(s) 71, 417, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 423
HpyF3I CTNAG 1 cut(s) 320
HpySE526I ACGT 3 cut(s) 40, 413, 477
Hsp92II CATG 1 cut(s) 485
HspAI GCGC 1 cut(s) 212
KspI CCGCGG 1 cut(s) 442
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 8 cut(s) 39, 128, 217, 244, 257, 270, 523, 538
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 253
MabI ACCWGGT 1 cut(s) 230
MaeII ACGT 3 cut(s) 40, 413, 477
MaeIII GTNAC 3 cut(s) 28, 186, 202
MboII GAAGA 9 cut(s) 170, 173, 176, 251, 254, 272, 346, 404, 483
MhlI GDGCHC 2 cut(s) 171, 319
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 2 cut(s) 58, 330
MluNI TGGCCA 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 3 cut(s) 148, 202, 329
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 1 cut(s) 510
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 272, 423
NlaIII CATG 1 cut(s) 485
NmuCI GTSAC 2 cut(s) 28, 186
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PkrI GCNGC 2 cut(s) 70, 443
PmaCI CACGTG 1 cut(s) 41
PmlI CACGTG 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 230
PspCI CACGTG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 230
PstI CTGCAG 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SacII CCGCGG 1 cut(s) 442
SalI GTCGAC 1 cut(s) 404
SapI GCTCTTC 1 cut(s) 159
SatI GCNGC 2 cut(s) 69, 442
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 2 cut(s) 171, 319
SetI ASST 7 cut(s) 43, 70, 236, 416, 423, 468, 480
SexAI ACCWGGT 1 cut(s) 230
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 69
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
Sse9I AATT 2 cut(s) 58, 330
SsiI CCGC 2 cut(s) 439, 441
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 3 cut(s) 186, 192, 309
TaiI ACGT 3 cut(s) 43, 416, 480
TaqI TCGA 2 cut(s) 258, 405
TasI AATT 2 cut(s) 58, 330
TatI WGTACW 1 cut(s) 7
TauI GCSGC 1 cut(s) 444
TscAI CASTG 2 cut(s) 195, 205
TseFI GTSAC 2 cut(s) 28, 186
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 2 cut(s) 28, 186
TspDTI ATGAA 1 cut(s) 470
TspRI CASTG 2 cut(s) 195, 205
XapI RAATTY 1 cut(s) 58
XmiI GTMKAC 2 cut(s) 405, 459
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.