Rh1AG378200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016179
Physical Location & Seq
Forward (+)
61033975 .. 61035630
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG378200.1

Sequence Viewer

Length: 459 bp
ATGGGAGTACTAAGAACACTTCCTGTGACACCCCCACGTGGAAGTTTCCTTTCAAATTTTGGAGCTGCAGAGAGTTCATCTAAATCCAACTTCAAGTTCAACAAGAAGTCCCAGTTCAGAGTTTTGGCCAAAACAGAGAAGGGTGAGAAGGAAGAAGAAGAAGAGCCCAAGAAAAGGAAACAGTCACTGTTTAGCAGTGTAACAGAGGCGCTTGATTTCTCTCAAACCAGGTCTGAAGAAGACGCTCTACTTCTCGAAGATGCGAGACAGGCCACCAAGTCTGGAGAACAGATGTCAAGAGAACAGTATGGGGCTCTCAGAAGGAAAATTGGAGGCACTTACAAGGATTTCTTCAAATCCTATGTTGAAGGTATATATGTTCATGAGACTATGAAATTTTATTTTGCGTGTAATTTCACTCTAAAGGAGACATCAGACATCCTTGTATGTATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA-N

Protein Analysis

152

Amino Acids

17.31

Weight (kDa)

8.8

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56290
fragaria_vesca FvH4_7g25840
malus_domestica MD07G1232800.v1.1
prunus_persica Prupe.2G263300_v2.0.a1
pyrus_communis pycom07g21060
rosa_chinensis RchiOBHm_Chr1g0372111
rosa_laevigata RLG00000026922
rosa_multiflora Rmu_sc0001755.1_g000025
rosa_roxburghii Rroxscaffold_4G00285240
rosa_rugosa Rorug01G0369800
rosa_samantha Rh1AG378200 Rh1BG341500 Rh1CG354900 Rh1DG372600
rosa_wichuraiana Rw1G033270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 2 cut(s) 55, 395
AcuI CTGAAG 1 cut(s) 255
AcvI CACGTG 1 cut(s) 38
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 38, 174
AgsI TTSAA 5 cut(s) 54, 94, 100, 355, 368
AjnI CCWGG 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 259, 380, 422
AlwNI CAGNNNCTG 1 cut(s) 187
AoxI GGCC 2 cut(s) 126, 270
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 2 cut(s) 55, 395
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 155
BalI TGGCCA 1 cut(s) 128
BanII GRGCYC 2 cut(s) 168, 316
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbrPI CACGTG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 229
BcoDI GTCTC 3 cut(s) 259, 380, 422
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 212
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 38
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 174
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 38, 174
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 2 cut(s) 128, 272
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 38, 174
BsmAI GTCTC 3 cut(s) 259, 380, 422
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 2 cut(s) 128, 272
Bsp1286I GDGCHC 2 cut(s) 168, 316
BspANI GGCC 2 cut(s) 128, 272
BspCNI CTCAG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 70
BspQI GCTCTTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 183, 189, 306
Bst6I CTCTTC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 11, 317
BstF5I GGATG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstMAI GTCTC 3 cut(s) 259, 380, 422
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 2 cut(s) 128, 272
BtsCI GGATG 1 cut(s) 438
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 185, 202
CaiI CAGNNNCTG 1 cut(s) 187
CciI TCATGA 1 cut(s) 382
CfoI GCGC 1 cut(s) 211
CseI GACGC 1 cut(s) 251
CsiI ACCWGGT 1 cut(s) 227
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 383
CviJI RGCY 5 cut(s) 65, 128, 166, 272, 314
CviKI_1 RGCY 5 cut(s) 65, 128, 166, 272, 314
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 11, 317
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco24I GRGCYC 2 cut(s) 168, 316
Eco57I CTGAAG 1 cut(s) 255
Eco72I CACGTG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 168, 316
FaeI CATG 1 cut(s) 386
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 1 cut(s) 94
FatI CATG 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 2 cut(s) 168, 316
Fsp4HI GCNGC 1 cut(s) 66
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 2 cut(s) 128, 272
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 386
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 4 cut(s) 119, 235, 320, 436
Hpy188III TCNNGA 4 cut(s) 254, 282, 297, 383
HpyAV CCTTC 4 cut(s) 133, 142, 315, 362
HpyCH4III ACNGT 3 cut(s) 183, 189, 306
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 11, 317
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 1 cut(s) 386
HspAI GCGC 1 cut(s) 209
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 6 cut(s) 36, 125, 214, 241, 254, 267
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 250
MabI ACCWGGT 1 cut(s) 227
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 3 cut(s) 25, 183, 199
MboII GAAGA 8 cut(s) 164, 167, 170, 173, 248, 251, 269, 343
MhlI GDGCHC 2 cut(s) 168, 316
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 4 cut(s) 55, 327, 395, 412
MluNI TGGCCA 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 2 cut(s) 199, 326
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 269
NlaIII CATG 1 cut(s) 386
NmuCI GTSAC 2 cut(s) 25, 183
PagI TCATGA 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 67
PmaCI CACGTG 1 cut(s) 38
PmlI CACGTG 1 cut(s) 38
Ppu21I YACGTR 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 227
PspCI CACGTG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 227
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 187
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 156
SatI GCNGC 1 cut(s) 66
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 2 cut(s) 168, 316
SetI ASST 4 cut(s) 40, 67, 233, 373
SexAI ACCWGGT 1 cut(s) 227
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 66
Sse9I AATT 4 cut(s) 55, 327, 395, 412
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 3 cut(s) 183, 189, 306
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 55, 327, 395, 412
TatI WGTACW 1 cut(s) 7
TscAI CASTG 2 cut(s) 192, 202
TseFI GTSAC 2 cut(s) 25, 183
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 2 cut(s) 25, 183
TspDTI ATGAA 3 cut(s) 66, 371, 407
TspRI CASTG 2 cut(s) 192, 202
XapI RAATTY 2 cut(s) 55, 395
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.