pycom07g21060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0016179
Physical Location & Seq
Forward (+)
22939026 .. 22940558
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21060.1

Sequence Viewer

Length: 543 bp
ATGGGAGTACTAATAAGAACACTTCCTCTGAGCTCTCCGCATAGAAATTTTTCTTCTAATTTTGGAGCTGCAGAGAGATTGCCGAACGGTGGATTCATCAGCAGGAGCTCCTCCTCTCAGTTTAGAGTGCTGGCCAAAACAGAGAAGGGGGAGAAGGAGGAAGAACCAAAGAAGGAAACCAAACAGTCTTTCTTCAGCAGTGTGACAGAAGCACTTGATTTTTCTCAGACCAGGTCTGCAGAGGATGCTATGCTTATTGAAGAAGCTAGGGATGCCACTAAATCCGGAGAGAGAATGTCCAGACAACAGTATGGGGCTTTGAGAAGGAAAATTGGAGGGACATACAAGGATTTCTTCAAAGACTATGTTGAGGTGGATGGGCAATATGTGGAGGATGGCTGGGTGGACAAGACTTGCAAGGTTTGCAAGAAAGACACGGGTGGCGAGGCCAGGCAAGTGGACAAGCTTGGAAGATATGTTCATGTAGCCTGTTTGGAGAAATCAAAATCCGGCAATTTTTTCACCAGACTTTTCTCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA-N

Protein Analysis

181

Amino Acids

20.24

Weight (kDa)

9.08

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56290
fragaria_vesca FvH4_7g25840
malus_domestica MD07G1232800.v1.1
prunus_persica Prupe.2G263300_v2.0.a1
pyrus_communis pycom07g21060
rosa_chinensis RchiOBHm_Chr1g0372111
rosa_laevigata RLG00000026922
rosa_multiflora Rmu_sc0001755.1_g000025
rosa_roxburghii Rroxscaffold_4G00285240
rosa_rugosa Rorug01G0369800
rosa_samantha Rh1AG378200 Rh1BG341500 Rh1CG354900 Rh1DG372600
rosa_wichuraiana Rw1G033270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 284, 536
AciI CCGC 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 178
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 260, 358
AjnI CCWGG 2 cut(s) 230, 449
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 5 cut(s) 33, 68, 108, 266, 466
AluI AGCT 5 cut(s) 33, 68, 108, 266, 466
Alw21I GWGCWC 2 cut(s) 35, 110
Aor13HI TCCGGA 2 cut(s) 284, 536
AoxI GGCC 2 cut(s) 132, 447
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 514
BalI TGGCCA 1 cut(s) 134
BanII GRGCYC 2 cut(s) 35, 110
Bbv12I GWGCWC 2 cut(s) 35, 110
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 371, 389
BciT130I CCWGG 2 cut(s) 232, 451
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 2 cut(s) 69, 237
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 232, 451
BmrFI CCNGG 2 cut(s) 232, 451
BmsI GCATC 2 cut(s) 235, 262
BsaWI WCCGGW 2 cut(s) 284, 536
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseAI TCCGGA 2 cut(s) 284, 536
BseBI CCWGG 2 cut(s) 232, 451
BseGI GGATG 4 cut(s) 250, 277, 382, 400
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 3 cut(s) 20, 131, 239
BseRI GAGGAG 2 cut(s) 100, 103
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 399
BshFI GGCC 2 cut(s) 134, 449
BsiHKAI GWGCWC 2 cut(s) 35, 110
BsiSI CCGG 3 cut(s) 285, 510, 537
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 2 cut(s) 134, 449
Bsp1286I GDGCHC 2 cut(s) 35, 110
Bsp13I TCCGGA 2 cut(s) 284, 536
BspACI CCGC 1 cut(s) 38
BspANI GGCC 2 cut(s) 134, 449
BspCNI CTCAG 3 cut(s) 21, 130, 238
BspEI TCCGGA 2 cut(s) 284, 536
BspMAI CTGCAG 2 cut(s) 73, 241
Bst2UI CCWGG 2 cut(s) 232, 451
Bst4CI ACNGT 3 cut(s) 89, 186, 309
BstAPI GCANNNNNTGC 2 cut(s) 245, 423
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 29, 117, 225
BstF5I GGATG 4 cut(s) 250, 277, 382, 400
BstMWI GCNNNNNNNGC 3 cut(s) 245, 272, 423
BstNI CCWGG 2 cut(s) 232, 451
BstSCI CCNGG 2 cut(s) 230, 449
BstSFI CTRYAG 2 cut(s) 69, 237
BstV1I GCAGC 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 457
BsuRI GGCC 2 cut(s) 134, 449
BtsCI GGATG 4 cut(s) 250, 277, 382, 400
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 230
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 482
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 3 cut(s) 29, 117, 225
EaeI YGGCCR 1 cut(s) 132
Ecl136II GAGCTC 2 cut(s) 33, 108
Eco24I GRGCYC 2 cut(s) 35, 110
Eco53kI GAGCTC 2 cut(s) 33, 108
Eco57I CTGAAG 1 cut(s) 178
EcoICRI GAGCTC 2 cut(s) 33, 108
EcoRII CCWGG 2 cut(s) 230, 449
EcoT38I GRGCYC 2 cut(s) 35, 110
FaeI CATG 1 cut(s) 485
FaiI YATR 8 cut(s) 42, 251, 312, 343, 366, 387, 477, 483
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 352
FatI CATG 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 4 cut(s) 257, 284, 389, 407
FriOI GRGCYC 2 cut(s) 35, 110
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 403
HaeIII GGCC 2 cut(s) 134, 449
HapII CCGG 3 cut(s) 285, 510, 537
Hin1II CATG 1 cut(s) 485
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 1 cut(s) 93
HpaII CCGG 3 cut(s) 285, 510, 537
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 2 cut(s) 406, 460
Hpy188I TCNGA 2 cut(s) 30, 228
Hpy188III TCNNGA 3 cut(s) 285, 300, 537
Hpy8I GTNNAC 2 cut(s) 406, 460
HpyAV CCTTC 4 cut(s) 139, 148, 166, 318
HpyCH4III ACNGT 3 cut(s) 89, 186, 309
HpyCH4V TGCA 4 cut(s) 71, 239, 417, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 272, 423
HpyF3I CTNAG 3 cut(s) 29, 117, 225
Hsp92II CATG 1 cut(s) 485
Kpn2I TCCGGA 2 cut(s) 284, 536
LmnI GCTCC 3 cut(s) 65, 105, 113
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 235, 262
MabI ACCWGGT 1 cut(s) 230
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 202
MboII GAAGA 6 cut(s) 45, 173, 184, 272, 346, 483
MhlI GDGCHC 2 cut(s) 35, 110
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 46, 58, 330, 514
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 9 cut(s) 36, 121, 124, 151, 235, 329, 364, 385, 439
Mox20I TGGCCA 1 cut(s) 134
MroI TCCGGA 2 cut(s) 284, 536
MroXI GAANNNNTTC 1 cut(s) 49
MscI TGGCCA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 3 cut(s) 285, 510, 537
MspR9I CCNGG 2 cut(s) 232, 451
MvaI CCWGG 2 cut(s) 232, 451
MwoI GCNNNNNNNGC 3 cut(s) 245, 272, 423
NlaIII CATG 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 232
PkrI GCNGC 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 35, 110
Psp6I CCWGG 2 cut(s) 230, 449
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 2 cut(s) 230, 449
PstI CTGCAG 2 cut(s) 73, 241
PsyI GACNNNGTC 1 cut(s) 232
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SacI GAGCTC 2 cut(s) 35, 110
SatI GCNGC 1 cut(s) 69
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 232, 451
SduI GDGCHC 2 cut(s) 35, 110
SetI ASST 8 cut(s) 35, 70, 110, 236, 268, 375, 423, 468
SexAI ACCWGGT 1 cut(s) 230
SfaNI GCATC 2 cut(s) 235, 262
SfcI CTRYAG 2 cut(s) 69, 237
Sse9I AATT 4 cut(s) 46, 58, 330, 514
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 2 cut(s) 35, 110
StyD4I CCNGG 2 cut(s) 230, 449
TaaI ACNGT 3 cut(s) 89, 186, 309
TasI AATT 4 cut(s) 46, 58, 330, 514
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 1 cut(s) 93
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 85, 470
TspRI CASTG 1 cut(s) 205
Tth111I GACNNNGTC 1 cut(s) 232
XapI RAATTY 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.