Scavenger mRNA decapping enzyme C-term binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G56490 |
| fragaria_vesca | FvH4_1g29350 |
| malus_domestica | MD14G1092000.v1.1 |
| prunus_persica | Prupe.7G023000_v2.0.a1 |
| pyrus_communis | pycom12g09270 pycom14g08980 |
| rosa_chinensis | RchiOBHm_Chr3g0494981 |
| rosa_laevigata | RLG00000022657 |
| rosa_multiflora | Rmu_sc0003482.1_g000010 Rmu_sc0006474.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00390860 |
| rosa_rugosa | Rorug03G0269000 |
| rosa_samantha | Rh3AG318200 Rh3BG353000 Rh3CG350000 Rh3DG352300 |
| rosa_wichuraiana | Rw3G027730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 49 |
| Acc36I | ACCTGC | 1 cut(s) | 49 |
| AciI | CCGC | 3 cut(s) | 48, 84, 289 |
| AcyI | GRCGYC | 1 cut(s) | 418 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 256, 337 |
| AjnI | CCWGG | 2 cut(s) | 195, 436 |
| AluBI | AGCT | 3 cut(s) | 74, 176, 310 |
| AluI | AGCT | 3 cut(s) | 74, 176, 310 |
| AoxI | GGCC | 5 cut(s) | 238, 247, 286, 328, 431 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| AspS9I | GGNCC | 3 cut(s) | 200, 286, 365 |
| AsuHPI | GGTGA | 1 cut(s) | 30 |
| AvaII | GGWCC | 2 cut(s) | 200, 365 |
| BbvCI | CCTCAGC | 1 cut(s) | 261 |
| BbvI | GCAGC | 1 cut(s) | 61 |
| BccI | CCATC | 3 cut(s) | 148, 230, 356 |
| BceAI | ACGGC | 1 cut(s) | 35 |
| BciT130I | CCWGG | 2 cut(s) | 197, 438 |
| BfaI | CTAG | 1 cut(s) | 332 |
| BfuAI | ACCTGC | 1 cut(s) | 49 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 56, 246 |
| BisI | GCNGC | 3 cut(s) | 75, 84, 289 |
| BlsI | GCNGC | 3 cut(s) | 76, 85, 290 |
| Bme1390I | CCNGG | 2 cut(s) | 197, 438 |
| Bme18I | GGWCC | 2 cut(s) | 200, 365 |
| BmgT120I | GGNCC | 3 cut(s) | 200, 286, 365 |
| BmiI | GGNNCC | 1 cut(s) | 201 |
| BmrFI | CCNGG | 2 cut(s) | 197, 438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 261 |
| BpuEI | CTTGAG | 1 cut(s) | 354 |
| BsaHI | GRCGYC | 1 cut(s) | 418 |
| BsaJI | CCNNGG | 3 cut(s) | 147, 195, 196 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 256, 337 |
| Bse1I | ACTGG | 2 cut(s) | 250, 434 |
| BseBI | CCWGG | 2 cut(s) | 197, 438 |
| BseDI | CCNNGG | 3 cut(s) | 147, 195, 196 |
| BseGI | GGATG | 4 cut(s) | 140, 166, 210, 241 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 256, 337 |
| BseMII | CTCAG | 1 cut(s) | 252 |
| BseNI | ACTGG | 2 cut(s) | 250, 434 |
| BseXI | GCAGC | 1 cut(s) | 61 |
| BshFI | GGCC | 5 cut(s) | 240, 249, 288, 330, 433 |
| BslFI | GGGAC | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 256, 337 |
| BsmFI | GGGAC | 1 cut(s) | 197 |
| BsnI | GGCC | 5 cut(s) | 240, 249, 288, 330, 433 |
| Bsp143I | GATC | 1 cut(s) | 120 |
| BspACI | CCGC | 3 cut(s) | 48, 84, 289 |
| BspANI | GGCC | 5 cut(s) | 240, 249, 288, 330, 433 |
| BspCNI | CTCAG | 1 cut(s) | 253 |
| BspLI | GGNNCC | 1 cut(s) | 201 |
| BspMI | ACCTGC | 1 cut(s) | 49 |
| BsrI | ACTGG | 2 cut(s) | 250, 434 |
| BssECI | CCNNGG | 3 cut(s) | 147, 195, 196 |
| BssMI | GATC | 1 cut(s) | 120 |
| BssNI | GRCGYC | 1 cut(s) | 418 |
| Bst2UI | CCWGG | 2 cut(s) | 197, 438 |
| Bst4CI | ACNGT | 2 cut(s) | 11, 148 |
| BstACI | GRCGYC | 1 cut(s) | 418 |
| BstDEI | CTNAG | 3 cut(s) | 172, 255, 261 |
| BstDSI | CCRYGG | 1 cut(s) | 147 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 254, 335 |
| BstF5I | GGATG | 4 cut(s) | 140, 166, 210, 241 |
| BstKTI | GATC | 1 cut(s) | 123 |
| BstMBI | GATC | 1 cut(s) | 120 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 80, 83, 246 |
| BstNI | CCWGG | 2 cut(s) | 197, 438 |
| BstSCI | CCNGG | 2 cut(s) | 195, 436 |
| BstV1I | GCAGC | 1 cut(s) | 61 |
| BsuRI | GGCC | 5 cut(s) | 240, 249, 288, 330, 433 |
| BtgI | CCRYGG | 1 cut(s) | 147 |
| BtsCI | GGATG | 4 cut(s) | 140, 166, 210, 241 |
| BtsI | GCAGTG | 1 cut(s) | 300 |
| BtsIMutI | CAGTG | 1 cut(s) | 300 |
| BveI | ACCTGC | 1 cut(s) | 49 |
| Cfr13I | GGNCC | 3 cut(s) | 200, 286, 365 |
| CseI | GACGC | 1 cut(s) | 426 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 94, 129 |
| CviAII | CATG | 2 cut(s) | 55, 398 |
| DdeI | CTNAG | 3 cut(s) | 172, 255, 261 |
| DpnI | GATC | 1 cut(s) | 122 |
| DpnII | GATC | 1 cut(s) | 120 |
| EciI | GGCGGA | 1 cut(s) | 37 |
| Eco147I | AGGCCT | 1 cut(s) | 330 |
| Eco47I | GGWCC | 2 cut(s) | 200, 365 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 254, 335 |
| EcoO109I | RGGNCCY | 1 cut(s) | 200 |
| EcoRII | CCWGG | 2 cut(s) | 195, 436 |
| FaeI | CATG | 2 cut(s) | 58, 401 |
| FaiI | YATR | 4 cut(s) | 56, 110, 188, 399 |
| FaqI | GGGAC | 1 cut(s) | 197 |
| FatI | CATG | 2 cut(s) | 54, 397 |
| Fnu4HI | GCNGC | 3 cut(s) | 75, 84, 289 |
| FokI | GGATG | 4 cut(s) | 127, 173, 197, 248 |
| Fsp4HI | GCNGC | 3 cut(s) | 75, 84, 289 |
| FspBI | CTAG | 1 cut(s) | 332 |
| GluI | GCNGC | 3 cut(s) | 75, 84, 289 |
| HaeIII | GGCC | 5 cut(s) | 240, 249, 288, 330, 433 |
| HgaI | GACGC | 1 cut(s) | 426 |
| Hin1I | GRCGYC | 1 cut(s) | 418 |
| Hin1II | CATG | 2 cut(s) | 58, 401 |
| HindIII | AAGCTT | 1 cut(s) | 308 |
| HinfI | GANTC | 3 cut(s) | 19, 98, 136 |
| HphI | GGTGA | 1 cut(s) | 30 |
| Hpy166II | GTNNAC | 1 cut(s) | 208 |
| Hpy188I | TCNGA | 3 cut(s) | 64, 97, 347 |
| Hpy8I | GTNNAC | 1 cut(s) | 208 |
| HpyAV | CCTTC | 3 cut(s) | 102, 302, 320 |
| HpyCH4III | ACNGT | 2 cut(s) | 11, 148 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 80, 83, 246 |
| HpyF3I | CTNAG | 3 cut(s) | 172, 255, 261 |
| Hsp92I | GRCGYC | 1 cut(s) | 418 |
| Hsp92II | CATG | 2 cut(s) | 58, 401 |
| Kzo9I | GATC | 1 cut(s) | 120 |
| LpnPI | CCDG | 7 cut(s) | 54, 182, 209, 216, 231, 415, 423 |
| Lsp1109I | GCAGC | 1 cut(s) | 61 |
| MaeI | CTAG | 1 cut(s) | 332 |
| MalI | GATC | 1 cut(s) | 122 |
| MboI | GATC | 1 cut(s) | 120 |
| MluCI | AATT | 1 cut(s) | 348 |
| MseI | TTAA | 1 cut(s) | 442 |
| MslI | CAYNNNNRTG | 1 cut(s) | 396 |
| MspR9I | CCNGG | 2 cut(s) | 197, 438 |
| MvaI | CCWGG | 2 cut(s) | 197, 438 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 80, 83, 246 |
| NdeII | GATC | 1 cut(s) | 120 |
| NlaIII | CATG | 2 cut(s) | 58, 401 |
| NlaIV | GGNNCC | 1 cut(s) | 201 |
| PaqCI | CACCTGC | 1 cut(s) | 49 |
| PasI | CCCWGGG | 1 cut(s) | 196 |
| PceI | AGGCCT | 1 cut(s) | 330 |
| PfeI | GAWTC | 3 cut(s) | 19, 98, 136 |
| PflFI | GACNNNGTC | 1 cut(s) | 167 |
| PkrI | GCNGC | 3 cut(s) | 76, 85, 290 |
| PpuMI | RGGWCCY | 1 cut(s) | 200 |
| Psp5II | RGGWCCY | 1 cut(s) | 200 |
| Psp6I | CCWGG | 2 cut(s) | 195, 436 |
| PspGI | CCWGG | 2 cut(s) | 195, 436 |
| PspN4I | GGNNCC | 1 cut(s) | 201 |
| PspPI | GGNCC | 3 cut(s) | 200, 286, 365 |
| PspPPI | RGGWCCY | 1 cut(s) | 200 |
| PsyI | GACNNNGTC | 1 cut(s) | 167 |
| RseI | CAYNNNNRTG | 1 cut(s) | 396 |
| SaqAI | TTAA | 1 cut(s) | 442 |
| SatI | GCNGC | 3 cut(s) | 75, 84, 289 |
| Sau3AI | GATC | 1 cut(s) | 120 |
| Sau96I | GGNCC | 3 cut(s) | 200, 286, 365 |
| ScrFI | CCNGG | 2 cut(s) | 197, 438 |
| SetI | ASST | 5 cut(s) | 43, 76, 171, 178, 312 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 246 |
| SinI | GGWCC | 2 cut(s) | 200, 365 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 396 |
| SmlI | CTYRAG | 1 cut(s) | 369 |
| SmoI | CTYRAG | 1 cut(s) | 369 |
| Sse9I | AATT | 1 cut(s) | 348 |
| SseBI | AGGCCT | 1 cut(s) | 330 |
| SsiI | CCGC | 3 cut(s) | 48, 84, 289 |
| SspMI | CTAG | 1 cut(s) | 332 |
| StuI | AGGCCT | 1 cut(s) | 330 |
| StyD4I | CCNGG | 2 cut(s) | 195, 436 |
| TaaI | ACNGT | 2 cut(s) | 11, 148 |
| TaqI | TCGA | 2 cut(s) | 17, 276 |
| TasI | AATT | 1 cut(s) | 348 |
| TauI | GCSGC | 2 cut(s) | 86, 291 |
| TfiI | GAWTC | 3 cut(s) | 19, 98, 136 |
| Tru1I | TTAA | 1 cut(s) | 442 |
| Tru9I | TTAA | 1 cut(s) | 442 |
| TscAI | CASTG | 1 cut(s) | 307 |
| TseI | GCWGC | 1 cut(s) | 74 |
| TspDTI | ATGAA | 3 cut(s) | 386, 392, 440 |
| TspRI | CASTG | 1 cut(s) | 307 |
| Tth111I | GACNNNGTC | 1 cut(s) | 167 |
| VpaK11BI | GGWCC | 2 cut(s) | 200, 365 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 254, 335 |
| XspI | CTAG | 1 cut(s) | 332 |