Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014265

Physical Location & Seq

Genomic Coordinates Forward (+)

22343636 .. 22347056

Gene Structure 3421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCCGAGATAAAAAAAAAAGGGCATGAGATGGAAAAGGAAGAGAAAATTAGGGGAAGCGACGCTATAAGCAGCCGACTCGGAGTTATAAGCTCTCATTTGATCACTCAAGTCCCCGTCACTATGGCCGAGAAGGAGGCTGCTCTTGCTGCCGTACCCTCTGATTCTGCCACCATATTTGACAAGATCATCAACAAGGAAATACCGGCTACTGTGGTATTTGAGGACGATAAGGTCCTTGCATTTAGGGACATTAGTCCCCAGGCTCCAACACACATTTTGATCATTCCCAAAGTTAGAGATGGCTTAACTGGATTATCGAAGGCTGAAGAGAGACACTGTGAGATTCTTGGTCAGCTTCTCTACACTGCCAAGCTTGTTGCTAAACAGGAAGGCCTGGAGGATGGGTTCAGGATTGTGATCAATGATGGGCCAAAAGGATGTCAATCGGTCTATCACATTCATGTCCACCTCATTGGAGGAAGGCAAATGAACTGGCCCCCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016020 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

170

Amino Acids

18.54

Weight (kDa)

6.38

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	58 - 160	2e-19	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	65 - 163	3.2e-28	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56490
fragaria_vesca	FvH4_1g29350
malus_domestica	MD14G1092000.v1.1
prunus_persica	Prupe.7G023000_v2.0.a1
pyrus_communis	pycom12g09270 pycom14g08980
rosa_chinensis	RchiOBHm_Chr3g0494981
rosa_laevigata	RLG00000022657
rosa_multiflora	Rmu_sc0003482.1_g000010 Rmu_sc0006474.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390860
rosa_rugosa	Rorug03G0269000
rosa_samantha	Rh3AG318200 Rh3BG353000 Rh3CG350000 Rh3DG352300
rosa_wichuraiana	Rw3G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AasI	GACNNNNNNGTC	1 cut(s)	233
AcoI	YGGCCR	2 cut(s)	3, 126
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	156
AjnI	CCWGG	3 cut(s)	261, 396, 502
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	3 cut(s)	93, 358, 376
AluI	AGCT	3 cut(s)	93, 358, 376
Alw26I	GTCTC	1 cut(s)	328
AoxI	GGCC	5 cut(s)	3, 126, 394, 431, 497
ApeKI	GCWGC	3 cut(s)	72, 140, 149
AspS9I	GGNCC	3 cut(s)	235, 431, 498
AvaII	GGWCC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	84, 127, 136
BccI	CCATC	4 cut(s)	25, 296, 398, 422
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	3 cut(s)	263, 398, 504
BclI	TGATCA	3 cut(s)	102, 282, 420
BcoDI	GTCTC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	73, 141, 150
BlsI	GCNGC	3 cut(s)	74, 142, 151
Bme1390I	CCNGG	3 cut(s)	263, 398, 504
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	3 cut(s)	235, 431, 498
BmiI	GGNNCC	2 cut(s)	267, 500
BmrFI	CCNGG	3 cut(s)	263, 398, 504
BoxI	GACNNNNGTC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	93
BsaBI	GATNNNNATC	2 cut(s)	419, 445
BsaJI	CCNNGG	2 cut(s)	261, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	316, 500
Bse8I	GATNNNNATC	2 cut(s)	419, 445
BseBI	CCWGG	3 cut(s)	263, 398, 504
BseDI	CCNNGG	2 cut(s)	261, 502
BseGI	GGATG	2 cut(s)	409, 446
BseJI	GATNNNNATC	2 cut(s)	419, 445
BseNI	ACTGG	2 cut(s)	316, 500
BseXI	GCAGC	3 cut(s)	84, 127, 136
BshFI	GGCC	5 cut(s)	5, 128, 396, 433, 499
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	3 cut(s)	98, 243, 263
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	3 cut(s)	98, 243, 263
BsnI	GGCC	5 cut(s)	5, 128, 396, 433, 499
Bsp143I	GATC	4 cut(s)	102, 186, 282, 420
BspANI	GGCC	5 cut(s)	5, 128, 396, 433, 499
BspLI	GGNNCC	2 cut(s)	267, 500
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	316, 500
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	261, 502
BssMI	GATC	4 cut(s)	102, 186, 282, 420
Bst2UI	CCWGG	3 cut(s)	263, 398, 504
Bst4CI	ACNGT	2 cut(s)	214, 341
Bst6I	CTCTTC	2 cut(s)	36, 324
BstF5I	GGATG	2 cut(s)	409, 446
BstKTI	GATC	4 cut(s)	105, 189, 285, 423
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	4 cut(s)	102, 186, 282, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 149
BstNI	CCWGG	3 cut(s)	263, 398, 504
BstPAI	GACNNNNGTC	1 cut(s)	255
BstSCI	CCNGG	3 cut(s)	261, 396, 502
BstV1I	GCAGC	3 cut(s)	84, 127, 136
BstXI	CCANNNNNNTGG	1 cut(s)	476
BsuRI	GGCC	5 cut(s)	5, 128, 396, 433, 499
BtsCI	GGATG	2 cut(s)	409, 446
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	337, 366
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	235, 431, 498
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	155
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	2 cut(s)	26, 464
CviQI	GTAC	1 cut(s)	155
DpnI	GATC	4 cut(s)	104, 188, 284, 422
DpnII	GATC	4 cut(s)	102, 186, 282, 420
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	2 cut(s)	3, 126
Eam1104I	CTCTTC	2 cut(s)	36, 324
EarI	CTCTTC	2 cut(s)	36, 324
Eco147I	AGGCCT	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	261, 396, 502
FaeI	CATG	2 cut(s)	29, 467
FaiI	YATR	6 cut(s)	27, 68, 89, 125, 176, 465
FaqI	GGGAC	3 cut(s)	98, 243, 263
FatI	CATG	2 cut(s)	25, 463
FbaI	TGATCA	3 cut(s)	102, 282, 420
Fnu4HI	GCNGC	3 cut(s)	73, 141, 150
FokI	GGATG	2 cut(s)	416, 453
Fsp4HI	GCNGC	3 cut(s)	73, 141, 150
GluI	GCNGC	3 cut(s)	73, 141, 150
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	5 cut(s)	5, 128, 396, 433, 499
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	29, 467
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	3 cut(s)	78, 164, 346
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	2 cut(s)	83, 163
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	469
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	127, 316, 386, 477
HpyCH4III	ACNGT	2 cut(s)	214, 341
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 149
Hsp92II	CATG	2 cut(s)	29, 467
Ksp22I	TGATCA	3 cut(s)	102, 282, 420
Kzo9I	GATC	4 cut(s)	102, 186, 282, 420
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	3 cut(s)	84, 127, 136
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	4 cut(s)	104, 188, 284, 422
MboI	GATC	4 cut(s)	102, 186, 282, 420
MboII	GAAGA	2 cut(s)	53, 341
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	130, 169, 217, 394, 473, 482
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	263, 398, 504
MvaI	CCWGG	3 cut(s)	263, 398, 504
MwoI	GCNNNNNNNGC	2 cut(s)	146, 149
NdeII	GATC	4 cut(s)	102, 186, 282, 420
NlaIII	CATG	2 cut(s)	29, 467
NlaIV	GGNNCC	2 cut(s)	267, 500
NmeAIII	GCCGAG	2 cut(s)	31, 154
NmuCI	GTSAC	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	164, 346
PkrI	GCNGC	3 cut(s)	74, 142, 151
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PpuMI	RGGWCCY	1 cut(s)	235
PshAI	GACNNNNGTC	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	3 cut(s)	261, 396, 502
PspGI	CCWGG	3 cut(s)	261, 396, 502
PspN4I	GGNNCC	2 cut(s)	267, 500
PspPI	GGNCC	3 cut(s)	235, 431, 498
PspPPI	RGGWCCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	3 cut(s)	73, 141, 150
Sau3AI	GATC	4 cut(s)	102, 186, 282, 420
Sau96I	GGNCC	3 cut(s)	235, 431, 498
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	3 cut(s)	263, 398, 504
SetI	ASST	5 cut(s)	95, 237, 360, 378, 474
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	261, 396, 502
TaaI	ACNGT	2 cut(s)	214, 341
TaqI	TCGA	1 cut(s)	320
TaqII	GACCGA	1 cut(s)	439
TasI	AATT	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	164, 346
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	2 cut(s)	344, 373
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	3 cut(s)	72, 140, 149
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	452, 506
TspRI	CASTG	2 cut(s)	344, 373
VpaK11BI	GGWCC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.