Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0014265

Physical Location & Seq

Genomic Coordinates Forward (+)

26443073 .. 26444826

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0269000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGATGATACTTGATGGTTGCTTTCTACTGGAACTATTTAAGAAGTTCTTCTGTGAGGGATATAAGCGTTGCCGTAAGGAAAATTTTGTTCCAGCTGAAGTACTACATATTGAGAATGATCCTATATTCAACATGGATTGCATGCTTCAATACCTCTGCCATGACCTTATGCTGCTAGAAAATCAGCTGCCTTGGTTTGTTCTTGAGATTTTATATCGTCTGACTGTCGAAGAACACATCTACTATCCATCACTTAGCACAATGGTGCTCCTCACCTTTAGCTCACAAGGATCACTACTGCACAATGTCGAGTCCTATCTTAGTCACAATTGTCATGATGATGGTGATGATGAGGATGAGGATGAGGATGATGCTATCTTGCACATACTTGATCTGATAAGAAGTACAGTAGTTTTTCGATTTAGAAAGGTGAAGTCTTTGCCCTGCTTATTATCACAAGTAAAGTTGCCTCCAGCCACTACTCTCTCGGAGGTAGGTGTTGAATTCAGAAGGGATTGTATGGAAGGCATGATGAACATAGATTTCAAAGACGGCGTGTTTACAATTCCACAACTGCCAATTGCAGAGATGACAGAGCCACTGTTGAGGAACATAATTGCCCTTGAGCAATGTTGTCATGGCCGATCACATAAAATAACTTCCTATGTTATTTTGATGCATAGCCTCATTGCTTCCAGCAAGGATATAGATTTTCTTTGTGAGAAAGAAATATTCCTCAACTGGTTCAGCTCTGAAAATGCTTACAAGATCTTCAACAAGCTTTACGATGATACGTTCCTCAAGCACTTCTACTATGGGGAACTATGTGCTGAAGTGAACAAGTATTACAACGTTTCGTGGAACAGGTGGCTAGAAAAATTGAAACGTGATCACTTATCTAACCCATGGAAGATTACTTCTTTGGTTGCAGCCTTTATTCTTCTGGCTCTCACCTTATTGCAGACCACATATACCATTCAGCAATACTATTCTCCTCGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016020 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

334

Amino Acids

39.3

Weight (kDa)

5.23

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	1 - 317	1.3e-76	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56490
fragaria_vesca	FvH4_1g29350
malus_domestica	MD14G1092000.v1.1
prunus_persica	Prupe.7G023000_v2.0.a1
pyrus_communis	pycom12g09270 pycom14g08980
rosa_chinensis	RchiOBHm_Chr3g0494981
rosa_laevigata	RLG00000022657
rosa_multiflora	Rmu_sc0003482.1_g000010 Rmu_sc0006474.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390860
rosa_rugosa	Rorug03G0269000
rosa_samantha	Rh3AG318200 Rh3BG353000 Rh3CG350000 Rh3DG352300
rosa_wichuraiana	Rw3G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	852
AclWI	GGATC	2 cut(s)	113, 298
AcoI	YGGCCR	1 cut(s)	640
AcsI	RAATTY	2 cut(s)	82, 503
AcuI	CTGAAG	2 cut(s)	117, 852
AfaI	GTAC	2 cut(s)	102, 406
AgsI	TTSAA	6 cut(s)	130, 149, 503, 547, 775, 883
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	5 cut(s)	95, 187, 282, 750, 781
AluI	AGCT	5 cut(s)	95, 187, 282, 750, 781
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	113, 298
AoxI	GGCC	1 cut(s)	640
ApeKI	GCWGC	3 cut(s)	172, 187, 929
ApoI	RAATTY	2 cut(s)	82, 503
Asp700I	GAANNNNTTC	1 cut(s)	47
AsuHPI	GGTGA	4 cut(s)	265, 356, 442, 943
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	159, 174, 941
BccI	CCATC	3 cut(s)	8, 256, 335
BceAI	ACGGC	2 cut(s)	57, 568
BclI	TGATCA	1 cut(s)	889
BfaI	CTAG	2 cut(s)	176, 872
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	3 cut(s)	173, 188, 930
BlsI	GCNGC	3 cut(s)	174, 189, 931
BmcAI	AGTACT	1 cut(s)	102
BmsI	GCATC	2 cut(s)	361, 666
BpmI	CTGGAG	1 cut(s)	456
BpuEI	CTTGAG	3 cut(s)	224, 644, 785
BsaJI	CCNNGG	2 cut(s)	191, 905
Bse1I	ACTGG	2 cut(s)	33, 746
Bse3DI	GCAATG	2 cut(s)	635, 687
BseDI	CCNNGG	2 cut(s)	191, 905
BseGI	GGATG	3 cut(s)	361, 367, 373
BseMI	GCAATG	2 cut(s)	635, 687
BseNI	ACTGG	2 cut(s)	33, 746
BseRI	GAGGAG	2 cut(s)	260, 984
BseXI	GCAGC	3 cut(s)	159, 174, 941
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	118, 290, 391, 644, 768, 889
Bsp19I	CCATGG	1 cut(s)	905
BspANI	GGCC	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	334
BspPI	GGATC	2 cut(s)	113, 298
BsrDI	GCAATG	2 cut(s)	635, 687
BsrI	ACTGG	2 cut(s)	33, 746
BssECI	CCNNGG	2 cut(s)	191, 905
BssMI	GATC	6 cut(s)	118, 290, 391, 644, 768, 889
BssT1I	CCWWGG	2 cut(s)	191, 905
Bst4CI	ACNGT	3 cut(s)	226, 409, 603
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	254, 320
BstDSI	CCRYGG	1 cut(s)	905
BstF5I	GGATG	3 cut(s)	361, 367, 373
BstKTI	GATC	6 cut(s)	121, 293, 394, 647, 771, 892
BstMBI	GATC	6 cut(s)	118, 290, 391, 644, 768, 889
BstNSI	RCATGY	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	159, 174, 941
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
BsuRI	GGCC	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	905
BtsCI	GGATG	3 cut(s)	361, 367, 373
BtsIMutI	CAGTG	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	101, 405
CviAII	CATG	7 cut(s)	133, 142, 161, 335, 529, 638, 906
CviQI	GTAC	2 cut(s)	101, 405
DdeI	CTNAG	2 cut(s)	254, 320
DpnI	GATC	6 cut(s)	120, 292, 393, 646, 770, 891
DpnII	GATC	6 cut(s)	118, 290, 391, 644, 768, 889
EaeI	YGGCCR	1 cut(s)	640
Eco130I	CCWWGG	2 cut(s)	191, 905
Eco57I	CTGAAG	2 cut(s)	117, 852
EcoRI	GAATTC	1 cut(s)	503
EcoT14I	CCWWGG	2 cut(s)	191, 905
EcoT22I	ATGCAT	1 cut(s)	681
ErhI	CCWWGG	2 cut(s)	191, 905
FaeI	CATG	7 cut(s)	136, 145, 164, 338, 532, 641, 909
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	7 cut(s)	132, 141, 160, 334, 528, 637, 905
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	3 cut(s)	173, 188, 930
FokI	GGATG	3 cut(s)	368, 374, 380
Fsp4HI	GCNGC	3 cut(s)	173, 188, 930
FspBI	CTAG	2 cut(s)	176, 872
GluI	GCNGC	3 cut(s)	173, 188, 930
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	642
Hin1II	CATG	7 cut(s)	136, 145, 164, 338, 532, 641, 909
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	1 cut(s)	311
HphI	GGTGA	4 cut(s)	265, 356, 442, 943
Hpy166II	GTNNAC	2 cut(s)	561, 838
Hpy188I	TCNGA	5 cut(s)	222, 396, 490, 509, 754
Hpy188III	TCNNGA	2 cut(s)	203, 335
Hpy8I	GTNNAC	2 cut(s)	561, 838
HpyAV	CCTTC	2 cut(s)	504, 518
HpyCH4III	ACNGT	3 cut(s)	226, 409, 603
HpyCH4IV	ACGT	3 cut(s)	794, 852, 886
HpyCH4V	TGCA	7 cut(s)	141, 301, 382, 584, 679, 929, 961
HpyF3I	CTNAG	2 cut(s)	254, 320
HpySE526I	ACGT	3 cut(s)	794, 852, 886
Hsp92II	CATG	7 cut(s)	136, 145, 164, 338, 532, 641, 909
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	6 cut(s)	118, 290, 391, 644, 768, 889
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	8 cut(s)	14, 105, 457, 486, 709, 727, 850, 929
Lsp1109I	GCAGC	3 cut(s)	159, 174, 941
LweI	GCATC	2 cut(s)	361, 666
MaeI	CTAG	2 cut(s)	176, 872
MaeII	ACGT	3 cut(s)	794, 852, 886
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	6 cut(s)	120, 292, 393, 646, 770, 891
MboI	GATC	6 cut(s)	118, 290, 391, 644, 768, 889
MboII	GAAGA	5 cut(s)	40, 242, 763, 922, 932
MfeI	CAATTG	2 cut(s)	328, 579
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	7 cut(s)	82, 328, 503, 564, 579, 615, 878
MlyI	GAGTC	1 cut(s)	320
Mph1103I	ATGCAT	1 cut(s)	681
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	2 cut(s)	263, 339
MspA1I	CMGCKG	2 cut(s)	95, 187
MunI	CAATTG	2 cut(s)	328, 579
NcoI	CCATGG	1 cut(s)	905
NdeII	GATC	6 cut(s)	118, 290, 391, 644, 768, 889
NlaIII	CATG	7 cut(s)	136, 145, 164, 338, 532, 641, 909
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	681
NspI	RCATGY	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	174, 189, 931
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp1406I	AACGTT	1 cut(s)	852
PsrI	GAACNNNNNNTAC	2 cut(s)	830, 862
PsuI	RGATCY	1 cut(s)	768
PvuII	CAGCTG	2 cut(s)	95, 187
RsaI	GTAC	2 cut(s)	102, 406
RsaNI	GTAC	2 cut(s)	101, 405
RseI	CAYNNNNRTG	2 cut(s)	263, 339
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	173, 188, 930
Sau3AI	GATC	6 cut(s)	118, 290, 391, 644, 768, 889
ScaI	AGTACT	1 cut(s)	102
SchI	GAGTC	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	2 cut(s)	361, 666
SmiMI	CAYNNNNRTG	2 cut(s)	263, 339
SmlI	CTYRAG	3 cut(s)	203, 623, 800
SmoI	CTYRAG	3 cut(s)	203, 623, 800
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	7 cut(s)	82, 328, 503, 564, 579, 615, 878
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	2 cut(s)	176, 872
StyI	CCWWGG	2 cut(s)	191, 905
TaaI	ACNGT	3 cut(s)	226, 409, 603
TaiI	ACGT	3 cut(s)	797, 855, 889
TaqI	TCGA	3 cut(s)	228, 309, 418
TasI	AATT	7 cut(s)	82, 328, 503, 564, 579, 615, 878
TatI	WGTACW	2 cut(s)	100, 404
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	172, 187, 929
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	606
XapI	RAATTY	2 cut(s)	82, 503
XceI	RCATGY	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	176, 872
ZrmI	AGTACT	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.