Prupe.7G023000_v2.0.a1

14 kDa zinc-binding

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
3591694 .. 3596823
5130 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G023000.1

Sequence Viewer

Length: 477 bp
ATGGAAAAGCAAGTCAAAACTAATGATAAAAGCAGCAGGCTTGCAGTAATAAGCTCTCACTTGGTTACTCCTCAAATCCCCATGGCTGCTGCTTCTGAGAAGGAGGCTGCTCTTGCGGCCGTTCCCTCTGATTCACCCACCATATTTGACAAGATCATCAACAAGGAAATACCATCCAAGGTGGTTTTTGAGGACGATAAGGTCCTTGCTTTTAGGGACATTAATCCCCAAGCGCCGACACACATTTTGATCATTCCCAAAGTTAAAGATGGCTTAACTGGACTCTCTAAGGCAGAGGAGAGACACACTGAAATTCTTGGTCAGCTTCTCTACACTGCCAAGCTGATTGCCAAGCAGGAAGGTCTTGATGATGGCTTCAGGATTGTGATTAATGACGGGCCAAATGGATGCCAATCCGTTTATCACCTTCATGTTCATCTCCTTGGAGGACGTCAATTGAACTGGCCTCCAGGCTAA

Protein Analysis

159

Amino Acids

17.28

Weight (kDa)

6.59

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56490
fragaria_vesca FvH4_1g29350
malus_domestica MD14G1092000.v1.1
prunus_persica Prupe.7G023000_v2.0.a1
pyrus_communis pycom12g09270 pycom14g08980
rosa_chinensis RchiOBHm_Chr3g0494981
rosa_laevigata RLG00000022657
rosa_multiflora Rmu_sc0003482.1_g000010 Rmu_sc0006474.1_g000002
rosa_roxburghii Rroxscaffold_6G00390860
rosa_rugosa Rorug03G0269000
rosa_samantha Rh3AG318200 Rh3BG353000 Rh3CG350000 Rh3DG352300
rosa_wichuraiana Rw3G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AatII GACGTC 1 cut(s) 454
AciI CCGC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 451
AgsI TTSAA 1 cut(s) 460
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 3 cut(s) 54, 325, 343
AluI AGCT 3 cut(s) 54, 325, 343
Alw26I GTCTC 1 cut(s) 295
AoxI GGCC 3 cut(s) 117, 398, 464
ApeKI GCWGC 4 cut(s) 33, 86, 89, 107
ApoI RAATTY 1 cut(s) 312
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
AseI ATTAAT 2 cut(s) 222, 390
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 202, 398
AsuHPI GGTGA 2 cut(s) 126, 416
AvaII GGWCC 1 cut(s) 202
BbvI GCAGC 4 cut(s) 45, 73, 76, 94
BccI CCATC 3 cut(s) 181, 263, 365
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 295
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 5 cut(s) 34, 87, 90, 108, 117
BlsI GCNGC 5 cut(s) 35, 88, 91, 109, 118
Bme1390I CCNGG 1 cut(s) 471
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 202, 398
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 398
BpmI CTGGAG 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 451
BsaJI CCNNGG 3 cut(s) 81, 177, 442
Bse1I ACTGG 2 cut(s) 283, 467
Bse8I GATNNNNATC 1 cut(s) 412
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 3 cut(s) 81, 177, 442
BseGI GGATG 2 cut(s) 173, 413
BseJI GATNNNNATC 1 cut(s) 412
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 283, 467
BseRI GAGGAG 2 cut(s) 60, 311
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 4 cut(s) 45, 73, 76, 94
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 119, 400, 466
BsiEI CGRYCG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 3 cut(s) 119, 400, 466
Bsp143I GATC 2 cut(s) 153, 249
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 1 cut(s) 116
BspANI GGCC 3 cut(s) 119, 400, 466
BspCNI CTCAG 1 cut(s) 88
BsrI ACTGG 2 cut(s) 283, 467
BssECI CCNNGG 3 cut(s) 81, 177, 442
BssMI GATC 2 cut(s) 153, 249
BssNI GRCGYC 1 cut(s) 451
BssT1I CCWWGG 3 cut(s) 81, 177, 442
Bst2UI CCWGG 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 38, 42
BstDEI CTNAG 2 cut(s) 96, 288
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 173, 413
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 2 cut(s) 156, 252
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 2 cut(s) 153, 249
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 113, 116
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstV1I GCAGC 4 cut(s) 45, 73, 76, 94
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 3 cut(s) 119, 400, 466
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 173, 413
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 306, 333
Cac8I GCNNGC 2 cut(s) 38, 42
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 202, 398
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 2 cut(s) 82, 431
DdeI CTNAG 2 cut(s) 96, 288
DpnI GATC 2 cut(s) 155, 251
DpnII GATC 2 cut(s) 153, 249
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 3 cut(s) 81, 177, 442
Eco47I GGWCC 1 cut(s) 202
Eco52I CGGCCG 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 3 cut(s) 81, 177, 442
ErhI CCWWGG 3 cut(s) 81, 177, 442
FaeI CATG 2 cut(s) 85, 434
FaiI YATR 3 cut(s) 83, 143, 432
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 81, 430
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 34, 87, 90, 108, 117
FokI GGATG 2 cut(s) 160, 420
Fsp4HI GCNGC 5 cut(s) 34, 87, 90, 108, 117
GlaI GCGC 1 cut(s) 234
GluI GCNGC 5 cut(s) 34, 87, 90, 108, 117
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 3 cut(s) 119, 400, 466
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 451
Hin1II CATG 2 cut(s) 85, 434
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 2 cut(s) 131, 282
HphI GGTGA 2 cut(s) 126, 416
Hpy188I TCNGA 2 cut(s) 97, 130
Hpy188III TCNNGA 2 cut(s) 365, 379
HpyAV CCTTC 3 cut(s) 94, 353, 437
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 116
HpyF3I CTNAG 2 cut(s) 96, 288
HpySE526I ACGT 1 cut(s) 451
Hsp92I GRCGYC 1 cut(s) 451
Hsp92II CATG 2 cut(s) 85, 434
HspAI GCGC 1 cut(s) 233
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 2 cut(s) 153, 249
LpnPI CCDG 6 cut(s) 22, 264, 341, 364, 448, 456
Lsp1109I GCAGC 4 cut(s) 45, 73, 76, 94
LweI GCATC 1 cut(s) 398
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 155, 251
MboI GATC 2 cut(s) 153, 249
MfeI CAATTG 1 cut(s) 455
MluCI AATT 2 cut(s) 312, 455
MlyI GAGTC 1 cut(s) 276
MnlI CCTC 7 cut(s) 81, 97, 136, 184, 289, 440, 477
MseI TTAA 4 cut(s) 222, 264, 275, 390
MslI CAYNNNNRTG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 471
MunI CAATTG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 113, 116
NcoI CCATGG 1 cut(s) 81
NdeII GATC 2 cut(s) 153, 249
NlaIII CATG 2 cut(s) 85, 434
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 5 cut(s) 35, 88, 91, 109, 118
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PpuMI RGGWCCY 1 cut(s) 202
PshBI ATTAAT 2 cut(s) 222, 390
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspPI GGNCC 2 cut(s) 202, 398
PspPPI RGGWCCY 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 4 cut(s) 222, 264, 275, 390
SatI GCNGC 5 cut(s) 34, 87, 90, 108, 117
Sau3AI GATC 2 cut(s) 153, 249
Sau96I GGNCC 2 cut(s) 202, 398
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 471
SetI ASST 8 cut(s) 56, 183, 204, 327, 345, 364, 429, 454
SfaNI GCATC 1 cut(s) 398
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 2 cut(s) 312, 455
SsiI CCGC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 469
StyI CCWWGG 3 cut(s) 81, 177, 442
TaiI ACGT 1 cut(s) 454
TasI AATT 2 cut(s) 312, 455
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 4 cut(s) 222, 264, 275, 390
Tru9I TTAA 4 cut(s) 222, 264, 275, 390
TscAI CASTG 2 cut(s) 313, 340
TseI GCWGC 4 cut(s) 33, 86, 89, 107
TspDTI ATGAA 2 cut(s) 419, 425
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 2 cut(s) 313, 340
VpaK11BI GGWCC 1 cut(s) 202
VspI ATTAAT 2 cut(s) 222, 390
XapI RAATTY 1 cut(s) 312
ZraI GACGTC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.