Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014265

Physical Location & Seq

Genomic Coordinates Forward (+)

10382909 .. 10389339

Gene Structure 6431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g08980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAAAAGGGAGAGAAAAGTATCGAAGGTGCGAGGTCTGATAAAAGCAGCCGGCTTGCAGTAATAGGCTCTCACTTTGTAACTCCTCCGAACCCCATGGCTGAGAAGGATGCCGCTCTCGCCGCCGTTCCCTCCGATGCTCCCACCATATTTGACAAGATAATCAACAAGGAAATACCGGCTAAGGTGGTTTTTGAGGACGACAAGGTCCTTGCTTTTAGGGACATTAATCCCCAAGCTCCAACGCACATTTTGATCATTCCCAAAGTTAGAGATGGCTTAACTGGACTGTCTAAGGCGGAGGAGAGACACACTGAGATTCTTGGTCAGCTTCTGTACGCAGCCAAGCTGATTGCCAAGCAGGAGGGTCTTGATGATGGCTTCAGGATTGTGATCAACGATGGCCCAAACGGATGTCAATCGGTTTATCACCTTCACATCCATCTGCTTGGAGGACGGCAAATGAACTGGCCACCGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016020 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

161

Amino Acids

17.45

Weight (kDa)

6.29

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	49 - 151	6.3e-20	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	56 - 154	1.6e-28	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56490
fragaria_vesca	FvH4_1g29350
malus_domestica	MD14G1092000.v1.1
prunus_persica	Prupe.7G023000_v2.0.a1
pyrus_communis	pycom12g09270 pycom14g08980
rosa_chinensis	RchiOBHm_Chr3g0494981
rosa_laevigata	RLG00000022657
rosa_multiflora	Rmu_sc0003482.1_g000010 Rmu_sc0006474.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390860
rosa_rugosa	Rorug03G0269000
rosa_samantha	Rh3AG318200 Rh3BG353000 Rh3CG350000 Rh3DG352300
rosa_wichuraiana	Rw3G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	116
AciI	CCGC	3 cut(s)	114, 123, 299
AcoI	YGGCCR	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	367
AfaI	GTAC	1 cut(s)	338
AluBI	AGCT	3 cut(s)	239, 331, 349
AluI	AGCT	3 cut(s)	239, 331, 349
Alw26I	GTCTC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	2 cut(s)	403, 470
ApeKI	GCWGC	2 cut(s)	48, 341
AseI	ATTAAT	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	208, 404
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	60, 353
BccI	CCATC	4 cut(s)	269, 371, 395, 450
BceAI	ACGGC	2 cut(s)	110, 473
BclI	TGATCA	2 cut(s)	255, 393
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	301
BisI	GCNGC	4 cut(s)	49, 114, 123, 342
BlsI	GCNGC	4 cut(s)	50, 115, 124, 343
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	208, 404
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	100, 127
Bpu10I	CCTNAGC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	477
BsaBI	GATNNNNATC	2 cut(s)	392, 418
BsaJI	CCNNGG	1 cut(s)	96
Bse118I	RCCGGY	2 cut(s)	51, 178
Bse1I	ACTGG	2 cut(s)	289, 473
Bse8I	GATNNNNATC	2 cut(s)	392, 418
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	3 cut(s)	115, 419, 438
BseJI	GATNNNNATC	2 cut(s)	392, 418
BseMII	CTCAG	2 cut(s)	93, 306
BseNI	ACTGG	2 cut(s)	289, 473
BseRI	GAGGAG	2 cut(s)	75, 317
BseXI	GCAGC	2 cut(s)	60, 353
BshFI	GGCC	2 cut(s)	405, 472
BsiSI	CCGG	3 cut(s)	52, 179, 476
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	405, 472
Bsp143I	GATC	2 cut(s)	255, 393
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	3 cut(s)	114, 123, 299
BspANI	GGCC	2 cut(s)	405, 472
BspCNI	CTCAG	2 cut(s)	94, 307
BsrBI	CCGCTC	1 cut(s)	116
BsrFI	RCCGGY	2 cut(s)	51, 178
BsrI	ACTGG	2 cut(s)	289, 473
BssAI	RCCGGY	2 cut(s)	51, 178
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	255, 393
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	53, 57
BstDEI	CTNAG	4 cut(s)	102, 183, 294, 315
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	115, 419, 438
BstKTI	GATC	2 cut(s)	258, 396
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	255, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 122
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	60, 353
BstXI	CCANNNNNNTGG	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	405, 472
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	115, 419, 438
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	53, 57
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr10I	RCCGGY	2 cut(s)	51, 178
Cfr13I	GGNCC	2 cut(s)	208, 404
Csp6I	GTAC	1 cut(s)	337
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	1 cut(s)	97
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	4 cut(s)	102, 183, 294, 315
DpnI	GATC	2 cut(s)	257, 395
DpnII	GATC	2 cut(s)	255, 393
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	470
EciI	GGCGGA	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	100
FaiI	YATR	2 cut(s)	98, 149
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	255, 393
Fnu4HI	GCNGC	4 cut(s)	49, 114, 123, 342
FokI	GGATG	3 cut(s)	122, 425, 426
Fsp4HI	GCNGC	4 cut(s)	49, 114, 123, 342
GluI	GCNGC	4 cut(s)	49, 114, 123, 342
HaeIII	GGCC	2 cut(s)	405, 472
HapII	CCGG	3 cut(s)	52, 179, 476
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	3 cut(s)	52, 179, 476
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	40, 90, 136
Hpy188III	TCNNGA	2 cut(s)	371, 385
HpyAV	CCTTC	3 cut(s)	20, 100, 443
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 122
HpyF3I	CTNAG	4 cut(s)	102, 183, 294, 315
Hsp92II	CATG	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Ksp22I	TGATCA	2 cut(s)	255, 393
Kzo9I	GATC	2 cut(s)	255, 393
LmnI	GCTCC	2 cut(s)	145, 244
LpnPI	CCDG	6 cut(s)	65, 192, 270, 347, 370, 454
Lsp1109I	GCAGC	2 cut(s)	60, 353
LweI	GCATC	2 cut(s)	100, 127
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	257, 395
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	2 cut(s)	255, 393
MlsI	TGGCCA	1 cut(s)	472
MluNI	TGGCCA	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	7 cut(s)	27, 96, 142, 190, 295, 358, 446
Mox20I	TGGCCA	1 cut(s)	472
MroNI	GCCGGC	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	472
MseI	TTAA	2 cut(s)	228, 281
Msp20I	TGGCCA	1 cut(s)	472
MspI	CCGG	3 cut(s)	52, 179, 476
MspR9I	CCNGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	119, 122
NaeI	GCCGGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	477
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	255, 393
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	319
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	50, 115, 124, 343
PpuMI	RGGWCCY	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	208, 404
PspPPI	RGGWCCY	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	228, 281
SatI	GCNGC	4 cut(s)	49, 114, 123, 342
Sau3AI	GATC	2 cut(s)	255, 393
Sau96I	GGNCC	2 cut(s)	208, 404
ScrFI	CCNGG	1 cut(s)	477
SetI	ASST	8 cut(s)	31, 38, 189, 210, 241, 333, 351, 435
SfaNI	GCATC	2 cut(s)	100, 127
SinI	GGWCC	1 cut(s)	208
SsiI	CCGC	3 cut(s)	114, 123, 299
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	24
TauI	GCSGC	2 cut(s)	116, 125
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	228, 281
Tru9I	TTAA	2 cut(s)	228, 281
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	48, 341
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	319
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.