Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0014265

Physical Location & Seq

Genomic Coordinates Forward (+)

43938770 .. 43942484

Gene Structure 3715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAAAGGAAGAGAAAATTAGGGGAGGCGACGATATAAGCAGCCGACTCGCAGTTTTAAGCTCTCACTTGATCACTCCAAGCCCCAGCACTATGTCTGAGAAGGAGGCTGCTCTTGCTGCCGTACCCTCTGATTCCCCCACCATATTTGACAGGATCATCAACAAGGAAATACCGGCTAATGTGGTTTTTGAGGACGACAAGGTCCTTGCTTTTAGGGACATTAGTCCCCAGGCTCCAACACACATTTTGATCATTCCCAAAGTTAAAGATGGCTTAACTGGATTGTCGAAGGCTGAAGAGAGGCACTGTGAGATTCTTGGTCAGCTTCTCTACACTGCCAAGGTTGTTGCTAAACAGGAAGGCCTGGAGGATGGGTTCAGGATTGTGATTAATGATGGGCCAAAAGCATGTCAATCGGTCTATCACATTCATGTCCACCTCATTGGAGGAAGGCAAATGAACTGGCCCCCGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016020 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

159

Amino Acids

17.41

Weight (kDa)

5.85

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	48 - 150	7.6e-20	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	55 - 153	1.6e-28	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56490
fragaria_vesca	FvH4_1g29350
malus_domestica	MD14G1092000.v1.1
prunus_persica	Prupe.7G023000_v2.0.a1
pyrus_communis	pycom12g09270 pycom14g08980
rosa_chinensis	RchiOBHm_Chr3g0494981
rosa_laevigata	RLG00000022657
rosa_multiflora	Rmu_sc0003482.1_g000010 Rmu_sc0006474.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390860
rosa_rugosa	Rorug03G0269000
rosa_samantha	Rh3AG318200 Rh3BG353000 Rh3CG350000 Rh3DG352300
rosa_wichuraiana	Rw3G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	126
AjnI	CCWGG	2 cut(s)	231, 366
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	2 cut(s)	63, 328
AluI	AGCT	2 cut(s)	63, 328
AlwI	GGATC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	472
AoxI	GGCC	3 cut(s)	364, 401, 467
ApeKI	GCWGC	3 cut(s)	42, 110, 119
AseI	ATTAAT	1 cut(s)	393
AspS9I	GGNCC	3 cut(s)	205, 401, 468
AsuC2I	CCSGG	2 cut(s)	473, 474
AvaI	CYCGRG	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	54, 97, 106
BccI	CCATC	3 cut(s)	266, 368, 392
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 399, 433
BciT130I	CCWGG	2 cut(s)	233, 368
BclI	TGATCA	2 cut(s)	72, 252
BcnI	CCSGG	2 cut(s)	473, 474
BisI	GCNGC	3 cut(s)	43, 111, 120
BlsI	GCNGC	3 cut(s)	44, 112, 121
Bme1390I	CCNGG	4 cut(s)	233, 368, 473, 474
Bme18I	GGWCC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	472
BmgT120I	GGNCC	3 cut(s)	205, 401, 468
BmiI	GGNNCC	2 cut(s)	237, 470
BmrFI	CCNGG	4 cut(s)	233, 368, 473, 474
BoxI	GACNNNNGTC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	473, 474
BsaJI	CCNNGG	4 cut(s)	231, 342, 471, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	286, 470
BseBI	CCWGG	2 cut(s)	233, 368
BseDI	CCNNGG	4 cut(s)	231, 342, 471, 472
BseGI	GGATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	286, 470
BseXI	GCAGC	3 cut(s)	54, 97, 106
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	3 cut(s)	366, 403, 469
BsiHKCI	CYCGRG	1 cut(s)	472
BsiSI	CCGG	2 cut(s)	176, 473
BslFI	GGGAC	2 cut(s)	213, 233
BsmFI	GGGAC	2 cut(s)	213, 233
BsnI	GGCC	3 cut(s)	366, 403, 469
BsoBI	CYCGRG	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	72, 156, 252
BspANI	GGCC	3 cut(s)	366, 403, 469
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	237, 470
BspPI	GGATC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	286, 470
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	4 cut(s)	231, 342, 471, 472
BssMI	GATC	3 cut(s)	72, 156, 252
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	233, 368
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	2 cut(s)	6, 294
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	75, 159, 255
BstMBI	GATC	3 cut(s)	72, 156, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 119
BstNI	CCWGG	2 cut(s)	233, 368
BstNSI	RCATGY	1 cut(s)	414
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	4 cut(s)	231, 366, 471, 472
BstV1I	GCAGC	3 cut(s)	54, 97, 106
BstXI	CCANNNNNNTGG	1 cut(s)	446
BsuRI	GGCC	3 cut(s)	366, 403, 469
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	307, 336
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	205, 401, 468
Cfr9I	CCCGGG	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	2 cut(s)	411, 434
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	3 cut(s)	74, 158, 254
DpnII	GATC	3 cut(s)	72, 156, 252
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	2 cut(s)	6, 294
EarI	CTCTTC	2 cut(s)	6, 294
Eco130I	CCWWGG	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	231, 366
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	414, 437
FaiI	YATR	5 cut(s)	38, 95, 146, 412, 435
FaqI	GGGAC	2 cut(s)	213, 233
FatI	CATG	2 cut(s)	410, 433
FbaI	TGATCA	2 cut(s)	72, 252
Fnu4HI	GCNGC	3 cut(s)	43, 111, 120
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	3 cut(s)	43, 111, 120
GluI	GCNGC	3 cut(s)	43, 111, 120
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	3 cut(s)	366, 403, 469
HapII	CCGG	2 cut(s)	176, 473
Hin1II	CATG	2 cut(s)	414, 437
HinfI	GANTC	3 cut(s)	48, 134, 316
HpaII	CCGG	2 cut(s)	176, 473
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	100, 133
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	97, 286, 356, 447
HpyCH4III	ACNGT	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 119
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	414, 437
Ksp22I	TGATCA	2 cut(s)	72, 252
Kzo9I	GATC	3 cut(s)	72, 156, 252
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	3 cut(s)	54, 97, 106
MalI	GATC	3 cut(s)	74, 158, 254
MboI	GATC	3 cut(s)	72, 156, 252
MboII	GAAGA	2 cut(s)	23, 311
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	8 cut(s)	20, 100, 139, 187, 297, 364, 443, 452
MseI	TTAA	4 cut(s)	59, 267, 278, 393
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	2 cut(s)	176, 473
MspR9I	CCNGG	4 cut(s)	233, 368, 473, 474
MvaI	CCWGG	2 cut(s)	233, 368
MwoI	GCNNNNNNNGC	2 cut(s)	116, 119
NciI	CCSGG	2 cut(s)	473, 474
NdeII	GATC	3 cut(s)	72, 156, 252
NlaIII	CATG	2 cut(s)	414, 437
NlaIV	GGNNCC	2 cut(s)	237, 470
NspI	RCATGY	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	134, 316
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	44, 112, 121
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	231, 366
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	2 cut(s)	231, 366
PspN4I	GGNNCC	2 cut(s)	237, 470
PspPI	GGNCC	3 cut(s)	205, 401, 468
PspPPI	RGGWCCY	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	59, 267, 278, 393
SatI	GCNGC	3 cut(s)	43, 111, 120
Sau3AI	GATC	3 cut(s)	72, 156, 252
Sau96I	GGNCC	3 cut(s)	205, 401, 468
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	4 cut(s)	233, 368, 473, 474
SetI	ASST	5 cut(s)	65, 207, 330, 348, 444
SinI	GGWCC	1 cut(s)	205
SmaI	CCCGGG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	432
Sse9I	AATT	1 cut(s)	18
SseBI	AGGCCT	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	4 cut(s)	231, 366, 471, 472
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	290
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	134, 316
Tru1I	TTAA	4 cut(s)	59, 267, 278, 393
Tru9I	TTAA	4 cut(s)	59, 267, 278, 393
TscAI	CASTG	2 cut(s)	314, 343
TseI	GCWGC	3 cut(s)	42, 110, 119
TspDTI	ATGAA	2 cut(s)	422, 476
TspMI	CCCGGG	1 cut(s)	472
TspRI	CASTG	2 cut(s)	314, 343
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	205
VspI	ATTAAT	1 cut(s)	393
XceI	RCATGY	1 cut(s)	414
XmaI	CCCGGG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.