AT3G58170

Bet1-like SNARE 1-1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
21542359 .. 21544084
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58170.1

Sequence Viewer

Length: 369 bp
ATGAATCCTAGAAGGGAGCCTCGTGGTGGTAGAAGTTCTCTCTTTGATGGCATCGAAGAGGGAGGAATTAGAGCTGCTTCTTCTTACTCTCATGAGATCAATGAACATGAGAATGAGCGTGCCTTGGAGGGATTGCAAGATAGAGTCATTCTCTTAAAACGACTATCTGGCGATATAAATGAAGAGGTCGATACTCATAACCGCATGCTTGACAGAATGGGCAATGATATGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTTGTTGGTTTATTTCTAGTCATATACTATCTTACTCGGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

6.3

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 202, 268
AfiI CCNNNNNNNGG 1 cut(s) 26
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 265
AvaII GGWCC 1 cut(s) 265
BauI CACGAG 2 cut(s) 21, 317
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 9, 344
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 18, 259
BmsI GCATC 2 cut(s) 60, 332
BplI GAGNNNNNCTC 2 cut(s) 135, 167
BsaJI CCNNGG 2 cut(s) 123, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 123, 261
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 96
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 2 cut(s) 202, 268
BspCNI CTCAG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 18, 259
BsrDI GCAATG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 123, 261
BssMI GATC 1 cut(s) 96
BssSI CACGAG 2 cut(s) 21, 317
BssT1I CCWWGG 2 cut(s) 123, 261
Bst2BI CACGAG 2 cut(s) 21, 317
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 51, 177
BstC8I GCNNGC 2 cut(s) 120, 206
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 261
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 120, 206
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 265
CseI GACGC 1 cut(s) 322
CviAII CATG 4 cut(s) 92, 107, 205, 262
CviJI RGCY 3 cut(s) 19, 74, 300
CviKI_1 RGCY 3 cut(s) 19, 74, 300
DdeI CTNAG 1 cut(s) 253
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 51, 177
EarI CTCTTC 2 cut(s) 51, 177
Eco130I CCWWGG 2 cut(s) 123, 261
Eco47I GGWCC 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 123, 261
ErhI CCWWGG 2 cut(s) 123, 261
FaeI CATG 4 cut(s) 95, 110, 208, 265
FaiI YATR 9 cut(s) 93, 108, 176, 198, 206, 230, 263, 350, 352
FatI CATG 4 cut(s) 91, 106, 204, 261
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 9, 344
GluI GCNGC 1 cut(s) 75
HgaI GACGC 1 cut(s) 322
Hin1II CATG 4 cut(s) 95, 110, 208, 265
HinfI GANTC 3 cut(s) 4, 144, 233
Hpy188III TCNNGA 2 cut(s) 92, 255
HpyAV CCTTC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 4 cut(s) 95, 110, 208, 265
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 153, 240
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 60, 332
MaeI CTAG 2 cut(s) 9, 344
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 4 cut(s) 68, 72, 194, 315
MluCI AATT 1 cut(s) 66
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 5 cut(s) 30, 52, 56, 121, 178
MseI TTAA 2 cut(s) 155, 273
MslI CAYNNNNRTG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 312
NcoI CCATGG 1 cut(s) 261
NdeII GATC 1 cut(s) 96
NlaIII CATG 4 cut(s) 95, 110, 208, 265
NlaIV GGNNCC 2 cut(s) 18, 259
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PagI TCATGA 1 cut(s) 91
PctI GAATGC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 4, 233
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 18, 259
PspPI GGNCC 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 2 cut(s) 155, 273
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 153
SetI ASST 2 cut(s) 76, 189
SfaNI GCATC 2 cut(s) 60, 332
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 111
SphI GCATGC 1 cut(s) 208
Sse9I AATT 1 cut(s) 66
SsiI CCGC 2 cut(s) 202, 268
SspMI CTAG 2 cut(s) 9, 344
StyI CCWWGG 2 cut(s) 123, 261
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 54, 189
TasI AATT 1 cut(s) 66
TfiI GAWTC 2 cut(s) 4, 233
Tru1I TTAA 2 cut(s) 155, 273
Tru9I TTAA 2 cut(s) 155, 273
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 17, 117, 195, 225
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 265
XceI RCATGY 1 cut(s) 208
XspI CTAG 2 cut(s) 9, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.