FvH4_2g22020

Bet1-like SNARE

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
18166121 .. 18169074
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22020.t1

Sequence Viewer

Length: 369 bp
ATGAATGCTCGAAGGGACTACCGCAACAACAAAGTCGCTCTTTTTGATGGCATTGAGGAGGGTGGCATCAGGGCCTCAGCTTCCTATTCCCATGAAATTGATGAGCAAGATAATGAAAGGGCAGTGGATGGATTGCAAGATAGAGTCAATTTGCTGAAGAGATTGTCAGGTGACATACATGAAGAGGTGGAGAGTCATAATCATATGCTGGACCGGATGGGGAATGATATGGACTCATCAAGGGGAATGCTATCTGGTACAATGGACAGGTTTAAGACGGTTTTTGAGACCAAGTCAAGCCAGAGAATGTTTACACTGGTGGCATCATTTCTGGTCGTCTTTCTAGTTATATACTATCTCACCAGGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.07

Weight (kDa)

5.52

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 72, 211
AsuHPI GGTGA 2 cut(s) 182, 352
AvaII GGWCC 1 cut(s) 211
BbvCI CCTCAGC 1 cut(s) 76
BccI CCATC 3 cut(s) 41, 122, 211
BciT130I CCWGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 72, 211
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 75, 332
Bpu10I CCTNAGC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 364
BseGI GGATG 2 cut(s) 133, 222
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 2 cut(s) 10, 252
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 281
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 152, 177
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 133, 222
BstMAI GTCTC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 2 cut(s) 133, 222
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 314
Cfr13I GGNCC 2 cut(s) 72, 211
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 1 cut(s) 258
CviAII CATG 2 cut(s) 92, 179
CviJI RGCY 3 cut(s) 74, 80, 300
CviKI_1 RGCY 3 cut(s) 74, 80, 300
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 152, 177
EarI CTCTTC 2 cut(s) 152, 177
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 95, 182
FaiI YATR 9 cut(s) 93, 176, 180, 198, 204, 206, 230, 350, 352
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 91, 178
FauNDI CATATG 1 cut(s) 204
FokI GGATG 2 cut(s) 140, 229
FspBI CTAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 214
Hin1II CATG 2 cut(s) 95, 182
HinfI GANTC 3 cut(s) 144, 193, 233
HpaII CCGG 1 cut(s) 214
HphI GGTGA 2 cut(s) 182, 352
Hpy166II GTNNAC 1 cut(s) 312
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 2 cut(s) 95, 182
LweI GCATC 2 cut(s) 75, 332
MabI ACCWGGT 1 cut(s) 362
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 2 cut(s) 169, 194
MluCI AATT 2 cut(s) 96, 148
MlyI GAGTC 3 cut(s) 153, 202, 227
MnlI CCTC 4 cut(s) 49, 52, 85, 178
MseI TTAA 1 cut(s) 273
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 364
Mva1269I GAATGC 2 cut(s) 10, 252
MvaI CCWGG 1 cut(s) 364
NdeI CATATG 1 cut(s) 204
NlaIII CATG 2 cut(s) 95, 182
NmuCI GTSAC 1 cut(s) 170
PctI GAATGC 2 cut(s) 10, 252
PflFI GACNNNGTC 1 cut(s) 292
PleI GAGTC 3 cut(s) 152, 201, 227
PpsI GAGTC 3 cut(s) 152, 201, 227
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspPI GGNCC 2 cut(s) 72, 211
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 273
Sau96I GGNCC 2 cut(s) 72, 211
SchI GAGTC 3 cut(s) 153, 202, 227
ScrFI CCNGG 1 cut(s) 364
SetI ASST 5 cut(s) 82, 172, 189, 272, 368
SexAI ACCWGGT 1 cut(s) 362
SfaNI GCATC 2 cut(s) 75, 332
SinI GGWCC 1 cut(s) 211
Sse9I AATT 2 cut(s) 96, 148
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 96, 148
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 2 cut(s) 129, 321
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 4 cut(s) 17, 108, 129, 195
TspRI CASTG 2 cut(s) 129, 321
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 211
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.