MD10G1188000.v1.1

Bet1-like SNARE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012897
Physical Location & Seq
Forward (+)
28284903 .. 28287392
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1188000.v1.1.491

Sequence Viewer

Length: 369 bp
ATGAATGCTCGAAGGGACTTCCGCGGCAACAAAGTTGCTCTTTTTGATGGCATTGAGGAGGGTGGCATCAGGGCCTCAGCTTCCTACTCCCATGAAATTGATGAACATGATAATGAAAGGGCAGTGGACGGGTTGCAAGATAGAGTCAATTTGCTGAAGAGATTGTCAGGTGATATACATGAGGAGGTGGAGAGCCATAATCACATGTTGGACAGAATGGGAAATGATATGGATTCATCGAGGGGGGTGCTATCTGGTACAATGGACAAGTTTAAGATGGTTTTCGAGACCAAGTCAAGCAAGAGAATGTTTACACTAGTCGCATCGTTTGTGGTCGTATTCCTAGTCGTATATTATCTCACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.95

Weight (kDa)

5.93

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58170
fragaria_vesca FvH4_2g22020 FvH4_2g22020
malus_domestica MD05G1201200.v1.1 MD10G1188000.v1.1
prunus_persica Prupe.8G227800_v2.0.a1
pyrus_communis pycom05g18800 pycom10g16250
rosa_chinensis RchiOBHm_Chr6g0288881
rosa_multiflora Rmu_sc0005314.1_g000007
rosa_roxburghii Rroxscaffold_7G00179810
rosa_rugosa Rorug06G0199000 Rorug06G0199000
rosa_samantha Rh6AG310200 Rh6BG316100 Rh6CG323600 Rh6DG309300
rosa_wichuraiana Rw6G026830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 22, 24
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 204
AhlI ACTAGT 1 cut(s) 316
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 182, 352
BbvCI CCTCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 41, 271
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 281
BcuI ACTAGT 1 cut(s) 316
BfaI CTAG 2 cut(s) 317, 344
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 75, 332
Bpu10I CCTNAGC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 2 cut(s) 71, 197
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 281
BspACI CCGC 2 cut(s) 22, 24
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 89
BspFNI CGCG 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 76
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 362
BstUI CGCG 1 cut(s) 24
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 72
Cfr42I CCGCGG 1 cut(s) 25
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 1 cut(s) 258
CviAII CATG 4 cut(s) 92, 107, 179, 205
CviJI RGCY 3 cut(s) 74, 80, 195
CviKI_1 RGCY 3 cut(s) 74, 80, 195
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 362
FaeI CATG 4 cut(s) 95, 110, 182, 208
FaiI YATR 8 cut(s) 93, 108, 176, 180, 198, 206, 230, 352
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 29
FatI CATG 4 cut(s) 91, 106, 178, 204
Fnu4HI GCNGC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 2 cut(s) 317, 344
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 4 cut(s) 95, 110, 182, 208
HinfI GANTC 2 cut(s) 144, 233
HphI GGTGA 2 cut(s) 182, 352
Hpy166II GTNNAC 2 cut(s) 127, 312
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 127, 312
HpyAV CCTTC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 4 cut(s) 95, 110, 182, 208
KspI CCGCGG 1 cut(s) 25
LpnPI CCDG 4 cut(s) 55, 153, 240, 349
LweI GCATC 2 cut(s) 75, 332
MabI ACCWGGT 1 cut(s) 362
MaeI CTAG 2 cut(s) 317, 344
MboII GAAGA 1 cut(s) 169
MluCI AATT 2 cut(s) 96, 148
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 6 cut(s) 49, 52, 85, 175, 178, 234
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 24
NlaIII CATG 4 cut(s) 95, 110, 182, 208
NspI RCATGY 1 cut(s) 208
PciI ACATGT 1 cut(s) 204
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PscI ACATGT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspPI GGNCC 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 111
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 364
SetI ASST 4 cut(s) 82, 172, 189, 368
SexAI ACCWGGT 1 cut(s) 362
SfaNI GCATC 2 cut(s) 75, 332
Sfr303I CCGCGG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 111
SpeI ACTAGT 1 cut(s) 316
Sse9I AATT 2 cut(s) 96, 148
SsiI CCGC 2 cut(s) 22, 24
SspMI CTAG 2 cut(s) 317, 344
StyD4I CCNGG 1 cut(s) 362
TaqI TCGA 3 cut(s) 10, 239, 285
TasI AATT 2 cut(s) 96, 148
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 5 cut(s) 17, 108, 117, 129, 225
TspRI CASTG 1 cut(s) 129
Tth111I GACNNNGTC 1 cut(s) 292
XceI RCATGY 1 cut(s) 208
XspI CTAG 2 cut(s) 317, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.