Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Reverse (-)

32010928 .. 32014314

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0199000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAGCCCAATTTTTCCGGTTTCTGAAGATTGTGGGTGTGGGCTACAAAGCCAGAGCTGAAGCTCAGGGGCGGTTGCTGTATCTGAAATTGGGTTACAGTCATGAAGTTGAATTGACTGTGCCTCCTGCTGTTCGTGTCTTCTGCTTCAAGAACAATGTCGTTTGCTGTACTGGGATTGATAAGGAGAGGGTGCACCAGTTTGCTGCCGCCGTTCGTAGTTGTAAGCCGCCGGAAGTTTACAAAGGCAAGGGAATAATGTACATTGATGAGGTTATAAAGAAGAAGCAAGGAAAGAAGTCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

102

Amino Acids

11.58

Weight (kDa)

9.73

Isoelectric Point (pI)

15.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	13 - 88	6.2e-20	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AciI	CCGC	3 cut(s)	73, 210, 230
AcuI	CTGAAG	2 cut(s)	47, 81
AfaI	GTAC	2 cut(s)	172, 263
AgsI	TTSAA	2 cut(s)	113, 151
AluBI	AGCT	2 cut(s)	59, 65
AluI	AGCT	2 cut(s)	59, 65
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	197
BisI	GCNGC	3 cut(s)	207, 210, 230
BlsI	GCNGC	3 cut(s)	208, 211, 231
BmrI	ACTGGG	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bse1I	ACTGG	2 cut(s)	178, 199
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	178, 199
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	19, 233
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	261
BspACI	CCGC	3 cut(s)	73, 210, 230
BspCNI	CTCAG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	103
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	178, 199
Bst4CI	ACNGT	2 cut(s)	101, 121
BstAUI	TGTACA	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	66, 303
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	133
CciI	TCATGA	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	171, 262
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	6 cut(s)	8, 45, 53, 59, 65, 229
CviKI_1	RGCY	6 cut(s)	8, 45, 53, 59, 65, 229
CviQI	GTAC	2 cut(s)	171, 262
DdeI	CTNAG	2 cut(s)	66, 303
Eco57I	CTGAAG	2 cut(s)	47, 81
FaeI	CATG	1 cut(s)	107
FaiI	YATR	2 cut(s)	105, 278
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	207, 210, 230
Fsp4HI	GCNGC	3 cut(s)	207, 210, 230
GluI	GCNGC	3 cut(s)	207, 210, 230
HapII	CCGG	2 cut(s)	19, 233
Hin1II	CATG	1 cut(s)	107
HpaII	CCGG	2 cut(s)	19, 233
Hpy166II	GTNNAC	2 cut(s)	196, 241
Hpy188I	TCNGA	2 cut(s)	27, 87
Hpy188III	TCNNGA	2 cut(s)	104, 151
Hpy8I	GTNNAC	2 cut(s)	196, 241
HpyCH4III	ACNGT	2 cut(s)	101, 121
HpyCH4V	TGCA	1 cut(s)	196
HpyF3I	CTNAG	2 cut(s)	66, 303
Hsp92II	CATG	1 cut(s)	107
LpnPI	CCDG	7 cut(s)	32, 53, 67, 141, 159, 212, 246
Lsp1109I	GCAGC	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	95
MboII	GAAGA	3 cut(s)	40, 133, 295
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	11, 89, 113
MnlI	CCTC	3 cut(s)	135, 183, 265
MspI	CCGG	2 cut(s)	19, 233
NlaIII	CATG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	208, 211, 231
PsiI	TTATAA	1 cut(s)	278
RsaI	GTAC	2 cut(s)	172, 263
RsaNI	GTAC	2 cut(s)	171, 262
SatI	GCNGC	3 cut(s)	207, 210, 230
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	3 cut(s)	61, 67, 276
Sse9I	AATT	3 cut(s)	11, 89, 113
SsiI	CCGC	3 cut(s)	73, 210, 230
TaaI	ACNGT	2 cut(s)	101, 121
TasI	AATT	3 cut(s)	11, 89, 113
TatI	WGTACW	2 cut(s)	170, 261
TauI	GCSGC	2 cut(s)	212, 232
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.