Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Reverse (-)

20417143 .. 20418342

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G228000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGACTGTATCAACTTCAGCTTCGAAGGAGAAAATTTATGTGATATTTCGTGGGCTGCAAAAAATTATGCATGCAGCTTTTGCAAGAGAGAGTTCAGGTCTGCTCAAGCTCTTGGGGGTCATATGAATGTCCACAGGAGAGACAGAGCTAGGTTGAGACTCCTCCCTCCAAGCCTTTCTTCAGAAATATGTCCTCATAACCCTAACCCTAGCTCTTATTTTTCTCCCTCTTCATCATCATCATCATCCTCTCTTTCATCCTCTAAGGGCTTACCACACAATTACTCATCATGTCACTCCTTGCTTTCTCCTTCTTTGAGGGCTTTGATGTCTGCAACTTCATCTACAGATGGAAACAAGAAACCCAAATTCAAGTACAACTCTCCTCAAAATCATGTTCCTAATTTGATTCCCAAGAAAGGCAAGAGAGGTGCTGTGGATCATGAGGCCGGAGAAATATTGAAGGGGTTTGCACAAAAAGATCTGGATGATGAGTTCAACAAGGTTGATGATCTGAAGAAAGAGAGTAATATTATTAGGCTGGACTTGGACATGGGTTTCTTCAAAGATCACAAGGAGGAAGTGGATTTGGAACTTCGACTTGGGCATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

205

Amino Acids

22.76

Weight (kDa)

8.49

Isoelectric Point (pI)

62.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	34, 368
AcuI	CTGAAG	2 cut(s)	165, 536
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	4 cut(s)	373, 463, 499, 565
AjuI	GAANNNNNNNTTGG	3 cut(s)	163, 195, 585
AloI	GAACNNNNNNTCC	2 cut(s)	479, 511
AluBI	AGCT	5 cut(s)	21, 78, 110, 149, 213
AluI	AGCT	5 cut(s)	21, 78, 110, 149, 213
Alw26I	GTCTC	2 cut(s)	135, 151
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	2 cut(s)	56, 75
ApoI	RAATTY	2 cut(s)	34, 368
AsuII	TTCGAA	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	43, 87
BccI	CCATC	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	135, 151
BfaI	CTAG	2 cut(s)	150, 210
BfmI	CTRYAG	2 cut(s)	345, 611
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	2 cut(s)	57, 76
BlsI	GCNGC	2 cut(s)	58, 77
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
BseGI	GGATG	3 cut(s)	245, 257, 493
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	152, 375
BseXI	GCAGC	2 cut(s)	43, 87
BshFI	GGCC	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	2 cut(s)	135, 151
BsnI	GGCC	1 cut(s)	449
Bsp119I	TTCGAA	1 cut(s)	24
Bsp143I	GATC	4 cut(s)	439, 481, 511, 568
BspANI	GGCC	1 cut(s)	449
BspHI	TCATGA	1 cut(s)	442
BspPI	GGATC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	24
BssMI	GATC	4 cut(s)	439, 481, 511, 568
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	245, 257, 493
BstKTI	GATC	4 cut(s)	442, 484, 514, 571
BstMAI	GTCTC	2 cut(s)	135, 151
BstMBI	GATC	4 cut(s)	439, 481, 511, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	75
BstSFI	CTRYAG	2 cut(s)	345, 611
BstV1I	GCAGC	2 cut(s)	43, 87
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	449
BtsCI	GGATG	3 cut(s)	245, 257, 493
Cac8I	GCNNGC	1 cut(s)	73
CciI	TCATGA	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	5 cut(s)	72, 291, 395, 443, 553
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	4 cut(s)	441, 483, 513, 570
DpnII	GATC	4 cut(s)	439, 481, 511, 568
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	165, 536
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	5 cut(s)	75, 294, 398, 446, 556
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FatI	CATG	5 cut(s)	71, 290, 394, 442, 552
FauNDI	CATATG	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	57, 76
FokI	GGATG	3 cut(s)	232, 244, 500
Fsp4HI	GCNGC	2 cut(s)	57, 76
FspBI	CTAG	2 cut(s)	150, 210
GluI	GCNGC	2 cut(s)	57, 76
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	1 cut(s)	450
Hin1II	CATG	5 cut(s)	75, 294, 398, 446, 556
HinfI	GANTC	2 cut(s)	159, 409
HpaII	CCGG	1 cut(s)	450
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	184, 516
Hpy188III	TCNNGA	2 cut(s)	443, 485
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	20, 321, 457
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	6 cut(s)	59, 71, 75, 84, 335, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	75, 294, 398, 446, 556
Kzo9I	GATC	4 cut(s)	439, 481, 511, 568
LpnPI	CCDG	5 cut(s)	82, 121, 463, 470, 527
Lsp1109I	GCAGC	2 cut(s)	43, 87
MaeI	CTAG	2 cut(s)	150, 210
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	4 cut(s)	441, 483, 513, 570
MboI	GATC	4 cut(s)	439, 481, 511, 568
MboII	GAAGA	4 cut(s)	171, 222, 529, 553
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	5 cut(s)	34, 64, 280, 368, 403
MlyI	GAGTC	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	73
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	4 cut(s)	439, 481, 511, 568
NlaIII	CATG	5 cut(s)	75, 294, 398, 446, 556
NmuCI	GTSAC	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	75
PagI	TCATGA	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	58, 77
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	2 cut(s)	57, 76
Sau3AI	GATC	4 cut(s)	439, 481, 511, 568
SchI	GAGTC	1 cut(s)	153
SetI	ASST	9 cut(s)	23, 80, 101, 112, 151, 155, 215, 433, 507
SfcI	CTRYAG	2 cut(s)	345, 611
SfuI	TTCGAA	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	5 cut(s)	34, 64, 280, 368, 403
SspI	AATATT	2 cut(s)	459, 532
SspMI	CTAG	2 cut(s)	150, 210
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	24, 598
TasI	AATT	5 cut(s)	34, 64, 280, 368, 403
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	56, 75
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	140, 222, 246, 330
XapI	RAATTY	2 cut(s)	34, 368
XceI	RCATGY	1 cut(s)	75
XspI	CTAG	2 cut(s)	150, 210
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.