Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Reverse (-)

50923957 .. 50925318

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG310600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATTGTGTTAAGTTGAGGTTTGGAAGAGAAGAAGATTTAACCGATATTTCTCCATGGACTGCAAAGAACTTTACATGTAGCTTTTGCAAGAGAGAATTCAGGTCTGCTCAAGCTCTTGGGGGTCATATGAATGTCCATAGGAGAGATAGAGCTAGGCTGCGACTCCTACCACCTAACTCGATCCTTTCTTCTTCTGAATATTCTCCTTACCCTACTCCTACTCCTACTCCTAACCCTAACCCTAACCCTAAGTCTTACTTCTCTCCGTCGCCATCATCATCATCTCTTTCAGGAGCTAATAAGTACTTACCGCACTTGCTCTCTCCTCGGAGCACTTATGTGTCCACACCTTCCTCAGGTACTTCAGATCATAAAAACAAGAAACTGATGATATTCGACAGCGGCTCTCATCAACATCATGTTCCTGCTTTCCTTAATCCTAAGAAAAGGGTCAAGGGAGGCAGTGGTCTTGATTATGAGTTTGGAGATTTACTCAATGGTTTTGCTGGGAATGCACAAAAACATCATCTTAATGATGATTTCAAGGTTGTGAGGAAAGATGAGAAGCATATCAACATGATTAGGGTGGATTTGGACATGGGGTTGCTGATTAAAGATCCAAACAAGGAGGAACTGGATTTGGAACTTCGACTCGGGCATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

222

Amino Acids

24.96

Weight (kDa)

9.32

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	25 - 49	1e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	314, 405
AclWI	GGATC	2 cut(s)	178, 614
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	308, 364
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	547
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	4 cut(s)	84, 116, 155, 299
AluI	AGCT	4 cut(s)	84, 116, 155, 299
Alw21I	GWGCWC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	178, 614
Ama87I	CYCGRG	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	156, 667
BisI	GCNGC	2 cut(s)	161, 406
BlsI	GCNGC	2 cut(s)	162, 407
BmcAI	AGTACT	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	656
BplI	GAGNNNNNCTC	2 cut(s)	480, 512
BpuEI	CTTGAG	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	56, 329
BsaXI	ACNNNNNCTCC	4 cut(s)	208, 214, 238, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	642
Bse21I	CCTNAGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	56, 329
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	520
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	183, 370, 619
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	2 cut(s)	314, 405
BspCNI	CTCAG	1 cut(s)	371
BspPI	GGATC	2 cut(s)	178, 614
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	56, 329
BssMI	GATC	3 cut(s)	183, 370, 619
BssT1I	CCWWGG	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	252, 358, 444
BstDSI	CCRYGG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstKTI	GATC	3 cut(s)	186, 373, 622
BstMBI	GATC	3 cut(s)	183, 370, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	307, 363
CviAII	CATG	5 cut(s)	57, 78, 422, 580, 601
CviJI	RGCY	6 cut(s)	84, 116, 155, 160, 299, 408
CviKI_1	RGCY	6 cut(s)	84, 116, 155, 160, 299, 408
CviQI	GTAC	2 cut(s)	307, 363
DdeI	CTNAG	3 cut(s)	252, 358, 444
DpnI	GATC	3 cut(s)	185, 372, 621
DpnII	GATC	3 cut(s)	183, 370, 619
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	656
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	5 cut(s)	60, 81, 425, 583, 604
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	5 cut(s)	56, 77, 421, 579, 600
FauNDI	CATATG	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	161, 406
Fsp4HI	GCNGC	2 cut(s)	161, 406
FspBI	CTAG	2 cut(s)	156, 667
GluI	GCNGC	2 cut(s)	161, 406
GsaI	CCCAGC	1 cut(s)	513
Hin1II	CATG	5 cut(s)	60, 81, 425, 583, 604
HinfI	GANTC	2 cut(s)	165, 654
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	3 cut(s)	199, 333, 370
Hpy188III	TCNNGA	2 cut(s)	294, 473
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	65, 90, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	3 cut(s)	252, 358, 444
Hsp92II	CATG	5 cut(s)	60, 81, 425, 583, 604
Kzo9I	GATC	3 cut(s)	183, 370, 619
LmnI	GCTCC	2 cut(s)	296, 333
LpnPI	CCDG	6 cut(s)	88, 279, 345, 441, 495, 623
Lsp1109I	GCAGC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	156, 667
MalI	GATC	3 cut(s)	185, 372, 621
MboI	GATC	3 cut(s)	183, 370, 619
MboII	GAAGA	5 cut(s)	39, 44, 47, 183, 186
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	2 cut(s)	159, 648
MnlI	CCTC	6 cut(s)	12, 339, 367, 455, 549, 625
MseI	TTAA	5 cut(s)	12, 41, 438, 534, 615
MslI	CAYNNNNRTG	3 cut(s)	132, 341, 534
MspA1I	CMGCKG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	515
NcoI	CCATGG	1 cut(s)	56
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	3 cut(s)	183, 370, 619
NlaIII	CATG	5 cut(s)	60, 81, 425, 583, 604
NspI	RCATGY	1 cut(s)	81
OliI	CACNNNNGTG	1 cut(s)	341
PciI	ACATGT	1 cut(s)	77
PctI	GAATGC	1 cut(s)	520
PkrI	GCNGC	2 cut(s)	162, 407
PleI	GAGTC	2 cut(s)	159, 648
PpsI	GAGTC	2 cut(s)	159, 648
PscI	ACATGT	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	308, 364
RsaNI	GTAC	2 cut(s)	307, 363
RseI	CAYNNNNRTG	3 cut(s)	132, 341, 534
SaqAI	TTAA	5 cut(s)	12, 41, 438, 534, 615
SatI	GCNGC	2 cut(s)	161, 406
Sau3AI	GATC	3 cut(s)	183, 370, 619
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	2 cut(s)	159, 648
SduI	GDGCHC	1 cut(s)	338
SmiMI	CAYNNNNRTG	3 cut(s)	132, 341, 534
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	314, 405
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	2 cut(s)	156, 667
StyI	CCWWGG	1 cut(s)	56
TaqI	TCGA	3 cut(s)	182, 399, 652
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	408
Tru1I	TTAA	5 cut(s)	12, 41, 438, 534, 615
Tru9I	TTAA	5 cut(s)	12, 41, 438, 534, 615
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	472
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	81
XspI	CTAG	2 cut(s)	156, 667
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.