Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Reverse (-)

19460458 .. 19460976

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCTGAAGGGATCGAGATCAATGGATTGTATCAACTTCTTTGAAGGAGAAAATTTATGTGATAATTCATGGCCTACAAGAAACTTTGCATGTAGCTTTTGCAAGAGAGAGTTCAGGTCTGCTCAAGCACTTGGGGGTCATATGAATGTTCACAGAAGAGACAGAGCTAGGTTGAGACTCCTACCTCCAACCCTTTCTTCAGAAATATGTCCTCAAATCCCTAGCCCTAACCCTAGCTCTTATTTTTCTACATCATCATCCTCATCTCTTTCATCATGTCATTCCTTGTTTTCTCCTTCTCTGAGGACTCTGGTCTCTACACCTTCATCAGCTTCATCTATGGATGAAAATAAAAAACCGAGATATGACTACTGGCCGGAAAATCATTTTCCTGATCGATTCCCAAGAAAGGCATGGGAGGTGGTGTTGATCATGAGGCTGGACAAATATTTAAGGGTTTTGCACAAAGAGATGATGAATACTTCAACAAGATTGATCCGGAGGAAGAGAATAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

173

Amino Acids

19.98

Weight (kDa)

9.98

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	29 - 53	8.8e-07	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	498
AclWI	GGATC	2 cut(s)	19, 490
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	2 cut(s)	26, 183
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	44, 486
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AluBI	AGCT	4 cut(s)	96, 167, 237, 332
AluI	AGCT	4 cut(s)	96, 167, 237, 332
Alw26I	GTCTC	3 cut(s)	153, 169, 319
AlwI	GGATC	2 cut(s)	19, 490
Aor13HI	TCCGGA	1 cut(s)	498
AoxI	GGCC	2 cut(s)	71, 374
ApoI	RAATTY	1 cut(s)	52
BclI	TGATCA	1 cut(s)	429
BcoDI	GTCTC	3 cut(s)	153, 169, 319
BfaI	CTAG	3 cut(s)	168, 222, 234
BoxI	GACNNNNGTC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	16
BseAI	TCCGGA	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	397
BseGI	GGATG	2 cut(s)	257, 349
BseJI	GATNNNNATC	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	377
BshFI	GGCC	2 cut(s)	73, 376
BshVI	ATCGAT	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	377, 499
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	3 cut(s)	153, 169, 319
BsnI	GGCC	2 cut(s)	73, 376
Bso31I	GGTCTC	1 cut(s)	319
Bsp13I	TCCGGA	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	11, 17, 394, 429, 495
BspANI	GGCC	2 cut(s)	73, 376
BspCNI	CTCAG	1 cut(s)	294
BspDI	ATCGAT	1 cut(s)	397
BspEI	TCCGGA	1 cut(s)	498
BspHI	TCATGA	1 cut(s)	432
BspPI	GGATC	2 cut(s)	19, 490
BspTNI	GGTCTC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	377
BssMI	GATC	5 cut(s)	11, 17, 394, 429, 495
Bst6I	CTCTTC	2 cut(s)	151, 500
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	257, 349
BstKTI	GATC	5 cut(s)	14, 20, 397, 432, 498
BstMAI	GTCTC	3 cut(s)	153, 169, 319
BstMBI	GATC	5 cut(s)	11, 17, 394, 429, 495
BstNSI	RCATGY	1 cut(s)	93
BstPAI	GACNNNNGTC	1 cut(s)	311
Bsu15I	ATCGAT	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	73, 376
BsuTUI	ATCGAT	1 cut(s)	397
BtsCI	GGATG	2 cut(s)	257, 349
CciI	TCATGA	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	397
CviAII	CATG	5 cut(s)	69, 90, 276, 414, 433
CviJI	RGCY	8 cut(s)	73, 96, 167, 225, 237, 332, 376, 439
CviKI_1	RGCY	8 cut(s)	73, 96, 167, 225, 237, 332, 376, 439
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	5 cut(s)	13, 19, 396, 431, 497
DpnII	GATC	5 cut(s)	11, 17, 394, 429, 495
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	151, 500
EarI	CTCTTC	2 cut(s)	151, 500
Eco31I	GGTCTC	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	26, 183
FaeI	CATG	5 cut(s)	72, 93, 279, 417, 436
FatI	CATG	5 cut(s)	68, 89, 275, 413, 432
FauNDI	CATATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	429
FokI	GGATG	2 cut(s)	244, 356
FspBI	CTAG	3 cut(s)	168, 222, 234
HaeIII	GGCC	2 cut(s)	73, 376
HapII	CCGG	2 cut(s)	377, 499
Hin1II	CATG	5 cut(s)	72, 93, 279, 417, 436
HinfI	GANTC	3 cut(s)	177, 307, 399
HpaII	CCGG	2 cut(s)	377, 499
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	202, 303
Hpy188III	TCNNGA	4 cut(s)	15, 392, 433, 499
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	3 cut(s)	38, 306, 333
HpyCH4V	TGCA	3 cut(s)	89, 102, 463
HpyF3I	CTNAG	1 cut(s)	302
Hsp92II	CATG	5 cut(s)	72, 93, 279, 417, 436
Kpn2I	TCCGGA	1 cut(s)	498
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	11, 17, 394, 429, 495
LpnPI	CCDG	7 cut(s)	100, 296, 358, 390, 405, 425, 512
MaeI	CTAG	3 cut(s)	168, 222, 234
MalI	GATC	5 cut(s)	13, 19, 396, 431, 497
MboI	GATC	5 cut(s)	11, 17, 394, 429, 495
MboII	GAAGA	3 cut(s)	168, 189, 517
MluCI	AATT	2 cut(s)	52, 64
MlyI	GAGTC	2 cut(s)	171, 301
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	7 cut(s)	195, 222, 271, 297, 412, 429, 495
MroI	TCCGGA	1 cut(s)	498
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	2 cut(s)	377, 499
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	5 cut(s)	11, 17, 394, 429, 495
NlaIII	CATG	5 cut(s)	72, 93, 279, 417, 436
NspI	RCATGY	1 cut(s)	93
PagI	TCATGA	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	399
PleI	GAGTC	2 cut(s)	171, 301
PpsI	GAGTC	2 cut(s)	171, 301
PshAI	GACNNNNGTC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	452
Sau3AI	GATC	5 cut(s)	11, 17, 394, 429, 495
SchI	GAGTC	2 cut(s)	171, 301
SetI	ASST	9 cut(s)	98, 119, 169, 173, 187, 239, 325, 334, 423
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	2 cut(s)	52, 64
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	3 cut(s)	168, 222, 234
TaqI	TCGA	2 cut(s)	14, 397
TasI	AATT	2 cut(s)	52, 64
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TspDTI	ATGAA	7 cut(s)	57, 158, 261, 315, 324, 360, 491
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	411
XspI	CTAG	3 cut(s)	168, 222, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.