Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Forward (+)

17741674 .. 17742336

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGATTGTGTTAAGTTGAGGTTTGGAAGAGAAGAAGATTTAAGCGATATTTCTCCATGGACTGCAAAGAACTTTACATGTAGCTTTTGCAAGAGAGAATTCAGGTCTGCTCAAGCTCTTGGGGGTCATATGAATGTCCATAGGAGAGATAGAGCTAGGCTGCGACTTCTACCACCTAACTCGATCCTTTCTTCTTCTGAATATTCTCCTTACCCAACTCCTAACCCTAACCCTAACCCTAAGTCTTATTTCTCTCCGTCGCCATCATCATCATCATCTCTTTCAGGAGCTAATAAGTACGTACCGCACTTGCTCTCTCCTCGGAGCACTTATGTGCCCACACCTTCCTCAGGTACTTCAGATCATGAAAACAAGAAACTGATGATATTCGACAGCGGCTCTCATCAACATCATGTTCCTGCTTTCCTTAATCCTAAGAAAAGCGTCAAGGGAGGCAGTGGTCTTGATTATGAGTTTGGAGATTTACTCAATGGTTTTGCTGGGAATGCACAAAAAAAACAACATCTTATTGATGATTTCAAGGTTGTGAGGAAAGATGAGAAGCATATCAACATGATTAGGGAGGATTTGGACATGGGGTTGCTGATTAAAGATCCAAATAAGGAGGAACTGGATTTGGAACTTCGACTCGGGCATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

221

Amino Acids

24.72

Weight (kDa)

8.9

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	25 - 49	1e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	305, 396
AclWI	GGATC	2 cut(s)	178, 608
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	3 cut(s)	299, 303, 355
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	541
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	4 cut(s)	84, 116, 155, 290
AluI	AGCT	4 cut(s)	84, 116, 155, 290
Alw21I	GWGCWC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	178, 608
Ama87I	CYCGRG	1 cut(s)	650
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	650
AxyI	CCTNAGG	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	156, 661
BisI	GCNGC	2 cut(s)	161, 397
BlsI	GCNGC	2 cut(s)	162, 398
BmeT110I	CYCGRG	1 cut(s)	650
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpuEI	CTTGAG	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	56, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	636
Bse21I	CCTNAGG	1 cut(s)	349
BseDI	CCNNGG	2 cut(s)	56, 320
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	650
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	511
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	2 cut(s)	329, 339
Bsp143I	GATC	3 cut(s)	183, 361, 613
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	2 cut(s)	305, 396
BspCNI	CTCAG	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	364
BspPI	GGATC	2 cut(s)	178, 608
BsrI	ACTGG	1 cut(s)	636
BssECI	CCNNGG	2 cut(s)	56, 320
BssMI	GATC	3 cut(s)	183, 361, 613
BssT1I	CCWWGG	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	240, 349, 435
BstDSI	CCRYGG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstKTI	GATC	3 cut(s)	186, 364, 616
BstMBI	GATC	3 cut(s)	183, 361, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	339
BstSNI	TACGTA	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
Bsu36I	CCTNAGG	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
CciI	TCATGA	1 cut(s)	364
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	298, 302, 354
CviAII	CATG	6 cut(s)	57, 78, 365, 413, 574, 595
CviJI	RGCY	6 cut(s)	84, 116, 155, 160, 290, 399
CviKI_1	RGCY	6 cut(s)	84, 116, 155, 160, 290, 399
CviQI	GTAC	3 cut(s)	298, 302, 354
DdeI	CTNAG	3 cut(s)	240, 349, 435
DpnI	GATC	3 cut(s)	185, 363, 615
DpnII	GATC	3 cut(s)	183, 361, 613
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	650
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	6 cut(s)	60, 81, 368, 416, 577, 598
FatI	CATG	6 cut(s)	56, 77, 364, 412, 573, 594
FauNDI	CATATG	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	161, 397
Fsp4HI	GCNGC	2 cut(s)	161, 397
FspBI	CTAG	2 cut(s)	156, 661
GluI	GCNGC	2 cut(s)	161, 397
GsaI	CCCAGC	1 cut(s)	504
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	6 cut(s)	60, 81, 368, 416, 577, 598
HinfI	GANTC	1 cut(s)	648
Hpy188I	TCNGA	3 cut(s)	199, 324, 361
Hpy188III	TCNNGA	3 cut(s)	285, 365, 464
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	65, 90, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	3 cut(s)	240, 349, 435
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	6 cut(s)	60, 81, 368, 416, 577, 598
Kzo9I	GATC	3 cut(s)	183, 361, 613
LmnI	GCTCC	2 cut(s)	287, 324
LpnPI	CCDG	6 cut(s)	88, 270, 336, 432, 486, 617
Lsp1109I	GCAGC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	156, 661
MaeII	ACGT	1 cut(s)	300
MalI	GATC	3 cut(s)	185, 363, 615
MboI	GATC	3 cut(s)	183, 361, 613
MboII	GAAGA	5 cut(s)	39, 44, 47, 183, 186
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	2 cut(s)	329, 339
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	642
MnlI	CCTC	7 cut(s)	12, 330, 358, 446, 543, 577, 619
MseI	TTAA	4 cut(s)	12, 41, 429, 609
MslI	CAYNNNNRTG	2 cut(s)	132, 332
MspA1I	CMGCKG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	511
MwoI	GCNNNNNNNGC	1 cut(s)	506
NcoI	CCATGG	1 cut(s)	56
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	3 cut(s)	183, 361, 613
NlaIII	CATG	6 cut(s)	60, 81, 368, 416, 577, 598
NspI	RCATGY	1 cut(s)	81
OliI	CACNNNNGTG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	364
PciI	ACATGT	1 cut(s)	77
PctI	GAATGC	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	162, 398
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
Ppu21I	YACGTR	1 cut(s)	301
PscI	ACATGT	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	3 cut(s)	299, 303, 355
RsaNI	GTAC	3 cut(s)	298, 302, 354
RseI	CAYNNNNRTG	2 cut(s)	132, 332
SaqAI	TTAA	4 cut(s)	12, 41, 429, 609
SatI	GCNGC	2 cut(s)	161, 397
Sau3AI	GATC	3 cut(s)	183, 361, 613
SchI	GAGTC	1 cut(s)	642
SduI	GDGCHC	2 cut(s)	329, 339
SmiMI	CAYNNNNRTG	2 cut(s)	132, 332
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
SnaBI	TACGTA	1 cut(s)	301
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	305, 396
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	2 cut(s)	156, 661
StyI	CCWWGG	1 cut(s)	56
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	3 cut(s)	182, 390, 646
TasI	AATT	1 cut(s)	98
TauI	GCSGC	1 cut(s)	399
Tru1I	TTAA	4 cut(s)	12, 41, 429, 609
Tru9I	TTAA	4 cut(s)	12, 41, 429, 609
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	146, 381
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	463
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	81
XspI	CTAG	2 cut(s)	156, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.