Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Reverse (-)

28327813 .. 28328844

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1188200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTGAAGGGATCGAGATCGATGGATTGTATCAACTTCTTTGAAGGAGAAAATTTATGTGATAATTCATGGGCTACAAGAAACTTTGCATGTAGCTTTTGCAAGAGAGAGTTCAGGTCTGCTCAAGCACTTGGGGGTCATATGAATGTTCACAGAAGAGACAGAGCTAGGTTGAGACTCCTACCGCCAACCCGTTCTTCAGAAATATGTCCTCAAAACCCTAGCCCTAACCCTAGCTCTTATTTTTCTACATCATCATCCTCATCTCTTTCATCATGTCATTCCTTGTTTTCTCCTTCTCTGAAGACTCTGGTCTCTACACCTTCATCAGCTTCATCTATGGATGAAAATAAAAAACCGAGATATGACTACTGGCCGGAAAATCACTTTCCTGATCTGATTCTCAAGAAAGGCATGGGAGGTGGTGCTGATCATGAGGCTGGACAAATATTTAAGGGTTTTGCACAAAGAGATGATGAATACTTCAACAAGATTGATCCGGAGGAAGAAAATAAAATAATTAGGGTTGACTTGGAGTTGGACTTGGATTTGGACATAGGGTTGCTCAAAGATCACAAGGAGGAAGTGGATCTGGAGCTTCGACTTGGTCATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

206

Amino Acids

23.22

Weight (kDa)

5.81

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	29 - 53	1.1e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	3 cut(s)	19, 491, 597
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	3 cut(s)	26, 183, 323
AgsI	TTSAA	2 cut(s)	44, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AluBI	AGCT	5 cut(s)	96, 167, 237, 332, 598
AluI	AGCT	5 cut(s)	96, 167, 237, 332, 598
Alw26I	GTCTC	3 cut(s)	153, 169, 319
AlwI	GGATC	3 cut(s)	19, 491, 597
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	311
BccI	CCATC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	153, 169, 319
BfaI	CTAG	3 cut(s)	168, 222, 234
BoxI	GACNNNNGTC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	614
BpuEI	CTTGAG	2 cut(s)	108, 389
Bsa29I	ATCGAT	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	16
BseAI	TCCGGA	1 cut(s)	499
BseCI	ATCGAT	1 cut(s)	20
BseGI	GGATG	2 cut(s)	257, 349
BseJI	GATNNNNATC	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	377, 500
BsmAI	GTCTC	3 cut(s)	153, 169, 319
BsnI	GGCC	1 cut(s)	376
Bso31I	GGTCTC	1 cut(s)	319
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	7 cut(s)	11, 17, 394, 430, 496, 571, 589
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	20
BspEI	TCCGGA	1 cut(s)	499
BspHI	TCATGA	1 cut(s)	433
BspPI	GGATC	3 cut(s)	19, 491, 597
BspTNI	GGTCTC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	377
BssMI	GATC	7 cut(s)	11, 17, 394, 430, 496, 571, 589
Bst6I	CTCTTC	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	257, 349
BstKTI	GATC	7 cut(s)	14, 20, 397, 433, 499, 574, 592
BstMAI	GTCTC	3 cut(s)	153, 169, 319
BstMBI	GATC	7 cut(s)	11, 17, 394, 430, 496, 571, 589
BstNSI	RCATGY	1 cut(s)	93
BstPAI	GACNNNNGTC	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	376
BsuTUI	ATCGAT	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	257, 349
CciI	TCATGA	1 cut(s)	433
ClaI	ATCGAT	1 cut(s)	20
CviAII	CATG	5 cut(s)	69, 90, 276, 415, 434
CviJI	RGCY	9 cut(s)	74, 96, 167, 225, 237, 332, 376, 440, 598
CviKI_1	RGCY	9 cut(s)	74, 96, 167, 225, 237, 332, 376, 440, 598
DpnI	GATC	7 cut(s)	13, 19, 396, 432, 498, 573, 591
DpnII	GATC	7 cut(s)	11, 17, 394, 430, 496, 571, 589
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	319
Eco57I	CTGAAG	3 cut(s)	26, 183, 323
FaeI	CATG	5 cut(s)	72, 93, 279, 418, 437
FatI	CATG	5 cut(s)	68, 89, 275, 414, 433
FauNDI	CATATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	430
FokI	GGATG	2 cut(s)	244, 356
FspBI	CTAG	3 cut(s)	168, 222, 234
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	2 cut(s)	377, 500
Hin1II	CATG	5 cut(s)	72, 93, 279, 418, 437
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	177, 307, 400
HpaII	CCGG	2 cut(s)	377, 500
Hpy166II	GTNNAC	2 cut(s)	151, 529
Hpy188I	TCNGA	3 cut(s)	202, 303, 399
Hpy188III	TCNNGA	6 cut(s)	15, 392, 406, 434, 500, 593
Hpy8I	GTNNAC	2 cut(s)	151, 529
HpyAV	CCTTC	3 cut(s)	38, 306, 333
HpyCH4V	TGCA	3 cut(s)	89, 102, 464
Hsp92II	CATG	5 cut(s)	72, 93, 279, 418, 437
Kpn2I	TCCGGA	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	7 cut(s)	11, 17, 394, 430, 496, 571, 589
LmnI	GCTCC	1 cut(s)	595
LpnPI	CCDG	8 cut(s)	100, 296, 358, 390, 405, 426, 513, 578
MaeI	CTAG	3 cut(s)	168, 222, 234
MalI	GATC	7 cut(s)	13, 19, 396, 432, 498, 573, 591
MboI	GATC	7 cut(s)	11, 17, 394, 430, 496, 571, 589
MboII	GAAGA	4 cut(s)	168, 189, 316, 518
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	3 cut(s)	52, 64, 519
MlyI	GAGTC	2 cut(s)	171, 301
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	6 cut(s)	222, 271, 413, 430, 496, 574
MroI	TCCGGA	1 cut(s)	499
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	2 cut(s)	377, 500
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	7 cut(s)	11, 17, 394, 430, 496, 571, 589
NlaIII	CATG	5 cut(s)	72, 93, 279, 418, 437
NspI	RCATGY	1 cut(s)	93
PagI	TCATGA	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	400
PflFI	GACNNNGTC	1 cut(s)	606
PleI	GAGTC	2 cut(s)	171, 301
PpsI	GAGTC	2 cut(s)	171, 301
PshAI	GACNNNNGTC	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	606
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	453
Sau3AI	GATC	7 cut(s)	11, 17, 394, 430, 496, 571, 589
SchI	GAGTC	2 cut(s)	171, 301
SetI	ASST	9 cut(s)	98, 119, 169, 173, 239, 325, 334, 424, 600
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	123, 404
SmoI	CTYRAG	2 cut(s)	123, 404
Sse9I	AATT	3 cut(s)	52, 64, 519
SsiI	CCGC	1 cut(s)	185
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	3 cut(s)	168, 222, 234
TaqI	TCGA	3 cut(s)	14, 20, 601
TasI	AATT	3 cut(s)	52, 64, 519
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TspDTI	ATGAA	7 cut(s)	57, 158, 261, 315, 324, 360, 492
Tth111I	GACNNNGTC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	3 cut(s)	168, 222, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.