Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Forward (+)

17657824 .. 17658976

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAAGAGAACACATTTGGCAAGTTTTAGTAACAGAGACAAAACCCAAGAAGAAGAAGGAGAAGACGGTAATGGTGACAACAGAGTCATCATGAATCACTACAAGAATTACGAAGCTGGGCTGATCCCATGGCCTCCCAAGAATTACACTTGCAGCTTCTGCAGGAGAGAGTTCAGATCTGCTCAAGCACTTGGAGGCCACATGAATGTTCATAGAAGAGACAGAGCAAAACTCAGGCAGATCCCTTCTTGGCTCTTCGAACCTCACCACCACACACCTATTGCAAACCCTAACCCTAATTTTAGCTCTTCTTCTTCCTCTTCAACAACAACAGCTCATCTTGAGCCTTCCCTAACCAACCAGAGATCCAAAACCACTCCTTTTCCTTCTGCCCGGTTTGATCTTTTGGACAGTACTACTAGCTATGGAGGTTTGATGATGGACAGAGAGAAGAACAAGAGCAATGTATGTAGCAGAGAGATCAAGAAAAGTGCCATCGATGCATGTCATTCAGTAAGATGTGAGATAAGCCGTGGGGATCTGATGAATAAGAAAGATGATCAAGTCATGGGGTTGGAGCTTGGGATGAGTTTGAGGAATCCCAACCAAGTTCTTGATTTGGAGCTTCGACTAGGCTACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

214

Amino Acids

24.35

Weight (kDa)

8.99

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	75 - 99	8.9e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AclWI	GGATC	4 cut(s)	118, 235, 360, 546
AfaI	GTAC	1 cut(s)	415
AgsI	TTSAA	1 cut(s)	324
AluBI	AGCT	7 cut(s)	116, 156, 306, 335, 423, 580, 625
AluI	AGCT	7 cut(s)	116, 156, 306, 335, 423, 580, 625
Alw26I	GTCTC	2 cut(s)	30, 213
AlwI	GGATC	4 cut(s)	118, 235, 360, 546
AlwNI	CAGNNNCTG	1 cut(s)	159
AoxI	GGCC	2 cut(s)	131, 196
ApeKI	GCWGC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	86, 257
AsuII	TTCGAA	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	433, 503
BceAI	ACGGC	1 cut(s)	516
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	30, 213
BfaI	CTAG	2 cut(s)	420, 632
BfmI	CTRYAG	1 cut(s)	160
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	168, 362
BpuMI	CCSGG	1 cut(s)	394
Bsa29I	ATCGAT	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	128, 532
Bse3DI	GCAATG	1 cut(s)	469
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	128, 532
BseGI	GGATG	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	2 cut(s)	133, 198
BshVI	ATCGAT	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	30, 213
BsnI	GGCC	2 cut(s)	133, 198
Bsp119I	TTCGAA	1 cut(s)	258
Bsp143I	GATC	8 cut(s)	123, 176, 240, 365, 400, 480, 538, 559
Bsp19I	CCATGG	1 cut(s)	128
BspANI	GGCC	2 cut(s)	133, 198
BspCNI	CTCAG	1 cut(s)	246
BspDI	ATCGAT	1 cut(s)	498
BspHI	TCATGA	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	164
BspPI	GGATC	4 cut(s)	118, 235, 360, 546
BspQI	GCTCTTC	2 cut(s)	260, 313
BspT104I	TTCGAA	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	128, 532
BssMI	GATC	8 cut(s)	123, 176, 240, 365, 400, 480, 538, 559
BssT1I	CCWWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	68, 413
Bst6I	CTCTTC	4 cut(s)	211, 260, 313, 325
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	2 cut(s)	128, 532
BstF5I	GGATG	1 cut(s)	591
BstKTI	GATC	8 cut(s)	126, 179, 243, 368, 403, 483, 541, 562
BstMAI	GTCTC	2 cut(s)	30, 213
BstMBI	GATC	8 cut(s)	123, 176, 240, 365, 400, 480, 538, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 500
BstNSI	RCATGY	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	4 cut(s)	176, 240, 365, 538
BstYI	RGATCY	4 cut(s)	176, 240, 365, 538
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	133, 198
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	2 cut(s)	128, 532
BtsCI	GGATG	1 cut(s)	591
CaiI	CAGNNNCTG	1 cut(s)	159
CciI	TCATGA	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	5 cut(s)	91, 129, 202, 504, 568
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	8 cut(s)	125, 178, 242, 367, 402, 482, 540, 561
DpnII	GATC	8 cut(s)	123, 176, 240, 365, 400, 480, 538, 559
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	4 cut(s)	211, 260, 313, 325
EarI	CTCTTC	4 cut(s)	211, 260, 313, 325
Eco130I	CCWWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	5 cut(s)	94, 132, 205, 507, 571
FaiI	YATR	8 cut(s)	92, 130, 203, 213, 426, 469, 505, 569
FatI	CATG	5 cut(s)	90, 128, 201, 503, 567
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	598
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	2 cut(s)	420, 632
GluI	GCNGC	1 cut(s)	154
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	133, 198
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	5 cut(s)	94, 132, 205, 507, 571
HinfI	GANTC	3 cut(s)	84, 94, 598
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	2 cut(s)	86, 257
Hpy188I	TCNGA	2 cut(s)	176, 543
Hpy188III	TCNNGA	4 cut(s)	91, 341, 484, 614
HpyAV	CCTTC	4 cut(s)	50, 255, 357, 396
HpyCH4III	ACNGT	2 cut(s)	68, 413
HpyCH4V	TGCA	4 cut(s)	153, 162, 284, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 500
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	5 cut(s)	94, 132, 205, 507, 571
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	8 cut(s)	123, 176, 240, 365, 400, 480, 538, 559
LguI	GCTCTTC	2 cut(s)	260, 313
LmnI	GCTCC	2 cut(s)	577, 622
LpnPI	CCDG	5 cut(s)	102, 148, 220, 374, 407
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	420, 632
MaeIII	GTNAC	2 cut(s)	29, 74
MalI	GATC	8 cut(s)	125, 178, 242, 367, 402, 482, 540, 561
MboI	GATC	8 cut(s)	123, 176, 240, 365, 400, 480, 538, 559
MflI	RGATCY	4 cut(s)	176, 240, 365, 538
MluCI	AATT	3 cut(s)	106, 142, 298
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	6 cut(s)	144, 188, 273, 328, 422, 588
Mph1103I	ATGCAT	1 cut(s)	505
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	159, 500
NciI	CCSGG	1 cut(s)	394
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	8 cut(s)	123, 176, 240, 365, 400, 480, 538, 559
NlaIII	CATG	5 cut(s)	94, 132, 205, 507, 571
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	1 cut(s)	507
NspV	TTCGAA	1 cut(s)	258
PagI	TCATGA	1 cut(s)	90
PciSI	GCTCTTC	2 cut(s)	260, 313
PfeI	GAWTC	2 cut(s)	94, 598
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	159
PsuI	RGATCY	4 cut(s)	176, 240, 365, 538
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	2 cut(s)	260, 313
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	8 cut(s)	123, 176, 240, 365, 400, 480, 538, 559
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	183, 341
SmoI	CTYRAG	2 cut(s)	183, 341
Sse9I	AATT	3 cut(s)	106, 142, 298
SspMI	CTAG	2 cut(s)	420, 632
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	68, 413
TaqI	TCGA	3 cut(s)	258, 498, 628
TasI	AATT	3 cut(s)	106, 142, 298
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	94, 598
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	5 cut(s)	17, 107, 200, 218, 560
XceI	RCATGY	1 cut(s)	507
XspI	CTAG	2 cut(s)	420, 632
ZrmI	AGTACT	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.