Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Reverse (-)

18177439 .. 18179081

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATGGATTGTGTTAAGTTGAGGTTTGGAAGAGAAGAAGATTTAAGCGATATTTCTCCATGGACTCCAAAGAACTTTACATGTAGCTTCTGCAAGAGAGAATTCAGGTCTGCTCAAGCTCTTGGGGGTCATATGAATGTCCACAGGAGAGACAGAGCTAGGCTTCGGCTCCTACCACCTAACTCGGTCCCTTCTTCTTCCGAATATTCTCCTTACCCTAATCCTAACCCTAACCCTAACCCTAAGTCTTACTTCTCTCCTTCGCCATCATCATCATCATCTCTTTCAGGTGCTAACAAGTACTTACCACACTTGGTCTCTCCTCGGAGCACTTATGTGTCCACACCTTCCTCAGGTACTTTAGACCATGAAAACAAGAAACTGATGTTCAACAGCGGTTCTCATCAACATCATGCTCCTCCTTTCCTTCATCCTAAGACAGGCCTCAAGAGAAGCAGTGCTCTTGATTATGAGTTTGGAGATCAACTCAATGGATTTGCTGGGTTTGCACAAAAACATCATCTCGATGATGATTTTGAAGTTGTGAAGAAAGATGAAAAGCATATCAACATGATTAGGGAAGAATTGGACATGGGGTTGCTGATTAAAGATCCTAATAAGGTGGACGTGGATTTGGAACTTCGACTCGGGCATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

220

Amino Acids

24.74

Weight (kDa)

8.39

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	26 - 50	1e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	605
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	2 cut(s)	302, 358
AfiI	CCNNNNNNNGG	2 cut(s)	353, 440
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	391, 539
AjiI	CACGTC	1 cut(s)	628
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	87, 119, 158
AluI	AGCT	3 cut(s)	87, 119, 158
Alw21I	GWGCWC	2 cut(s)	332, 463
Alw26I	GTCTC	2 cut(s)	144, 322
AlwI	GGATC	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	442
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	187
AxyI	CCTNAGG	1 cut(s)	352
Bbv12I	GWGCWC	2 cut(s)	332, 463
BccI	CCATC	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	144, 322
BfaI	CTAG	2 cut(s)	159, 658
BmcAI	AGTACT	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	647
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	170, 189
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpuEI	CTTGAG	2 cut(s)	99, 431
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	59, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 440
Bse21I	CCTNAGG	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	59, 323
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	2 cut(s)	353, 440
BseMII	CTCAG	1 cut(s)	366
BseRI	GAGGAG	2 cut(s)	312, 408
BseYI	CCCAGC	1 cut(s)	500
BshFI	GGCC	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	332, 463
BsiHKCI	CYCGRG	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	353, 440
BsmAI	GTCTC	2 cut(s)	144, 322
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	444
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	647
Bsp1286I	GDGCHC	2 cut(s)	332, 463
Bsp143I	GATC	2 cut(s)	481, 610
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	365
BspLI	GGNNCC	2 cut(s)	170, 189
BspPI	GGATC	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	59, 323
BssMI	GATC	2 cut(s)	481, 610
BssT1I	CCWWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	243, 352, 435
BstDSI	CCRYGG	1 cut(s)	59
BstENI	CCTNNNNNAGG	2 cut(s)	351, 438
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	2 cut(s)	484, 613
BstMAI	GTCTC	2 cut(s)	144, 322
BstMBI	GATC	2 cut(s)	481, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
Bsu36I	CCTNAGG	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	301, 357
CviAII	CATG	6 cut(s)	60, 81, 368, 413, 571, 592
CviJI	RGCY	6 cut(s)	87, 119, 158, 163, 169, 444
CviKI_1	RGCY	6 cut(s)	87, 119, 158, 163, 169, 444
CviQI	GTAC	2 cut(s)	301, 357
DdeI	CTNAG	3 cut(s)	243, 352, 435
DpnI	GATC	2 cut(s)	483, 612
DpnII	GATC	2 cut(s)	481, 610
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	187
Eco81I	CCTNAGG	1 cut(s)	352
Eco88I	CYCGRG	1 cut(s)	647
EcoNI	CCTNNNNNAGG	2 cut(s)	351, 438
EcoRI	GAATTC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	6 cut(s)	63, 84, 371, 416, 574, 595
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	6 cut(s)	59, 80, 367, 412, 570, 591
FauNDI	CATATG	1 cut(s)	132
FokI	GGATG	1 cut(s)	417
FspBI	CTAG	2 cut(s)	159, 658
GsaI	CCCAGC	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	444
Hin1II	CATG	6 cut(s)	63, 84, 371, 416, 574, 595
HinfI	GANTC	2 cut(s)	64, 645
Hpy166II	GTNNAC	3 cut(s)	142, 342, 625
Hpy188I	TCNGA	2 cut(s)	202, 327
Hpy188III	TCNNGA	3 cut(s)	448, 464, 524
Hpy8I	GTNNAC	3 cut(s)	142, 342, 625
HpyAV	CCTTC	4 cut(s)	201, 270, 357, 437
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	2 cut(s)	93, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	3 cut(s)	243, 352, 435
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	6 cut(s)	63, 84, 371, 416, 574, 595
Kzo9I	GATC	2 cut(s)	481, 610
LmnI	GCTCC	3 cut(s)	174, 327, 421
LpnPI	CCDG	6 cut(s)	91, 130, 273, 339, 426, 486
MaeI	CTAG	2 cut(s)	159, 658
MaeII	ACGT	1 cut(s)	627
MalI	GATC	2 cut(s)	483, 612
MboI	GATC	2 cut(s)	481, 610
MboII	GAAGA	7 cut(s)	42, 47, 50, 186, 189, 559, 593
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	2 cut(s)	332, 463
MluCI	AATT	2 cut(s)	101, 584
MlyI	GAGTC	2 cut(s)	58, 639
MnlI	CCTC	5 cut(s)	15, 333, 361, 429, 455
MseI	TTAA	3 cut(s)	15, 44, 606
MslI	CAYNNNNRTG	3 cut(s)	135, 335, 525
MspA1I	CMGCKG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	506
NcoI	CCATGG	1 cut(s)	59
NdeI	CATATG	1 cut(s)	132
NdeII	GATC	2 cut(s)	481, 610
NlaIII	CATG	6 cut(s)	63, 84, 371, 416, 574, 595
NlaIV	GGNNCC	2 cut(s)	170, 189
NspI	RCATGY	1 cut(s)	84
OliI	CACNNNNGTG	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	444
PciI	ACATGT	1 cut(s)	80
PleI	GAGTC	2 cut(s)	58, 639
PpsI	GAGTC	2 cut(s)	58, 639
PscI	ACATGT	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	170, 189
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	2 cut(s)	302, 358
RsaNI	GTAC	2 cut(s)	301, 357
RseI	CAYNNNNRTG	3 cut(s)	135, 335, 525
SaqAI	TTAA	3 cut(s)	15, 44, 606
Sau3AI	GATC	2 cut(s)	481, 610
Sau96I	GGNCC	1 cut(s)	187
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	2 cut(s)	58, 639
SduI	GDGCHC	2 cut(s)	332, 463
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	3 cut(s)	135, 335, 525
SmlI	CTYRAG	2 cut(s)	114, 446
SmoI	CTYRAG	2 cut(s)	114, 446
Sse9I	AATT	2 cut(s)	101, 584
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	1 cut(s)	396
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	2 cut(s)	159, 658
StuI	AGGCCT	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	59
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	2 cut(s)	525, 643
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	101, 584
TatI	WGTACW	1 cut(s)	300
Tru1I	TTAA	3 cut(s)	15, 44, 606
Tru9I	TTAA	3 cut(s)	15, 44, 606
TscAI	CASTG	1 cut(s)	463
TspDTI	ATGAA	4 cut(s)	149, 384, 419, 570
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	187
XagI	CCTNNNNNAGG	2 cut(s)	351, 438
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	1 cut(s)	84
XspI	CTAG	2 cut(s)	159, 658
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.