Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010911

Physical Location & Seq

Genomic Coordinates Reverse (-)

21660424 .. 21661014

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAATTGTATCAACTTCTTTGAAGGAGAAAATTTATGTGATATTTCATGGGCTACAAGAAACTTCGCATGTAGCTTTTGCAAGAGAGAGTTCAGGTCTGCTCAAGCTCTTGGGGGTCATATGAATGTCCATAGAAGAGACAGAGCTAGGCTGAGACTCCTTCCTCCTACCCTTTCTTCAGAAATATGTCCTCAAAACCCTAACCCTAGTTCTTATTTTGCTACTTCATCATCCTCATCTCCTTCATCATGTCATTCCTTGTTTTCTCCTTCTCTGAGGACTCGGGTCTCTGCACCTTCATCAGCTTCATCTATGGATGAAAATAAGAAACCGAGATACGACTACTGGCCGGAAAATCACTTTCCTGATCTGATTCCCAAGAAAGGCATGGGAGGTGGTGTTGATCATGAGGCTGGACACATATTTAAGGGTTTTTCACAAAGAGATGATGAGTACTTCAACAAGATTGATCTGGAGAAAGAGAATAATATAATTCGGGTTGACTTGGGGTTGGACTTGGATTTGGACATAGGGTTGGTCAAAGATCACAAGGAGGAAGTGGATCTGGAACTTCGACTTGGGCATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

197

Amino Acids

22.19

Weight (kDa)

6.06

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	22 - 46	1.1e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42410 AT2G42410 AT2G42410
fragaria_vesca	FvH4_2g22040
malus_domestica	MD05G1201600.v1.1 MD10G1188200.v1.1
prunus_persica	Prupe.8G228000_v2.0.a1 Prupe.8G228000_v2.0.a1
pyrus_communis	pycom05g18820 pycom10g16270
rosa_chinensis	RchiOBHm_Chr6g0288901
rosa_laevigata	RLG00000012350
rosa_multiflora	Rmu_sc0005314.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179760
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310600 Rh6BG317100 Rh6CG323800 Rh6DG309500
rosa_wichuraiana	Rw6G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	570
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	23, 460
AjuI	GAANNNNNNNTTGG	1 cut(s)	561
AluBI	AGCT	4 cut(s)	75, 107, 146, 305
AluI	AGCT	4 cut(s)	75, 107, 146, 305
Alw26I	GTCTC	3 cut(s)	132, 148, 292
AlwI	GGATC	1 cut(s)	570
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	3 cut(s)	132, 148, 292
BfaI	CTAG	2 cut(s)	147, 207
BmcAI	AGTACT	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	282
BoxI	GACNNNNGTC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	350
BseGI	GGATG	2 cut(s)	230, 322
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	143, 266
BseNI	ACTGG	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	3 cut(s)	132, 148, 292
BsnI	GGCC	1 cut(s)	349
Bso31I	GGTCTC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	367, 403, 469, 544, 562
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	144, 267
BspHI	TCATGA	1 cut(s)	406
BspPI	GGATC	1 cut(s)	570
BspTNI	GGTCTC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	5 cut(s)	367, 403, 469, 544, 562
Bst6I	CTCTTC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	152, 275
BstF5I	GGATG	2 cut(s)	230, 322
BstKTI	GATC	5 cut(s)	370, 406, 472, 547, 565
BstMAI	GTCTC	3 cut(s)	132, 148, 292
BstMBI	GATC	5 cut(s)	367, 403, 469, 544, 562
BstNSI	RCATGY	1 cut(s)	72
BstPAI	GACNNNNGTC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	230, 322
CciI	TCATGA	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	5 cut(s)	48, 69, 249, 388, 407
CviJI	RGCY	8 cut(s)	53, 75, 107, 146, 151, 305, 349, 413
CviKI_1	RGCY	8 cut(s)	53, 75, 107, 146, 151, 305, 349, 413
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	152, 275
DpnI	GATC	5 cut(s)	369, 405, 471, 546, 564
DpnII	GATC	5 cut(s)	367, 403, 469, 544, 562
EaeI	YGGCCR	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	282
FaeI	CATG	5 cut(s)	51, 72, 252, 391, 410
FatI	CATG	5 cut(s)	47, 68, 248, 387, 406
FauNDI	CATATG	1 cut(s)	120
FbaI	TGATCA	1 cut(s)	403
FokI	GGATG	2 cut(s)	217, 329
FspBI	CTAG	2 cut(s)	147, 207
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	5 cut(s)	51, 72, 252, 391, 410
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	3 cut(s)	156, 280, 373
HpaII	CCGG	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	3 cut(s)	181, 276, 372
Hpy188III	TCNNGA	4 cut(s)	365, 407, 473, 566
Hpy8I	GTNNAC	1 cut(s)	502
HpyAV	CCTTC	5 cut(s)	17, 170, 252, 279, 306
HpyCH4V	TGCA	2 cut(s)	81, 293
HpyF3I	CTNAG	2 cut(s)	152, 275
Hsp92II	CATG	5 cut(s)	51, 72, 252, 391, 410
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	367, 403, 469, 544, 562
LpnPI	CCDG	7 cut(s)	79, 331, 363, 378, 399, 458, 551
MaeI	CTAG	2 cut(s)	147, 207
MalI	GATC	5 cut(s)	369, 405, 471, 546, 564
MboI	GATC	5 cut(s)	367, 403, 469, 544, 562
MboII	GAAGA	2 cut(s)	147, 168
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	3 cut(s)	4, 31, 492
MlyI	GAGTC	2 cut(s)	150, 274
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	174, 201, 244, 270, 386, 403, 547
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	120
NdeII	GATC	5 cut(s)	367, 403, 469, 544, 562
NlaIII	CATG	5 cut(s)	51, 72, 252, 391, 410
NspI	RCATGY	1 cut(s)	72
PagI	TCATGA	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	373
PleI	GAGTC	2 cut(s)	150, 274
PpsI	GAGTC	2 cut(s)	150, 274
PshAI	GACNNNNGTC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	5 cut(s)	367, 403, 469, 544, 562
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	2 cut(s)	150, 274
SetI	ASST	7 cut(s)	77, 98, 109, 148, 298, 307, 397
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	4, 31, 492
SspMI	CTAG	2 cut(s)	147, 207
TaqI	TCGA	1 cut(s)	574
TasI	AATT	3 cut(s)	4, 31, 492
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TspDTI	ATGAA	8 cut(s)	17, 36, 137, 216, 234, 288, 297, 333
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	2 cut(s)	147, 207
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.