Rroxscaffold_7G00179810

Bet1-like SNARE

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
19301000 .. 19304156
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179810.1

Sequence Viewer

Length: 336 bp
ATGAATGCTCGAAGGGACTACCGCAACAACAAAGTCGCTCTTTTTGATGGCATTGAGGAGGGTGGCATCAGGGCCTCATCTTCCTATTCCCATGAAATCGATGAGCAAGATAATGAAAGGGCAGTGGAAGGATTGCAAGATAGAGTCAATTTGCTGAAGAGATTGTCAGGTGACATACATGAGGAGGTGGAGAGTCATAATCACATGCTGGACCGAATGGGAAATGATATGGATTCATCAAGGGGAGTGCTATCCGGTACAATGGACAGGTTTTTGAGACCAAGTCAAGCCAGAGAATGTTTACACTGGTGGCATCATTTCTGGTCGTCTTTCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.99

Weight (kDa)

5.57

Isoelectric Point (pI)

63.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 271
AoxI GGCC 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 72, 211
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 211
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 72, 211
BmsI GCATC 2 cut(s) 75, 322
Bsa29I ATCGAT 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 311
BseCI ATCGAT 1 cut(s) 99
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 71, 197
BshFI GGCC 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 99
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 271
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 74
BspDI ATCGAT 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 304
Cfr13I GGNCC 2 cut(s) 72, 211
ClaI ATCGAT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 258
CviAII CATG 3 cut(s) 92, 179, 205
CviJI RGCY 2 cut(s) 74, 290
CviKI_1 RGCY 2 cut(s) 74, 290
CviQI GTAC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 72
FaeI CATG 3 cut(s) 95, 182, 208
FaiI YATR 6 cut(s) 93, 176, 180, 198, 206, 230
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 91, 178, 204
FspBI CTAG 1 cut(s) 334
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 255
Hin1II CATG 3 cut(s) 95, 182, 208
HinfI GANTC 3 cut(s) 144, 193, 233
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 6, 122
HpyCH4V TGCA 1 cut(s) 136
Hsp92II CATG 3 cut(s) 95, 182, 208
LpnPI CCDG 8 cut(s) 55, 153, 194, 253, 268, 292, 304, 307
LweI GCATC 2 cut(s) 75, 322
MaeI CTAG 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 2 cut(s) 72, 169
MluCI AATT 1 cut(s) 148
MlyI GAGTC 2 cut(s) 153, 202
MnlI CCTC 5 cut(s) 49, 52, 85, 175, 178
MspI CCGG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 10
NlaIII CATG 3 cut(s) 95, 182, 208
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 1 cut(s) 208
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 282
PleI GAGTC 2 cut(s) 152, 201
PpsI GAGTC 2 cut(s) 152, 201
PspPI GGNCC 2 cut(s) 72, 211
PsyI GACNNNGTC 1 cut(s) 282
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 72, 211
SchI GAGTC 2 cut(s) 153, 202
SetI ASST 3 cut(s) 172, 189, 272
SfaNI GCATC 2 cut(s) 75, 322
SinI GGWCC 1 cut(s) 211
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 334
TaqI TCGA 2 cut(s) 10, 99
TaqII GACCGA 1 cut(s) 228
TasI AATT 1 cut(s) 148
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 2 cut(s) 129, 311
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 4 cut(s) 17, 108, 129, 225
TspRI CASTG 2 cut(s) 129, 311
Tth111I GACNNNGTC 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 211
XceI RCATGY 1 cut(s) 208
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.