Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015982

Physical Location & Seq

Genomic Coordinates Forward (+)

21993253 .. 21995331

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAGAAGAAAGGCCAGCATGGTACATATGAATCAATGATGACTCATCATCCGATCCTCTGTATCATTGCTTTATCTGTACTTTTCATAGCAATCGACCCCTTTCACATGAGTCCAATCGGGGGTCGTGAGTTCAAACCCGTGAAGCATGAGGTTGCTCCATATAAGGAAGTCATGGGAAGCTGGCCTAGAGACAACCTTAGTCGACTGGGTAATCATGGGAAACTGGAGTTCGTGGACCAAGTCTTTGGTCCAGAGTCATTAGAGTTTGATAGTTTAGGTCGTGGTCCATACACAGGGTTGGCTGATGGAAGAGTGGTTAGATGGATGGGTGAAGCAATCGGATGGGAGACATTTTCGGTGGTAACATCAAAATGGTCAGAGGAAGCTTGTGTGAGAGGTGTGGATTCAACAACAAACAAGCAATGGAAGCACGAGAAGCTGTGTGGGAGGCCTCTTGGACTGAGATTTCATAAAGAGACAGGAAATTTGTATATTGCAGACGCTTACTATGGTCTACTTGTGGTTGGTCCTGAAGGAGGGATTGCTACGCCTTTAGCTACTCATGTGGAAGGAAAGCCTATACTCTTTGCCAATGACCTTGACATCCATAGAAATGGCTCCATCTTCTTCACTGACACCAGCAAAAGATATGACAGAGCGAATCATTTCTTTATATTACTGGAAGGAGAATCAACAGGAAGGCTTCTAAGATATGACCCACCTACCAAAACAACACACATTGTGCTGGAGGGTTTGGCTTTTCCCAATGGAATTCAACTCTCTAAAGACCAATCTTTCCTCCTCTTCACCGAAACAACCAATTGCAGATTGGTGAAGTACTGGCTGGAGGGTCCAAAGATGGGTGAAGTCGAGGTGGTGGCAGATCTCCCGGGATTCCCAGACAATGTAAGAATAAATGAAGAGGGTCAGTTTTGGGTTGCAATTGATTGTTGCAGAACACCGGCACAAGAGGTTCTTACAAACAACCCTTGGATAAGAAGCATCTACTTTCGGTTGCCAATACCGATGAAGCTGCTTGCGAAAACGATGGGGATGAGAATGTACACTGTGATATCGAGATTCGACGAGGAAGGTAAAGTCCTGGAGGTGCTCGAGGATAGACAAGGGAAGGTAATGAAGCTTTGGATTGGAACAGTGGCTCATAACCACATTGCCACTCTACCTTATCCTTTGACAATGAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0016788 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

403

Amino Acids

45.63

Weight (kDa)

6.41

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	136 - 316	1.3e-19	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	199 - 285	7.6e-30	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59530 AT3G59530 AT3G59530
fragaria_vesca	FvH4_2g10610
malus_domestica	MD04G1040000.v1.1
prunus_persica	Prupe.1G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268261
rosa_laevigata	RLG00000013923
rosa_multiflora	Rmu_sc0007606.1_g000010 Rmu_sc0010202.1_g000005
rosa_roxburghii	Rroxscaffold_7G00199930
rosa_rugosa	Rorug06G0040300
rosa_samantha	Rh6CG154000 Rh6DG150000
rosa_wichuraiana	Rw6G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	205, 517
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	487, 774
AcuI	CTGAAG	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	745
AfaI	GTAC	4 cut(s)	25, 81, 842, 1067
AfiI	CCNNNNNNNGG	4 cut(s)	122, 296, 539, 863
AgsI	TTSAA	3 cut(s)	136, 411, 779
AjnI	CCWGG	1 cut(s)	1104
AluBI	AGCT	6 cut(s)	183, 389, 442, 560, 1036, 1144
AluI	AGCT	6 cut(s)	183, 389, 442, 560, 1036, 1144
Alw21I	GWGCWC	1 cut(s)	1116
Alw26I	GTCTC	3 cut(s)	186, 344, 473
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	2 cut(s)	892, 1115
AoxI	GGCC	3 cut(s)	13, 185, 452
ApeKI	GCWGC	1 cut(s)	1036
ApoI	RAATTY	2 cut(s)	487, 774
ArsI	GACNNNNNNTTYG	4 cut(s)	230, 262, 472, 504
Asp700I	GAANNNNTTC	1 cut(s)	668
AspS9I	GGNCC	5 cut(s)	238, 251, 287, 530, 854
AsuC2I	CCSGG	2 cut(s)	893, 894
AsuHPI	GGTGA	4 cut(s)	344, 802, 847, 878
AvaI	CYCGRG	2 cut(s)	892, 1115
AvaII	GGWCC	5 cut(s)	238, 251, 287, 530, 854
BauI	CACGAG	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	1116
BbvI	GCAGC	1 cut(s)	1023
BccI	CCATC	7 cut(s)	302, 318, 322, 339, 632, 856, 1045
BcgI	CGANNNNNNTGC	2 cut(s)	1018, 1052
BciT130I	CCWGG	1 cut(s)	1106
BcnI	CCSGG	2 cut(s)	893, 894
BcoDI	GTCTC	3 cut(s)	186, 344, 473
BfaI	CTAG	1 cut(s)	189
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	1 cut(s)	1037
BlsI	GCNGC	1 cut(s)	1038
BmcAI	AGTACT	1 cut(s)	842
Bme1390I	CCNGG	3 cut(s)	893, 894, 1106
Bme18I	GGWCC	5 cut(s)	238, 251, 287, 530, 854
BmeT110I	CYCGRG	2 cut(s)	892, 1115
BmgT120I	GGNCC	5 cut(s)	238, 251, 287, 530, 854
BmiI	GGNNCC	2 cut(s)	622, 855
BmrFI	CCNGG	3 cut(s)	893, 894, 1106
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	1014
BmuI	ACTGGG	1 cut(s)	218
BpmI	CTGGAG	4 cut(s)	248, 770, 869, 1127
BpuMI	CCSGG	2 cut(s)	893, 894
BsaJI	CCNNGG	2 cut(s)	892, 992
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 296, 539, 863
Bse118I	RCCGGY	1 cut(s)	964
Bse1I	ACTGG	4 cut(s)	213, 231, 687, 848
Bse3DI	GCAATG	3 cut(s)	66, 431, 1173
BseBI	CCWGG	1 cut(s)	1106
BseDI	CCNNGG	2 cut(s)	892, 992
BseGI	GGATG	5 cut(s)	49, 333, 350, 606, 1062
BseLI	CCNNNNNNNGG	4 cut(s)	122, 296, 539, 863
BseMI	GCAATG	3 cut(s)	66, 431, 1173
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	4 cut(s)	213, 231, 687, 848
BseRI	GAGGAG	1 cut(s)	794
BseXI	GCAGC	1 cut(s)	1023
BshFI	GGCC	3 cut(s)	15, 187, 454
BsiHKAI	GWGCWC	1 cut(s)	1116
BsiHKCI	CYCGRG	2 cut(s)	892, 1115
BsiSI	CCGG	2 cut(s)	893, 965
BslI	CCNNNNNNNGG	4 cut(s)	122, 296, 539, 863
BsmAI	GTCTC	3 cut(s)	186, 344, 473
BsnI	GGCC	3 cut(s)	15, 187, 454
BsoBI	CYCGRG	2 cut(s)	892, 1115
Bsp1286I	GDGCHC	1 cut(s)	1116
Bsp1407I	TGTACA	1 cut(s)	1065
Bsp143I	GATC	2 cut(s)	54, 886
BspANI	GGCC	3 cut(s)	15, 187, 454
BspCNI	CTCAG	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	622, 855
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	3 cut(s)	66, 431, 1173
BsrFI	RCCGGY	1 cut(s)	964
BsrGI	TGTACA	1 cut(s)	1065
BsrI	ACTGG	4 cut(s)	213, 231, 687, 848
BssAI	RCCGGY	1 cut(s)	964
BssECI	CCNNGG	2 cut(s)	892, 992
BssMI	GATC	2 cut(s)	54, 886
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	992
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	1106
Bst4CI	ACNGT	2 cut(s)	1072, 1159
Bst6I	CTCTTC	3 cut(s)	307, 812, 918
BstAUI	TGTACA	1 cut(s)	1065
BstC8I	GCNNGC	3 cut(s)	17, 185, 1041
BstDEI	CTNAG	3 cut(s)	200, 464, 710
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	5 cut(s)	49, 333, 350, 606, 1062
BstKTI	GATC	2 cut(s)	57, 889
BstMAI	GTCTC	3 cut(s)	186, 344, 473
BstMBI	GATC	2 cut(s)	54, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	430, 439
BstNI	CCWGG	1 cut(s)	1106
BstSCI	CCNGG	3 cut(s)	891, 892, 1104
BstV1I	GCAGC	1 cut(s)	1023
BstX2I	RGATCY	1 cut(s)	886
BstXI	CCANNNNNNTGG	2 cut(s)	248, 617
BstYI	RGATCY	1 cut(s)	886
BsuRI	GGCC	3 cut(s)	15, 187, 454
BtsCI	GGATG	5 cut(s)	49, 333, 350, 606, 1062
BtsIMutI	CAGTG	3 cut(s)	633, 1068, 1164
Cac8I	GCNNGC	3 cut(s)	17, 185, 1041
Cfr10I	RCCGGY	1 cut(s)	964
Cfr13I	GGNCC	5 cut(s)	238, 251, 287, 530, 854
Cfr9I	CCCGGG	1 cut(s)	892
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	4 cut(s)	24, 80, 841, 1066
CviAII	CATG	6 cut(s)	20, 109, 149, 175, 218, 566
CviQI	GTAC	4 cut(s)	24, 80, 841, 1066
DdeI	CTNAG	3 cut(s)	200, 464, 710
DpnI	GATC	2 cut(s)	56, 888
DpnII	GATC	2 cut(s)	54, 886
DraIII	CACNNNGTG	1 cut(s)	745
Eam1104I	CTCTTC	3 cut(s)	307, 812, 918
EarI	CTCTTC	3 cut(s)	307, 812, 918
Eco130I	CCWWGG	1 cut(s)	992
Eco147I	AGGCCT	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	5 cut(s)	238, 251, 287, 530, 854
Eco57I	CTGAAG	1 cut(s)	555
Eco88I	CYCGRG	2 cut(s)	892, 1115
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoRI	GAATTC	1 cut(s)	774
EcoRII	CCWGG	1 cut(s)	1104
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	1 cut(s)	992
ErhI	CCWWGG	1 cut(s)	992
FaeI	CATG	6 cut(s)	23, 112, 152, 178, 221, 569
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FatI	CATG	6 cut(s)	19, 108, 148, 174, 217, 565
FauNDI	CATATG	1 cut(s)	28
FblI	GTMKAC	2 cut(s)	205, 517
Fnu4HI	GCNGC	1 cut(s)	1037
FokI	GGATG	5 cut(s)	36, 340, 357, 593, 1069
Fsp4HI	GCNGC	1 cut(s)	1037
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	1037
GsuI	CTGGAG	4 cut(s)	248, 770, 869, 1127
HaeIII	GGCC	3 cut(s)	15, 187, 454
HapII	CCGG	2 cut(s)	893, 965
HgaI	GACGC	1 cut(s)	512
Hin1II	CATG	6 cut(s)	23, 112, 152, 178, 221, 569
HincII	GTYRAC	1 cut(s)	206
HindII	GTYRAC	1 cut(s)	206
HindIII	AAGCTT	2 cut(s)	387, 1142
HpaII	CCGG	2 cut(s)	893, 965
HphI	GGTGA	4 cut(s)	344, 802, 847, 878
Hpy166II	GTNNAC	4 cut(s)	206, 238, 518, 1068
Hpy188I	TCNGA	3 cut(s)	54, 344, 382
Hpy188III	TCNNGA	4 cut(s)	128, 254, 533, 1080
Hpy8I	GTNNAC	4 cut(s)	206, 238, 518, 1068
Hpy99I	CGWCG	1 cut(s)	1091
HpyAV	CCTTC	6 cut(s)	530, 566, 680, 696, 1088, 1126
HpyCH4III	ACNGT	2 cut(s)	1072, 1159
HpyCH4V	TGCA	4 cut(s)	500, 828, 944, 957
HpyF10VI	GCNNNNNNNGC	2 cut(s)	430, 439
HpyF3I	CTNAG	3 cut(s)	200, 464, 710
Hsp92II	CATG	6 cut(s)	23, 112, 152, 178, 221, 569
Kzo9I	GATC	2 cut(s)	54, 886
LmnI	GCTCC	2 cut(s)	163, 626
Lsp1109I	GCAGC	1 cut(s)	1023
LweI	GCATC	1 cut(s)	1014
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	56, 888
MboI	GATC	2 cut(s)	54, 886
MboII	GAAGA	6 cut(s)	19, 324, 619, 622, 799, 935
MfeI	CAATTG	2 cut(s)	823, 945
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	1 cut(s)	1116
MluCI	AATT	4 cut(s)	487, 774, 823, 945
MlyI	GAGTC	3 cut(s)	37, 121, 266
MroXI	GAANNNNTTC	1 cut(s)	668
MslI	CAYNNNNRTG	2 cut(s)	373, 615
MspI	CCGG	2 cut(s)	893, 965
MspR9I	CCNGG	3 cut(s)	893, 894, 1106
MunI	CAATTG	2 cut(s)	823, 945
MvaI	CCWGG	1 cut(s)	1106
MwoI	GCNNNNNNNGC	2 cut(s)	430, 439
NciI	CCSGG	2 cut(s)	893, 894
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	2 cut(s)	54, 886
NlaIII	CATG	6 cut(s)	23, 112, 152, 178, 221, 569
NlaIV	GGNNCC	2 cut(s)	622, 855
PaeR7I	CTCGAG	1 cut(s)	1115
PceI	AGGCCT	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	7 cut(s)	32, 407, 664, 692, 897, 1083, 1204
PflFI	GACNNNGTC	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	1104
PkrI	GCNGC	1 cut(s)	1038
PleI	GAGTC	3 cut(s)	37, 120, 265
PpsI	GAGTC	3 cut(s)	37, 120, 265
Psp6I	CCWGG	1 cut(s)	1104
PspGI	CCWGG	1 cut(s)	1104
PspN4I	GGNNCC	2 cut(s)	622, 855
PspPI	GGNCC	5 cut(s)	238, 251, 287, 530, 854
PspXI	VCTCGAGB	1 cut(s)	1115
PsuI	RGATCY	1 cut(s)	886
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	4 cut(s)	25, 81, 842, 1067
RsaNI	GTAC	4 cut(s)	24, 80, 841, 1066
RseI	CAYNNNNRTG	2 cut(s)	373, 615
SalI	GTCGAC	1 cut(s)	204
SatI	GCNGC	1 cut(s)	1037
Sau3AI	GATC	2 cut(s)	54, 886
Sau96I	GGNCC	5 cut(s)	238, 251, 287, 530, 854
ScaI	AGTACT	1 cut(s)	842
SchI	GAGTC	3 cut(s)	37, 121, 266
ScrFI	CCNGG	3 cut(s)	893, 894, 1106
SduI	GDGCHC	1 cut(s)	1116
SfaNI	GCATC	1 cut(s)	1014
Sfr274I	CTCGAG	1 cut(s)	1115
SinI	GGWCC	5 cut(s)	238, 251, 287, 530, 854
SlaI	CTCGAG	1 cut(s)	1115
SmaI	CCCGGG	1 cut(s)	894
SmiMI	CAYNNNNRTG	2 cut(s)	373, 615
SmlI	CTYRAG	1 cut(s)	1115
SmoI	CTYRAG	1 cut(s)	1115
Sse9I	AATT	4 cut(s)	487, 774, 823, 945
SseBI	AGGCCT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	454
StyD4I	CCNGG	3 cut(s)	891, 892, 1104
StyI	CCWWGG	1 cut(s)	992
TaaI	ACNGT	2 cut(s)	1072, 1159
TaqI	TCGA	6 cut(s)	96, 205, 873, 1079, 1086, 1116
TasI	AATT	4 cut(s)	487, 774, 823, 945
TatI	WGTACW	3 cut(s)	79, 840, 1065
TfiI	GAWTC	7 cut(s)	32, 407, 664, 692, 897, 1083, 1204
TscAI	CASTG	3 cut(s)	640, 1075, 1164
TseI	GCWGC	1 cut(s)	1036
TspDTI	ATGAA	6 cut(s)	45, 76, 461, 936, 1046, 1154
TspMI	CCCGGG	1 cut(s)	892
TspRI	CASTG	3 cut(s)	640, 1075, 1164
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	5 cut(s)	238, 251, 287, 530, 854
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	2 cut(s)	487, 774
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XhoI	CTCGAG	1 cut(s)	1115
XmaI	CCCGGG	1 cut(s)	892
XmiI	GTMKAC	2 cut(s)	205, 517
XmnI	GAANNNNTTC	1 cut(s)	668
XspI	CTAG	1 cut(s)	189
ZrmI	AGTACT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.