FvH4_2g10610

Strictosidine synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
9387106 .. 9389242
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10610.t1

Sequence Viewer

Length: 1293 bp
ATGCATCGAAAACTTAAGTCTATCAAACTCTCTCTCCCTCTTCCCTTTCGATCTCTCTTTAACATGGAGAAAAGGAAGCTGAAAGAAAAAGATGAAGCATTATTGTTGCAGCACCCTGTTGTGCTTTTCCTTATTCTGGTCTTGGGCTTTGTTATAATGGATCCTCTACAGATAGGCCCGCTCGGCGGCCATGAATTCAAGCCCGTTAAGCATAGCATTGCACCGTACAACAAAGTCATGGAGAGGTGGCCGAAGGACAATCTGAGCCGGTTGGGACTAGGAAAGTTGGAGTTCGAGGACGAAGTTTTTGGGCCTGAATCTTTAGAGTTTGATGCTTTGGGCCGTGGACCTTACACCGGATTAGCCGATGGACGCGTTGTGAGATGGATGGGCCCGGATGTGGGTTGGGAGACGTTTGCGCTTGTTACAGCAAATTGGTCAGAGCAGGTTTGTGCAAAAGGCAATGAGTCCACCACATACAAGCAATGGAAGCATGAAAAAAGGTGTGGCCGTCCACTTGGGTTAAGATTTGACAAAGTGACTGGAAATCTGTACATTGCGGACGCTTATTATGGACTTCTAGTAGTTGGACCTGAAGGAGGACTTGCAACTCCTTTGTCAAGTCAAGATGTAGAGGGCAACCCCATACTCTTTGCAAATGACCTTGACATCCACACCAATGGTTCCGTCTTCTTTACAGATACTAGCAAGAGATACAACAGAGTGGATCATTTCCTTATACTATTGGAAGGAGAATCCACTGGTAGGCTTCTGAGATATGACCCTCCCACTAAAACAACTTATGTTGTCTTGGATGGTTTGGCCTTTCCAAATGGCGTACAGCTCTCTCAGGACCAAACCTTCCTTCTCTTCACTGAGACCACCAACTGCAGGCTCACGAAATACTGGCTAGAAGGTCCAAAATCTGGAACAGTGGAACTTGTTGCGGACCTTCCAGGATTTCCAGACAATGTAAGAATGAATGAGAAAGGGCAATTCTGGGTAGCAATTGACTGTTGCAGGACTCCAGCACAGGAGATCCTCTCTCATAATCCATGGTTAAGAAGCGTCTACTTTCGCTTGCCAATCCGGATGAACTACTTGGCAAGACTTATGGGTATGAAAATGTACACACTGATCTCGCTATTCGACGACAAGGGAGAAATTTTGGAAGTTCTTGAGGACCGAAAGGGTGAGGTTATGAAACTTGTGAGTGAAGTTAGAGAATCAAAGGGCAAACTCTGGATTGGAACTGTGGCTCATAACCACATTGCTACCATCCCTTACCCTTAA

Protein Analysis

431

Amino Acids

48.82

Weight (kDa)

7.15

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGL PF08450 156 - 337 1.7e-15 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 220 - 306 1.1e-29 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59530 AT3G59530 AT3G59530
fragaria_vesca FvH4_2g10610
malus_domestica MD04G1040000.v1.1
prunus_persica Prupe.1G192200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0268261
rosa_laevigata RLG00000013923
rosa_multiflora Rmu_sc0007606.1_g000010 Rmu_sc0010202.1_g000005
rosa_roxburghii Rroxscaffold_7G00199930
rosa_rugosa Rorug06G0040300
rosa_samantha Rh6CG154000 Rh6DG150000
rosa_wichuraiana Rw6G013850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 926
AccBSI CCGCTC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 1071
AccII CGCG 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 1089
AciI CCGC 4 cut(s) 179, 186, 560, 947
AclWI GGATC 4 cut(s) 155, 168, 735, 1033
AcoI YGGCCR 3 cut(s) 187, 248, 508
AcsI RAATTY 2 cut(s) 194, 1164
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 4 cut(s) 227, 554, 840, 1130
AfiI CCNNNNNNNGG 9 cut(s) 136, 185, 356, 400, 401, 599, 765, 891, 926
AflII CTTAAG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 955
AjuI GAANNNNNNNTTGG 2 cut(s) 849, 881
AluBI AGCT 2 cut(s) 79, 844
AluI AGCT 2 cut(s) 79, 844
Alw26I GTCTC 2 cut(s) 404, 872
AlwI GGATC 4 cut(s) 155, 168, 735, 1033
Aor13HI TCCGGA 1 cut(s) 1089
AoxI GGCC 8 cut(s) 175, 187, 248, 311, 340, 391, 508, 822
ApaI GGGCCC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 2 cut(s) 194, 1164
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 1 cut(s) 421
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 1205
AvaII GGWCC 6 cut(s) 347, 590, 853, 917, 949, 1183
BaeGI GKGCMC 1 cut(s) 395
BamHI GGATCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 682
BbvI GCAGC 1 cut(s) 121
BccI CCATC 5 cut(s) 362, 378, 382, 809, 1286
BceAI ACGGC 2 cut(s) 327, 495
BciT130I CCWGG 1 cut(s) 957
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 404, 872
BfaI CTAG 4 cut(s) 278, 581, 705, 911
BfmI CTRYAG 2 cut(s) 167, 889
BfrI CTTAAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 2 cut(s) 110, 187
BlsI GCNGC 2 cut(s) 111, 188
Bme1390I CCNGG 2 cut(s) 395, 957
Bme18I GGWCC 6 cut(s) 347, 590, 853, 917, 949, 1183
BmiI GGNNCC 3 cut(s) 162, 393, 685
BmrFI CCNGG 2 cut(s) 395, 957
BmsI GCATC 2 cut(s) 13, 322
BpiI GAAGAC 1 cut(s) 682
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
BpmI CTGGAG 1 cut(s) 1011
BpuEI CTTGAG 1 cut(s) 1199
BpuMI CCSGG 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 343, 1055
BsaWI WCCGGW 2 cut(s) 356, 1089
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 9 cut(s) 136, 185, 356, 400, 401, 599, 765, 891, 926
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 3 cut(s) 547, 766, 911
Bse3DI GCAATG 5 cut(s) 216, 469, 491, 555, 1269
BseAI TCCGGA 1 cut(s) 1089
BseBI CCWGG 1 cut(s) 957
BseDI CCNNGG 2 cut(s) 343, 1055
BseGI GGATG 6 cut(s) 393, 403, 669, 820, 1098, 1278
BseLI CCNNNNNNNGG 9 cut(s) 136, 185, 356, 400, 401, 599, 765, 891, 926
BseMI GCAATG 5 cut(s) 216, 469, 491, 555, 1269
BseMII CTCAG 4 cut(s) 254, 764, 863, 867
BseNI ACTGG 3 cut(s) 547, 766, 911
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 8 cut(s) 177, 189, 250, 313, 342, 393, 510, 824
BsiSI CCGG 4 cut(s) 268, 357, 395, 1090
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 9 cut(s) 136, 185, 356, 400, 401, 599, 765, 891, 926
BsmAI GTCTC 2 cut(s) 404, 872
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 8 cut(s) 177, 189, 250, 313, 342, 393, 510, 824
Bso31I GGTCTC 1 cut(s) 872
Bsp120I GGGCCC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 395
Bsp13I TCCGGA 1 cut(s) 1089
Bsp1407I TGTACA 2 cut(s) 552, 1128
Bsp143I GATC 5 cut(s) 50, 160, 727, 1038, 1137
Bsp19I CCATGG 1 cut(s) 1055
BspACI CCGC 4 cut(s) 179, 186, 560, 947
BspANI GGCC 8 cut(s) 177, 189, 250, 313, 342, 393, 510, 824
BspCNI CTCAG 4 cut(s) 255, 765, 862, 868
BspEI TCCGGA 1 cut(s) 1089
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 162, 393, 685
BspMAI CTGCAG 1 cut(s) 893
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 4 cut(s) 155, 168, 735, 1033
BspTI CTTAAG 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 872
BsrBI CCGCTC 1 cut(s) 181
BsrDI GCAATG 5 cut(s) 216, 469, 491, 555, 1269
BsrFI RCCGGY 1 cut(s) 267
BsrGI TGTACA 2 cut(s) 552, 1128
BsrI ACTGG 3 cut(s) 547, 766, 911
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 343, 1055
BssMI GATC 5 cut(s) 50, 160, 727, 1038, 1137
BssT1I CCWWGG 1 cut(s) 1055
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 4 cut(s) 225, 934, 1016, 1255
Bst6I CTCTTC 2 cut(s) 45, 875
BstAFI CTTAAG 1 cut(s) 14
BstAUI TGTACA 2 cut(s) 552, 1128
BstC8I GCNNGC 3 cut(s) 179, 893, 1082
BstDEI CTNAG 4 cut(s) 263, 773, 849, 876
BstDSI CCRYGG 2 cut(s) 343, 1055
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 6 cut(s) 393, 403, 669, 820, 1098, 1278
BstFNI CGCG 1 cut(s) 375
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 5 cut(s) 53, 163, 730, 1041, 1140
BstMAI GTCTC 2 cut(s) 404, 872
BstMBI GATC 5 cut(s) 50, 160, 727, 1038, 1137
BstMWI GCNNNNNNNGC 3 cut(s) 183, 208, 490
BstNI CCWGG 1 cut(s) 957
BstSCI CCNGG 2 cut(s) 393, 955
BstSFI CTRYAG 2 cut(s) 167, 889
BstSLI GKGCMC 1 cut(s) 395
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 682
BstX2I RGATCY 2 cut(s) 160, 1038
BstXI CCANNNNNNTGG 1 cut(s) 680
BstYI RGATCY 2 cut(s) 160, 1038
BsuRI GGCC 8 cut(s) 177, 189, 250, 313, 342, 393, 510, 824
BtgI CCRYGG 2 cut(s) 343, 1055
BtsCI GGATG 6 cut(s) 393, 403, 669, 820, 1098, 1278
BtsIMutI CAGTG 4 cut(s) 759, 873, 939, 1133
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 179, 893, 1082
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 267
CseI GACGC 3 cut(s) 381, 572, 1057
Csp6I GTAC 4 cut(s) 226, 553, 839, 1129
CviAII CATG 5 cut(s) 64, 191, 238, 494, 1056
CviQI GTAC 4 cut(s) 226, 553, 839, 1129
DdeI CTNAG 4 cut(s) 263, 773, 849, 876
DpnI GATC 5 cut(s) 52, 162, 729, 1040, 1139
DpnII GATC 5 cut(s) 50, 160, 727, 1038, 1137
EaeI YGGCCR 3 cut(s) 187, 248, 508
Eam1104I CTCTTC 2 cut(s) 45, 875
EarI CTCTTC 2 cut(s) 45, 875
Eco130I CCWWGG 1 cut(s) 1055
Eco24I GRGCYC 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 872
Eco47I GGWCC 6 cut(s) 347, 590, 853, 917, 949, 1183
Eco57I CTGAAG 1 cut(s) 615
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 955
EcoT14I CCWWGG 1 cut(s) 1055
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 1055
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 5 cut(s) 67, 194, 241, 497, 1059
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 1 cut(s) 288
FatI CATG 5 cut(s) 63, 190, 237, 493, 1055
FauI CCCGC 1 cut(s) 186
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 2 cut(s) 110, 187
FokI GGATG 6 cut(s) 400, 410, 656, 827, 1105, 1265
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 2 cut(s) 110, 187
FspBI CTAG 4 cut(s) 278, 581, 705, 911
GlaI GCGC 1 cut(s) 420
GluI GCNGC 2 cut(s) 110, 187
GsuI CTGGAG 1 cut(s) 1011
HaeIII GGCC 8 cut(s) 177, 189, 250, 313, 342, 393, 510, 824
HapII CCGG 4 cut(s) 268, 357, 395, 1090
HgaI GACGC 3 cut(s) 381, 572, 1057
HhaI GCGC 1 cut(s) 421
Hin1II CATG 5 cut(s) 67, 194, 241, 497, 1059
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 5 cut(s) 317, 467, 755, 1024, 1226
HpaII CCGG 4 cut(s) 268, 357, 395, 1090
HphI GGTGA 1 cut(s) 1205
Hpy166II GTNNAC 5 cut(s) 347, 471, 515, 1072, 1131
Hpy188I TCNGA 3 cut(s) 264, 442, 774
Hpy188III TCNNGA 8 cut(s) 626, 851, 898, 927, 965, 1090, 1178, 1243
Hpy8I GTNNAC 5 cut(s) 347, 471, 515, 1072, 1131
Hpy99I CGWCG 1 cut(s) 1154
HpyAV CCTTC 7 cut(s) 247, 590, 743, 871, 875, 908, 962
HpyCH4III ACNGT 4 cut(s) 225, 934, 1016, 1255
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 8 cut(s) 4, 109, 221, 455, 608, 656, 891, 1020
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 208, 490
HpyF3I CTNAG 4 cut(s) 263, 773, 849, 876
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 5 cut(s) 67, 194, 241, 497, 1059
HspAI GCGC 1 cut(s) 419
Kpn2I TCCGGA 1 cut(s) 1089
Kzo9I GATC 5 cut(s) 50, 160, 727, 1038, 1137
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 2 cut(s) 13, 322
MaeI CTAG 4 cut(s) 278, 581, 705, 911
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 2 cut(s) 424, 538
MalI GATC 5 cut(s) 52, 162, 729, 1040, 1139
MbiI CCGCTC 1 cut(s) 181
MboI GATC 5 cut(s) 50, 160, 727, 1038, 1137
MboII GAAGA 3 cut(s) 32, 682, 862
MfeI CAATTG 1 cut(s) 1008
MflI RGATCY 2 cut(s) 160, 1038
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 5 cut(s) 194, 433, 995, 1008, 1164
MluI ACGCGT 1 cut(s) 373
MlyI GAGTC 2 cut(s) 476, 1018
MmeI TCCRAC 2 cut(s) 267, 568
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 1089
MseI TTAA 6 cut(s) 15, 60, 207, 524, 1061, 1291
MslI CAYNNNNRTG 1 cut(s) 678
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 4 cut(s) 268, 357, 395, 1090
MspR9I CCNGG 2 cut(s) 395, 957
MunI CAATTG 1 cut(s) 1008
MvaI CCWGG 1 cut(s) 957
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 183, 208, 490
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 1055
NdeII GATC 5 cut(s) 50, 160, 727, 1038, 1137
NlaIII CATG 5 cut(s) 67, 194, 241, 497, 1059
NlaIV GGNNCC 3 cut(s) 162, 393, 685
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 538
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 3 cut(s) 317, 755, 1226
PflMI CCANNNNNTGG 1 cut(s) 926
PfoI TCCNGGA 1 cut(s) 955
PkrI GCNGC 2 cut(s) 111, 188
PleI GAGTC 2 cut(s) 475, 1018
PpsI GAGTC 2 cut(s) 475, 1018
PsiI TTATAA 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 955
PspGI CCWGG 1 cut(s) 955
PspN4I GGNNCC 3 cut(s) 162, 393, 685
PspOMI GGGCCC 1 cut(s) 391
PstI CTGCAG 1 cut(s) 893
PsuI RGATCY 2 cut(s) 160, 1038
RsaI GTAC 4 cut(s) 227, 554, 840, 1130
RsaNI GTAC 4 cut(s) 226, 553, 839, 1129
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 6 cut(s) 15, 60, 207, 524, 1061, 1291
SatI GCNGC 2 cut(s) 110, 187
Sau3AI GATC 5 cut(s) 50, 160, 727, 1038, 1137
SchI GAGTC 2 cut(s) 476, 1018
ScrFI CCNGG 2 cut(s) 395, 957
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 2 cut(s) 13, 322
SfcI CTRYAG 2 cut(s) 167, 889
SinI GGWCC 6 cut(s) 347, 590, 853, 917, 949, 1183
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 2 cut(s) 14, 1178
SmoI CTYRAG 2 cut(s) 14, 1178
Sse9I AATT 5 cut(s) 194, 433, 995, 1008, 1164
SsiI CCGC 4 cut(s) 179, 186, 560, 947
SspMI CTAG 4 cut(s) 278, 581, 705, 911
StyD4I CCNGG 2 cut(s) 393, 955
StyI CCWWGG 1 cut(s) 1055
TaaI ACNGT 4 cut(s) 225, 934, 1016, 1255
TaiI ACGT 1 cut(s) 416
TaqI TCGA 4 cut(s) 7, 49, 294, 1149
TaqII GACCGA 1 cut(s) 1200
TasI AATT 5 cut(s) 194, 433, 995, 1008, 1164
TatI WGTACW 2 cut(s) 552, 1128
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 3 cut(s) 317, 755, 1226
Tru1I TTAA 6 cut(s) 15, 60, 207, 524, 1061, 1291
Tru9I TTAA 6 cut(s) 15, 60, 207, 524, 1061, 1291
TscAI CASTG 4 cut(s) 766, 880, 939, 1140
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 7 cut(s) 108, 207, 510, 995, 1109, 1136, 1217
TspGWI ACGGA 1 cut(s) 676
TspRI CASTG 4 cut(s) 766, 880, 939, 1140
Van91I CCANNNNNTGG 1 cut(s) 926
Vha464I CTTAAG 1 cut(s) 14
VpaK11BI GGWCC 6 cut(s) 347, 590, 853, 917, 949, 1183
XagI CCTNNNNNAGG 1 cut(s) 597
XapI RAATTY 2 cut(s) 194, 1164
XmiI GTMKAC 1 cut(s) 1071
XspI CTAG 4 cut(s) 278, 581, 705, 911
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.