Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015982

Physical Location & Seq

Genomic Coordinates Reverse (-)

4689845 .. 4692383

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1040000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGAAGAAGAAACTGCTTTTGCTCAGAGATGAAGCATTACTGCAGCACCCAGTTCTCCTTCTTCTTGTTCTGGTTTTAGGGTTTGTCATGATGGACCCACTGCAAATGGGTCCACTTGGGAACCACGAGTTTAAGCCTGTGAAGCACAGCATTGCGCCGTACAAGCAAGTCATGGAGAGGTGGCCGAGGGATAATGAGAGCAGGTTAGGGCTTGGGAAGCTGGAGTTTGAAGATCAAGTTTTTGGTCCCGAGTCGTTGGAGTTTGATGCTTTGGGTCGAGGTCCGTACACAGGGTTAGCCGATGGACGCGTTGTTAGATGGATGGGCAAGGATTTGGGATGGGAAACGTTTGCACTTGTAACAACAAATTGGTCAGAGAAGGTTTGTGCTAAAGGCATAGACTCAACCACGCATAAGCAATGGAAGCACGAGAAAAAGTGTGGTCGTCCCCTTGGCCTAAGGTTTGACAAAGAGAGTGGAGATTTGTACATTGCTGATGCATATTATGGCCTTCTAGTTGTTGGCCCTGAAGGAGGAATTGCCTCTACTTTGTCAACTCATGTGGAAGGGAAGCCTATACTTTTTGCAAATGACCTTGACATCCACAAGAATGGCTCTATTTTCTTCACAGACACAAGCAAGAGATACAACCGAGTGGATCATTTCGTTATTCTATTGGAAGGGGAATCCACTGGTAGGCTTCTGAGATATGACCCTCCTACTAAAACAACTCACATTGTCTTGGATGGTTTGGCTTTTCCAAATGGAATTCAACTTTCACAGGACCAAACATTTCTTCTCTTTACTGAGACCACCAACTGCAGGTTAATGAAATATTGGCTAGAGGGTCCAAAAACTGGGACAGTGGAAATTGTTGCCAACCTTCCAGGTTTTCCAGACAATATAAGAATAAATGAGAAAGGCCAGTTCTGGGTAGCAATAGACTGTTGCAGGACTCAAGCACAAGAGGTTCTCTCTCATAATCCATGGATACGTAGCGTCTACTTTCGCTTGCCCATCCGAATGACCTACTTGGCACGGATTATGGGGATGAAGATGTACACAATGATCTCACTGTTCGACGAGAAGGGAGAAATTTTGGAAGTTCTTGAGGACAGAAAGGGTGTGGTCATGAAACTTGTGAGTGAAGTTAGGGAAGCAAAAGGCAAACTGTGGATTGGAACTGTGGCTCATAATCACATTGCCACCCTCACTTACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0016788 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

409

Amino Acids

46.4

Weight (kDa)

7.2

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	135 - 315	5.4e-18	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	198 - 284	6.8e-30	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59530 AT3G59530 AT3G59530
fragaria_vesca	FvH4_2g10610
malus_domestica	MD04G1040000.v1.1
prunus_persica	Prupe.1G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268261
rosa_laevigata	RLG00000013923
rosa_multiflora	Rmu_sc0007606.1_g000010 Rmu_sc0010202.1_g000005
rosa_roxburghii	Rroxscaffold_7G00199930
rosa_rugosa	Rorug06G0040300
rosa_samantha	Rh6CG154000 Rh6DG150000
rosa_wichuraiana	Rw6G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	195, 816
AccB7I	CCANNNNNTGG	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	1005
AccII	CGCG	1 cut(s)	312
AclI	AACGTT	1 cut(s)	350
AclWI	GGATC	1 cut(s)	669
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	771, 1098
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	4 cut(s)	164, 290, 491, 1064
AfiI	CCNNNNNNNGG	6 cut(s)	293, 536, 699, 825, 860, 934
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	233, 776
AjnI	CCWGG	1 cut(s)	889
AjuI	GAANNNNNNNTTGG	2 cut(s)	783, 815
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	806
AlwI	GGATC	1 cut(s)	669
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	5 cut(s)	185, 457, 511, 526, 925
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	771, 1098
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	7 cut(s)	97, 113, 248, 284, 527, 787, 851
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	6 cut(s)	97, 113, 248, 284, 787, 851
AxyI	CCTNAGG	1 cut(s)	461
BauI	CACGAG	2 cut(s)	128, 431
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	7 cut(s)	88, 299, 315, 319, 336, 743, 1028
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	891
BciVI	GTATCC	1 cut(s)	987
BcoDI	GTCTC	1 cut(s)	806
BfaI	CTAG	2 cut(s)	518, 845
BfmI	CTRYAG	2 cut(s)	44, 823
BfuAI	ACCTGC	2 cut(s)	195, 816
BfuI	GTATCC	1 cut(s)	987
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	891
Bme18I	GGWCC	6 cut(s)	97, 113, 248, 284, 787, 851
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	7 cut(s)	97, 113, 248, 284, 527, 787, 851
BmiI	GGNNCC	5 cut(s)	99, 114, 125, 250, 852
BmrFI	CCNGG	1 cut(s)	891
BmrI	ACTGGG	2 cut(s)	47, 870
BmsI	GCATC	2 cut(s)	259, 490
BmuI	ACTGGG	2 cut(s)	47, 870
BplI	GAGNNNNNCTC	2 cut(s)	962, 994
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	945, 1133
BsaAI	YACGTR	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	188, 454, 989
Bsc4I	CCNNNNNNNGG	6 cut(s)	293, 536, 699, 825, 860, 934
Bse1I	ACTGG	4 cut(s)	53, 700, 865, 928
Bse21I	CCTNAGG	1 cut(s)	461
Bse3DI	GCAATG	4 cut(s)	153, 428, 492, 1203
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	3 cut(s)	188, 454, 989
BseGI	GGATG	6 cut(s)	330, 347, 603, 754, 1020, 1059
BseLI	CCNNNNNNNGG	6 cut(s)	293, 536, 699, 825, 860, 934
BseMI	GCAATG	4 cut(s)	153, 428, 492, 1203
BseMII	CTCAG	3 cut(s)	40, 698, 801
BseNI	ACTGG	4 cut(s)	53, 700, 865, 928
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	5 cut(s)	187, 459, 513, 528, 927
BsiHKCI	CYCGRG	1 cut(s)	251
BslFI	GGGAC	3 cut(s)	234, 435, 877
BslI	CCNNNNNNNGG	6 cut(s)	293, 536, 699, 825, 860, 934
BsmAI	GTCTC	1 cut(s)	806
BsmFI	GGGAC	3 cut(s)	234, 435, 877
BsnI	GGCC	5 cut(s)	187, 459, 513, 528, 927
Bso31I	GGTCTC	1 cut(s)	806
BsoBI	CYCGRG	1 cut(s)	251
Bsp1407I	TGTACA	2 cut(s)	489, 1062
Bsp143I	GATC	3 cut(s)	235, 661, 1071
Bsp19I	CCATGG	1 cut(s)	989
BspANI	GGCC	5 cut(s)	187, 459, 513, 528, 927
BspCNI	CTCAG	3 cut(s)	39, 699, 802
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	2 cut(s)	90, 1134
BspLI	GGNNCC	5 cut(s)	99, 114, 125, 250, 852
BspMAI	CTGCAG	2 cut(s)	48, 827
BspMI	ACCTGC	2 cut(s)	195, 816
BspPI	GGATC	1 cut(s)	669
BspTNI	GGTCTC	1 cut(s)	806
BsrDI	GCAATG	4 cut(s)	153, 428, 492, 1203
BsrGI	TGTACA	2 cut(s)	489, 1062
BsrI	ACTGG	4 cut(s)	53, 700, 865, 928
BssECI	CCNNGG	3 cut(s)	188, 454, 989
BssMI	GATC	3 cut(s)	235, 661, 1071
BssSI	CACGAG	2 cut(s)	128, 431
BssT1I	CCWWGG	2 cut(s)	454, 989
Bst2BI	CACGAG	2 cut(s)	128, 431
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	5 cut(s)	868, 950, 1080, 1176, 1189
BstAUI	TGTACA	2 cut(s)	489, 1062
BstBAI	YACGTR	1 cut(s)	998
BstC8I	GCNNGC	1 cut(s)	1016
BstDEI	CTNAG	4 cut(s)	26, 461, 707, 810
BstDSI	CCRYGG	1 cut(s)	989
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	6 cut(s)	330, 347, 603, 754, 1020, 1059
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	238, 664, 1074
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	3 cut(s)	235, 661, 1071
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 166, 220, 427
BstNI	CCWGG	1 cut(s)	891
BstSCI	CCNGG	1 cut(s)	889
BstSFI	CTRYAG	2 cut(s)	44, 823
BstSNI	TACGTA	1 cut(s)	998
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	614
Bsu36I	CCTNAGG	1 cut(s)	461
BsuI	GTATCC	1 cut(s)	987
BsuRI	GGCC	5 cut(s)	187, 459, 513, 528, 927
BtgI	CCRYGG	1 cut(s)	989
BtsCI	GGATG	6 cut(s)	330, 347, 603, 754, 1020, 1059
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	4 cut(s)	101, 693, 873, 1076
BveI	ACCTGC	2 cut(s)	195, 816
Cac8I	GCNNGC	1 cut(s)	1016
CciI	TCATGA	2 cut(s)	90, 1134
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	7 cut(s)	97, 113, 248, 284, 527, 787, 851
CseI	GACGC	2 cut(s)	318, 991
Csp6I	GTAC	4 cut(s)	163, 289, 490, 1063
CspCI	CAANNNNNGTGG	4 cut(s)	460, 495, 546, 581
CviAII	CATG	5 cut(s)	91, 175, 563, 990, 1135
CviQI	GTAC	4 cut(s)	163, 289, 490, 1063
DdeI	CTNAG	4 cut(s)	26, 461, 707, 810
DpnI	GATC	3 cut(s)	237, 663, 1073
DpnII	GATC	3 cut(s)	235, 661, 1071
EaeI	YGGCCR	1 cut(s)	185
Eco105I	TACGTA	1 cut(s)	998
Eco130I	CCWWGG	2 cut(s)	454, 989
Eco31I	GGTCTC	1 cut(s)	806
Eco47I	GGWCC	6 cut(s)	97, 113, 248, 284, 787, 851
Eco57I	CTGAAG	1 cut(s)	552
Eco81I	CCTNAGG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	771
EcoRII	CCWGG	1 cut(s)	889
EcoT14I	CCWWGG	2 cut(s)	454, 989
EcoT22I	ATGCAT	1 cut(s)	505
ErhI	CCWWGG	2 cut(s)	454, 989
FaeI	CATG	5 cut(s)	94, 178, 566, 993, 1138
FaqI	GGGAC	3 cut(s)	234, 435, 877
FatI	CATG	5 cut(s)	90, 174, 562, 989, 1134
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	6 cut(s)	337, 354, 590, 761, 1007, 1066
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	2 cut(s)	518, 845
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	5 cut(s)	187, 459, 513, 528, 927
HgaI	GACGC	2 cut(s)	318, 991
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	5 cut(s)	94, 178, 566, 993, 1138
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HinfI	GANTC	4 cut(s)	254, 404, 689, 958
Hpy166II	GTNNAC	5 cut(s)	116, 291, 558, 1006, 1065
Hpy188I	TCNGA	4 cut(s)	29, 379, 708, 1025
Hpy188III	TCNNGA	5 cut(s)	91, 251, 899, 1112, 1135
Hpy8I	GTNNAC	5 cut(s)	116, 291, 558, 1006, 1065
Hpy99I	CGWCG	1 cut(s)	1088
HpyAV	CCTTC	8 cut(s)	71, 376, 524, 527, 563, 677, 896, 1084
HpyCH4III	ACNGT	5 cut(s)	868, 950, 1080, 1176, 1189
HpyCH4IV	ACGT	2 cut(s)	350, 997
HpyCH4V	TGCA	7 cut(s)	46, 106, 356, 503, 590, 825, 954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 166, 220, 427
HpyF3I	CTNAG	4 cut(s)	26, 461, 707, 810
HpySE526I	ACGT	2 cut(s)	350, 997
Hsp92II	CATG	5 cut(s)	94, 178, 566, 993, 1138
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	235, 661, 1071
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	259, 490
MaeI	CTAG	2 cut(s)	518, 845
MaeII	ACGT	2 cut(s)	350, 997
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	237, 663, 1073
MboI	GATC	3 cut(s)	235, 661, 1071
MboII	GAAGA	7 cut(s)	19, 22, 56, 245, 619, 791, 1069
MluCI	AATT	5 cut(s)	370, 540, 771, 873, 1098
MluI	ACGCGT	1 cut(s)	310
MlyI	GAGTC	3 cut(s)	263, 398, 952
MmeI	TCCRAC	1 cut(s)	240
Mph1103I	ATGCAT	1 cut(s)	505
MseI	TTAA	3 cut(s)	135, 830, 1225
MslI	CAYNNNNRTG	2 cut(s)	612, 1025
MspR9I	CCNGG	1 cut(s)	891
MvaI	CCWGG	1 cut(s)	891
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	145, 166, 220, 427
NcoI	CCATGG	1 cut(s)	989
NdeII	GATC	3 cut(s)	235, 661, 1071
NlaIII	CATG	5 cut(s)	94, 178, 566, 993, 1138
NlaIV	GGNNCC	5 cut(s)	99, 114, 125, 250, 852
NmeAIII	GCCGAG	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	505
PagI	TCATGA	2 cut(s)	90, 1134
PfeI	GAWTC	1 cut(s)	689
PflMI	CCANNNNNTGG	1 cut(s)	860
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	3 cut(s)	262, 398, 952
PpsI	GAGTC	3 cut(s)	262, 398, 952
Ppu21I	YACGTR	1 cut(s)	998
Psp1406I	AACGTT	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	5 cut(s)	99, 114, 125, 250, 852
PspPI	GGNCC	7 cut(s)	97, 113, 248, 284, 527, 787, 851
PstI	CTGCAG	2 cut(s)	48, 827
RsaI	GTAC	4 cut(s)	164, 290, 491, 1064
RsaNI	GTAC	4 cut(s)	163, 289, 490, 1063
RseI	CAYNNNNRTG	2 cut(s)	612, 1025
SaqAI	TTAA	3 cut(s)	135, 830, 1225
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	235, 661, 1071
Sau96I	GGNCC	7 cut(s)	97, 113, 248, 284, 527, 787, 851
SchI	GAGTC	3 cut(s)	263, 398, 952
ScrFI	CCNGG	1 cut(s)	891
SfaNI	GCATC	2 cut(s)	259, 490
SfcI	CTRYAG	2 cut(s)	44, 823
SinI	GGWCC	6 cut(s)	97, 113, 248, 284, 787, 851
SmiMI	CAYNNNNRTG	2 cut(s)	612, 1025
SmlI	CTYRAG	2 cut(s)	960, 1112
SmoI	CTYRAG	2 cut(s)	960, 1112
SnaBI	TACGTA	1 cut(s)	998
Sse9I	AATT	5 cut(s)	370, 540, 771, 873, 1098
SspI	AATATT	1 cut(s)	839
SspMI	CTAG	2 cut(s)	518, 845
StyD4I	CCNGG	1 cut(s)	889
StyI	CCWWGG	2 cut(s)	454, 989
TaaI	ACNGT	5 cut(s)	868, 950, 1080, 1176, 1189
TaiI	ACGT	2 cut(s)	353, 1000
TaqI	TCGA	2 cut(s)	280, 1083
TasI	AATT	5 cut(s)	370, 540, 771, 873, 1098
TatI	WGTACW	2 cut(s)	489, 1062
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	3 cut(s)	135, 830, 1225
Tru9I	TTAA	3 cut(s)	135, 830, 1225
TscAI	CASTG	4 cut(s)	108, 700, 873, 1083
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	48, 848, 1070, 1151
TspGWI	ACGGA	2 cut(s)	276, 1057
TspRI	CASTG	4 cut(s)	108, 700, 873, 1083
Van91I	CCANNNNNTGG	1 cut(s)	860
VpaK11BI	GGWCC	6 cut(s)	97, 113, 248, 284, 787, 851
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	2 cut(s)	771, 1098
XmiI	GTMKAC	1 cut(s)	1005
XspI	CTAG	2 cut(s)	518, 845
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.