Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015982

Physical Location & Seq

Genomic Coordinates Reverse (-)

17811786 .. 17814078

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G192200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGAAGAAAAAATTACTCTTGCTCAGAGATGAAGCATTGTTGCAGCACCCAATCTTCCTTCTCCTAGTTCTAGTTCTGGGGTTTGTTGTCATGGACCCACTGCAAATGGGCCCACTAGGAGACCATGAATTTAGGCCAGTGAAGCACAACATTGCACCATACAAGCAAGTCATGGAGAGGTGGCCGAGGGACAATGAGAGCAGGTTAGGGTTTGGGAAGTTGGAGTTTGAAGATGAAGTTTTTGGTCCTGAGTCTTTGGAGTTTGATGCTTTTGGTCGTGGCCCTTACACAGGGTTGGCTGATGGACGCATTGTTAGATGGATGGGCAACGATTTGGGCTGGGAAACGTTTGCACTTGTAACATCAAATTGGTCAAAGCAGGTTTGTGCTAAGGGCATTGACTCAACCACACACAAGCAATGGAAGCATGAGAAGAAGTGTGGCCGTCCACTTGGCCTGAGATTTGATAAAGAGAGTGGAGATTTGTACATTGCTGATGCCTATTATGGTCTTTTGGTTGTTGGCCCTCAAGGAGGCCTTGCCACTCCCCTGTCAACCCATGTGGAAGGGAAGCCTATTCTTTTTGCAAATGACCTTGATATCCACAAGAATGGCTCAATCTTCTTCACTGATACCAGCAAGAGATACAACAGAGTGAACCATTTCTTTATACTATTGGAAGGAGAATCCACTGGTAGGCTTCTGAGATATGATCCTCCTACTAAGACAACTCATATTGTCTTGGAAGGTTTGGCTTTTCCAAATGGGTTGCAGCTTTCTAAGGACCAAACCTTCCTCCTCTTTACTGAGACCACCAACTGCAGGCTAATGAAATATTGGCTAGAGGGTCCTAAAAATGGGACAGTGGAACTTGTTGCTAACCTTCCAGGTTTTCCAGACAACATAAGAATAAATGAGAAGGGCCAATTCTGGGTTGCCATAGATTGTTGCAGGACCCCAGCACAAGAAGTCCTCTCTCACAATCCATGGATACGGAGTGTCTACTTTCGCTTGCCGATCCGAATGACCTACTTAGCGCGATTTATGGGGATGAAGATGTACACATTGATCTCCCTCTTCAATGAGAAGGGGGAAATTTTGGAAGTTCTCGAGGATCAAAAGGGTGCCGTTATGAAACTTGTGAGTGAAGTTAGGGAAGCAAAGGGCAAACTGTGGATTGGAACTGTGGCTCATAATCACATTGCCACCCTTCCTTACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0016788 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

409

Amino Acids

46.53

Weight (kDa)

7.69

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59530 AT3G59530 AT3G59530
fragaria_vesca	FvH4_2g10610
malus_domestica	MD04G1040000.v1.1
prunus_persica	Prupe.1G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268261
rosa_laevigata	RLG00000013923
rosa_multiflora	Rmu_sc0007606.1_g000010 Rmu_sc0010202.1_g000005
rosa_roxburghii	Rroxscaffold_7G00199930
rosa_rugosa	Rorug06G0040300
rosa_samantha	Rh6CG154000 Rh6DG150000
rosa_wichuraiana	Rw6G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	195, 373
AccB1I	GGYRCC	1 cut(s)	1127
AccI	GTMKAC	1 cut(s)	1005
AccII	CGCG	1 cut(s)	1042
AclI	AACGTT	1 cut(s)	350
AclWI	GGATC	3 cut(s)	710, 1015, 1125
AcoI	YGGCCR	2 cut(s)	185, 445
AcsI	RAATTY	2 cut(s)	131, 1098
AfaI	GTAC	2 cut(s)	491, 1064
AfiI	CCNNNNNNNGG	6 cut(s)	293, 536, 699, 825, 860, 934
AgsI	TTSAA	2 cut(s)	233, 1084
AjnI	CCWGG	1 cut(s)	889
AluBI	AGCT	1 cut(s)	778
AluI	AGCT	1 cut(s)	778
Alw26I	GTCTC	2 cut(s)	117, 806
AlwI	GGATC	3 cut(s)	710, 1015, 1125
Ama87I	CYCGRG	1 cut(s)	1112
AoxI	GGCC	9 cut(s)	112, 137, 185, 283, 445, 457, 526, 538, 925
ApaI	GGGCCC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	46, 775
ApoI	RAATTY	2 cut(s)	131, 1098
Asp700I	GAANNNNTTC	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	1042
AvaI	CYCGRG	1 cut(s)	1112
AvaII	GGWCC	5 cut(s)	97, 248, 787, 851, 957
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	1127
BanII	GRGCYC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	58, 787
BccI	CCATC	3 cut(s)	299, 315, 319
BceAI	ACGGC	2 cut(s)	432, 1115
BciT130I	CCWGG	1 cut(s)	891
BciVI	GTATCC	1 cut(s)	987
BcoDI	GTCTC	2 cut(s)	117, 806
BfaI	CTAG	4 cut(s)	68, 74, 119, 845
BfmI	CTRYAG	1 cut(s)	823
BfuAI	ACCTGC	2 cut(s)	195, 373
BfuI	GTATCC	1 cut(s)	987
BisI	GCNGC	2 cut(s)	47, 776
BlsI	GCNGC	2 cut(s)	48, 777
Bme1390I	CCNGG	1 cut(s)	891
Bme18I	GGWCC	5 cut(s)	97, 248, 787, 851, 957
BmeT110I	CYCGRG	1 cut(s)	1112
BmiI	GGNNCC	5 cut(s)	99, 114, 852, 959, 1129
BmrFI	CCNGG	1 cut(s)	891
BmsI	GCATC	2 cut(s)	259, 490
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	516
BsaI	GGTCTC	2 cut(s)	117, 806
BsaJI	CCNNGG	2 cut(s)	188, 989
Bsc4I	CCNNNNNNNGG	6 cut(s)	293, 536, 699, 825, 860, 934
Bse1I	ACTGG	2 cut(s)	140, 700
Bse3DI	GCAATG	4 cut(s)	153, 428, 492, 1203
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	2 cut(s)	188, 989
BseGI	GGATG	2 cut(s)	330, 1059
BseLI	CCNNNNNNNGG	6 cut(s)	293, 536, 699, 825, 860, 934
BseMI	GCAATG	4 cut(s)	153, 428, 492, 1203
BseMII	CTCAG	5 cut(s)	40, 243, 452, 698, 801
BseNI	ACTGG	2 cut(s)	140, 700
BseRI	GAGGAG	1 cut(s)	791
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	58, 787
BseYI	CCCAGC	2 cut(s)	342, 961
Bsh1236I	CGCG	1 cut(s)	1042
BshFI	GGCC	9 cut(s)	114, 139, 187, 285, 447, 459, 528, 540, 927
BshNI	GGYRCC	1 cut(s)	1127
BsiHKCI	CYCGRG	1 cut(s)	1112
BslFI	GGGAC	2 cut(s)	206, 877
BslI	CCNNNNNNNGG	6 cut(s)	293, 536, 699, 825, 860, 934
BsmAI	GTCTC	2 cut(s)	117, 806
BsmFI	GGGAC	2 cut(s)	206, 877
BsnI	GGCC	9 cut(s)	114, 139, 187, 285, 447, 459, 528, 540, 927
Bso31I	GGTCTC	2 cut(s)	117, 806
BsoBI	CYCGRG	1 cut(s)	1112
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp1407I	TGTACA	2 cut(s)	489, 1062
Bsp143I	GATC	4 cut(s)	715, 1020, 1071, 1117
Bsp19I	CCATGG	1 cut(s)	989
BspANI	GGCC	9 cut(s)	114, 139, 187, 285, 447, 459, 528, 540, 927
BspCNI	CTCAG	5 cut(s)	39, 244, 453, 699, 802
BspFNI	CGCG	1 cut(s)	1042
BspLI	GGNNCC	5 cut(s)	99, 114, 852, 959, 1129
BspMAI	CTGCAG	1 cut(s)	827
BspMI	ACCTGC	2 cut(s)	195, 373
BspPI	GGATC	3 cut(s)	710, 1015, 1125
BspT107I	GGYRCC	1 cut(s)	1127
BspTNI	GGTCTC	2 cut(s)	117, 806
BsrDI	GCAATG	4 cut(s)	153, 428, 492, 1203
BsrGI	TGTACA	2 cut(s)	489, 1062
BsrI	ACTGG	2 cut(s)	140, 700
BssECI	CCNNGG	2 cut(s)	188, 989
BssMI	GATC	4 cut(s)	715, 1020, 1071, 1117
BssT1I	CCWWGG	1 cut(s)	989
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	3 cut(s)	868, 1176, 1189
Bst6I	CTCTTC	1 cut(s)	1085
BstAUI	TGTACA	2 cut(s)	489, 1062
BstC8I	GCNNGC	2 cut(s)	827, 1016
BstDEI	CTNAG	9 cut(s)	26, 252, 393, 461, 707, 726, 783, 810, 1036
BstDSI	CCRYGG	1 cut(s)	989
BstENI	CCTNNNNNAGG	2 cut(s)	291, 534
BstF5I	GGATG	2 cut(s)	330, 1059
BstFNI	CGCG	1 cut(s)	1042
BstHHI	GCGC	1 cut(s)	1042
BstKTI	GATC	4 cut(s)	718, 1023, 1074, 1120
BstMAI	GTCTC	2 cut(s)	117, 806
BstMBI	GATC	4 cut(s)	715, 1020, 1071, 1117
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 427
BstNI	CCWGG	1 cut(s)	891
BstSCI	CCNGG	1 cut(s)	889
BstSFI	CTRYAG	1 cut(s)	823
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	1 cut(s)	1042
BstV1I	GCAGC	2 cut(s)	58, 787
BstXI	CCANNNNNNTGG	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	987
BsuRI	GGCC	9 cut(s)	114, 139, 187, 285, 447, 459, 528, 540, 927
BtgI	CCRYGG	1 cut(s)	989
BtsCI	GGATG	2 cut(s)	330, 1059
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	5 cut(s)	101, 147, 630, 693, 873
BveI	ACCTGC	2 cut(s)	195, 373
Cac8I	GCNNGC	2 cut(s)	827, 1016
CfoI	GCGC	1 cut(s)	1042
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	490, 1063
CspCI	CAANNNNNGTGG	2 cut(s)	546, 581
CviAII	CATG	6 cut(s)	94, 128, 175, 431, 563, 990
CviQI	GTAC	2 cut(s)	490, 1063
DdeI	CTNAG	9 cut(s)	26, 252, 393, 461, 707, 726, 783, 810, 1036
DpnI	GATC	4 cut(s)	717, 1022, 1073, 1119
DpnII	GATC	4 cut(s)	715, 1020, 1071, 1117
EaeI	YGGCCR	2 cut(s)	185, 445
Eam1104I	CTCTTC	1 cut(s)	1085
EarI	CTCTTC	1 cut(s)	1085
Eco130I	CCWWGG	1 cut(s)	989
Eco147I	AGGCCT	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	2 cut(s)	117, 806
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	5 cut(s)	97, 248, 787, 851, 957
Eco88I	CYCGRG	1 cut(s)	1112
EcoNI	CCTNNNNNAGG	2 cut(s)	291, 534
EcoO109I	RGGNCCY	2 cut(s)	851, 957
EcoRII	CCWGG	1 cut(s)	889
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	989
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	989
FaeI	CATG	6 cut(s)	97, 131, 178, 434, 566, 993
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	2 cut(s)	206, 877
FatI	CATG	6 cut(s)	93, 127, 174, 430, 562, 989
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	2 cut(s)	47, 776
FokI	GGATG	2 cut(s)	337, 1066
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	47, 776
FspBI	CTAG	4 cut(s)	68, 74, 119, 845
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	2 cut(s)	47, 776
GsaI	CCCAGC	2 cut(s)	346, 965
HaeIII	GGCC	9 cut(s)	114, 139, 187, 285, 447, 459, 528, 540, 927
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	1042
Hin1II	CATG	6 cut(s)	97, 131, 178, 434, 566, 993
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HinfI	GANTC	3 cut(s)	254, 404, 689
Hpy166II	GTNNAC	5 cut(s)	452, 558, 661, 1006, 1065
Hpy188I	TCNGA	3 cut(s)	29, 708, 1025
Hpy188III	TCNNGA	3 cut(s)	251, 899, 1112
Hpy8I	GTNNAC	5 cut(s)	452, 558, 661, 1006, 1065
HpyAV	CCTTC	9 cut(s)	71, 563, 677, 743, 805, 896, 916, 1084, 1223
HpyCH4III	ACNGT	3 cut(s)	868, 1176, 1189
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	8 cut(s)	46, 106, 158, 356, 590, 775, 825, 954
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 427
HpyF3I	CTNAG	9 cut(s)	26, 252, 393, 461, 707, 726, 783, 810, 1036
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	6 cut(s)	97, 131, 178, 434, 566, 993
HspAI	GCGC	1 cut(s)	1040
Kzo9I	GATC	4 cut(s)	715, 1020, 1071, 1117
Lsp1109I	GCAGC	2 cut(s)	58, 787
LweI	GCATC	2 cut(s)	259, 490
MaeI	CTAG	4 cut(s)	68, 74, 119, 845
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	717, 1022, 1073, 1119
MboI	GATC	4 cut(s)	715, 1020, 1071, 1117
MboII	GAAGA	8 cut(s)	19, 49, 245, 448, 616, 619, 1069, 1072
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	5 cut(s)	14, 131, 370, 929, 1098
MlyI	GAGTC	2 cut(s)	263, 398
MmeI	TCCRAC	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	1 cut(s)	1225
MslI	CAYNNNNRTG	1 cut(s)	612
MspR9I	CCNGG	1 cut(s)	891
MvaI	CCWGG	1 cut(s)	891
MvnI	CGCG	1 cut(s)	1042
MwoI	GCNNNNNNNGC	2 cut(s)	145, 427
NcoI	CCATGG	1 cut(s)	989
NdeII	GATC	4 cut(s)	715, 1020, 1071, 1117
NlaIII	CATG	6 cut(s)	97, 131, 178, 434, 566, 993
NlaIV	GGNNCC	5 cut(s)	99, 114, 852, 959, 1129
NmeAIII	GCCGAG	1 cut(s)	213
PaeR7I	CTCGAG	1 cut(s)	1112
PceI	AGGCCT	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	48, 777
PleI	GAGTC	2 cut(s)	262, 398
PpsI	GAGTC	2 cut(s)	262, 398
PpuMI	RGGWCCY	2 cut(s)	851, 957
Psp1406I	AACGTT	1 cut(s)	350
Psp5II	RGGWCCY	2 cut(s)	851, 957
Psp6I	CCWGG	1 cut(s)	889
PspFI	CCCAGC	2 cut(s)	342, 961
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	5 cut(s)	99, 114, 852, 959, 1129
PspOMI	GGGCCC	1 cut(s)	112
PspPPI	RGGWCCY	2 cut(s)	851, 957
PstI	CTGCAG	1 cut(s)	827
RsaI	GTAC	2 cut(s)	491, 1064
RsaNI	GTAC	2 cut(s)	490, 1063
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	1225
SatI	GCNGC	2 cut(s)	47, 776
Sau3AI	GATC	4 cut(s)	715, 1020, 1071, 1117
SchI	GAGTC	2 cut(s)	263, 398
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	1 cut(s)	116
SfaNI	GCATC	2 cut(s)	259, 490
SfcI	CTRYAG	1 cut(s)	823
Sfr274I	CTCGAG	1 cut(s)	1112
SinI	GGWCC	5 cut(s)	97, 248, 787, 851, 957
SlaI	CTCGAG	1 cut(s)	1112
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	531, 1112
SmoI	CTYRAG	2 cut(s)	531, 1112
Sse9I	AATT	5 cut(s)	14, 131, 370, 929, 1098
SseBI	AGGCCT	1 cut(s)	540
SspI	AATATT	1 cut(s)	839
SspMI	CTAG	4 cut(s)	68, 74, 119, 845
StuI	AGGCCT	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	889
StyI	CCWWGG	1 cut(s)	989
TaaI	ACNGT	3 cut(s)	868, 1176, 1189
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	1113
TasI	AATT	5 cut(s)	14, 131, 370, 929, 1098
TatI	WGTACW	2 cut(s)	489, 1062
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	1 cut(s)	1225
Tru9I	TTAA	1 cut(s)	1225
TscAI	CASTG	5 cut(s)	108, 147, 637, 700, 873
TseI	GCWGC	2 cut(s)	46, 775
TspDTI	ATGAA	6 cut(s)	48, 144, 252, 848, 1070, 1151
TspGWI	ACGGA	1 cut(s)	1012
TspRI	CASTG	5 cut(s)	108, 147, 637, 700, 873
VpaK11BI	GGWCC	5 cut(s)	97, 248, 787, 851, 957
XagI	CCTNNNNNAGG	2 cut(s)	291, 534
XapI	RAATTY	2 cut(s)	131, 1098
XhoI	CTCGAG	1 cut(s)	1112
XmiI	GTMKAC	1 cut(s)	1005
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	4 cut(s)	68, 74, 119, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.