Rh6DG150000

Strictosidine synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
21718108 .. 21719887
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG150000.1

Sequence Viewer

Length: 1293 bp
ATGCATCAAAAACTTCAGTCTATCAAACTTTCGCTGCCTCTTCTCTTTCGATCTCTCTTTAACATGGAGAAGAGAAAGCTGAAAGACAGAGATGAAGCAATATTATTGCAGCACCCGCTTGTGCTTTTCCTTATTCTGGTTTTGGGCTTTGTCATAATGGATCCTCTACAAGTAGGCCCGCTAGGCGGCCATGAATTCAAGCCCGTCAAGCACAGCATTGCGCCATACAAGAAAGTCATGGAGAGGTGGCCGAGGGACAATCTGAGCCGGTTGGGACTCGGGAAGTTGGAGTTCGAGGACGAAGTTTTTGGGCCTGAATCTTTGGAGTTTGATGCATTGGGCCTTGGGCCTTACACCGGGTTAGCCGATGGACGCATCGTGAGATGGATGGGCCCGGATGTGGGTTGGGAGACATTTGCGCTTGTAACAGCAAATTGGTCAGAGCAGGTTTGTGCAAAAGGCAATGAGTCCACCACATACAAGCAATGGAAGCAGGAAAAATGGTGTGGTCGTCCACTAGGGTTAAGATTTGACAAAGTGACTGGAAATCTGTACATTGCGGACGCTTATTATGGACTTCTAGTTGTTGGACCTGAAGGAGGACTCGCAACTCCTTTGTCGACTCAAGACGTAGAGGGCAACCCCATACTCTTTGCAAATGACCTTGATATCCACACCAATGGTTCCATCTTCTTCACAGATACTAGCACGAGATACAACAGAGTGGATCATTTCCTTATACTATTGGAAGGAGAAGCCACCGGTAGGCTTCTGAGATATGACCCTCCCACTAAAACAACTCATGTTGTCTTGCATGGTTTGGCCTTTCCAAATGGCTTACAATTTTCTCAGGACCAAACCTTCCTTCTCTTCACTGAGACCACCAACTGCAGGCTCATGAAATATTGGTTAGAAGGTCCAAAATCTGGAACAGTGGAACTTGTTGCGGACCTTCCAGGATTTCCAGACAATGTAAGAATAAATGAGAAAGGGCAATTCTGGGTAGCAATAGATTGTTGCAGGACTCCAGCACAGGAGGTCCTCTCTAATAATCCATGGTTAAGGAATGTCTACTTTCGCTTGCCAATCCGGATGACCTACTTGGCAAGAATTATGGGAATGAAAATGTACACACTGATCTCGCTATTCAATGACAAGGGAGAAATTTTGGAAGTTCTTGAAGACCGAAAGGGTGAGGTTATGAAACTTGTGAGTGAAGTTAGAGAATCAAAGGGCAAACTCTGGATTGGAACTGTGGCTCATAACCACATTGCTACCGTCCCTTACCCTTAG

Protein Analysis

430

Amino Acids

48.86

Weight (kDa)

6.57

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGL PF08450 155 - 337 1.9e-16 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 220 - 306 4.5e-29 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59530 AT3G59530 AT3G59530
fragaria_vesca FvH4_2g10610
malus_domestica MD04G1040000.v1.1
prunus_persica Prupe.1G192200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0268261
rosa_laevigata RLG00000013923
rosa_multiflora Rmu_sc0007606.1_g000010 Rmu_sc0010202.1_g000005
rosa_roxburghii Rroxscaffold_7G00199930
rosa_rugosa Rorug06G0040300
rosa_samantha Rh6CG154000 Rh6DG150000
rosa_wichuraiana Rw6G013850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 926
AccI GTMKAC 2 cut(s) 620, 1071
AccIII TCCGGA 1 cut(s) 1089
AciI CCGC 5 cut(s) 116, 179, 186, 560, 947
AclWI GGATC 3 cut(s) 155, 168, 735
AcoI YGGCCR 2 cut(s) 187, 248
AcsI RAATTY 2 cut(s) 194, 1164
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 2 cut(s) 554, 1130
AfiI CCNNNNNNNGG 9 cut(s) 136, 185, 356, 400, 401, 599, 765, 891, 926
AgeI ACCGGT 1 cut(s) 761
AgsI TTSAA 3 cut(s) 199, 1150, 1181
AjnI CCWGG 1 cut(s) 955
AjuI GAANNNNNNNTTGG 2 cut(s) 849, 881
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 404, 872
AlwI GGATC 3 cut(s) 155, 168, 735
Ama87I CYCGRG 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 1089
AoxI GGCC 8 cut(s) 175, 187, 248, 311, 340, 347, 391, 822
ApaI GGGCCC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 34, 109
ApoI RAATTY 2 cut(s) 194, 1164
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 761
AspLEI GCGC 2 cut(s) 223, 421
AsuC2I CCSGG 2 cut(s) 358, 395
AsuHPI GGTGA 1 cut(s) 1205
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 5 cut(s) 590, 853, 917, 949, 1039
BaeGI GKGCMC 1 cut(s) 395
BamHI GGATCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 395
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 1 cut(s) 1188
BbvI GCAGC 2 cut(s) 21, 121
BccI CCATC 4 cut(s) 362, 378, 382, 695
BciT130I CCWGG 1 cut(s) 957
BcnI CCSGG 2 cut(s) 358, 395
BcoDI GTCTC 2 cut(s) 404, 872
BfaI CTAG 4 cut(s) 182, 518, 581, 705
BfmI CTRYAG 1 cut(s) 889
BfuAI ACCTGC 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 3 cut(s) 35, 110, 187
BlsI GCNGC 3 cut(s) 36, 111, 188
Bme1390I CCNGG 3 cut(s) 358, 395, 957
Bme18I GGWCC 5 cut(s) 590, 853, 917, 949, 1039
BmeT110I CYCGRG 1 cut(s) 278
BmiI GGNNCC 3 cut(s) 162, 393, 685
BmrFI CCNGG 3 cut(s) 358, 395, 957
BmsI GCATC 3 cut(s) 13, 322, 384
BpiI GAAGAC 1 cut(s) 1188
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
BpmI CTGGAG 1 cut(s) 1011
BpuEI CTTGAG 1 cut(s) 609
BpuMI CCSGG 2 cut(s) 358, 395
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 3 cut(s) 251, 343, 1055
BsaWI WCCGGW 2 cut(s) 761, 1089
Bsc4I CCNNNNNNNGG 9 cut(s) 136, 185, 356, 400, 401, 599, 765, 891, 926
Bse118I RCCGGY 2 cut(s) 267, 761
Bse1I ACTGG 1 cut(s) 547
Bse3DI GCAATG 5 cut(s) 216, 469, 491, 555, 1269
BseAI TCCGGA 1 cut(s) 1089
BseBI CCWGG 1 cut(s) 957
BseDI CCNNGG 3 cut(s) 251, 343, 1055
BseGI GGATG 3 cut(s) 393, 403, 1098
BseLI CCNNNNNNNGG 9 cut(s) 136, 185, 356, 400, 401, 599, 765, 891, 926
BseMI GCAATG 5 cut(s) 216, 469, 491, 555, 1269
BseMII CTCAG 4 cut(s) 254, 764, 863, 867
BseNI ACTGG 1 cut(s) 547
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 2 cut(s) 21, 121
BshFI GGCC 8 cut(s) 177, 189, 250, 313, 342, 349, 393, 824
BshTI ACCGGT 1 cut(s) 761
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 5 cut(s) 268, 357, 395, 762, 1090
BslFI GGGAC 3 cut(s) 269, 288, 1265
BslI CCNNNNNNNGG 9 cut(s) 136, 185, 356, 400, 401, 599, 765, 891, 926
BsmAI GTCTC 2 cut(s) 404, 872
BsmFI GGGAC 3 cut(s) 269, 288, 1265
BsnI GGCC 8 cut(s) 177, 189, 250, 313, 342, 349, 393, 824
Bso31I GGTCTC 1 cut(s) 872
BsoBI CYCGRG 1 cut(s) 278
Bsp120I GGGCCC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 395
Bsp13I TCCGGA 1 cut(s) 1089
Bsp1407I TGTACA 2 cut(s) 552, 1128
Bsp143I GATC 4 cut(s) 50, 160, 727, 1137
Bsp19I CCATGG 1 cut(s) 1055
BspACI CCGC 5 cut(s) 116, 179, 186, 560, 947
BspANI GGCC 8 cut(s) 177, 189, 250, 313, 342, 349, 393, 824
BspCNI CTCAG 4 cut(s) 255, 765, 862, 868
BspEI TCCGGA 1 cut(s) 1089
BspHI TCATGA 1 cut(s) 897
BspLI GGNNCC 3 cut(s) 162, 393, 685
BspMAI CTGCAG 1 cut(s) 893
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 3 cut(s) 155, 168, 735
BspTNI GGTCTC 1 cut(s) 872
BsrDI GCAATG 5 cut(s) 216, 469, 491, 555, 1269
BsrFI RCCGGY 2 cut(s) 267, 761
BsrGI TGTACA 2 cut(s) 552, 1128
BsrI ACTGG 1 cut(s) 547
BssAI RCCGGY 2 cut(s) 267, 761
BssECI CCNNGG 3 cut(s) 251, 343, 1055
BssMI GATC 4 cut(s) 50, 160, 727, 1137
BssSI CACGAG 1 cut(s) 709
BssT1I CCWWGG 2 cut(s) 343, 1055
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 3 cut(s) 934, 1255, 1279
Bst6I CTCTTC 3 cut(s) 45, 65, 875
BstAUI TGTACA 2 cut(s) 552, 1128
BstC8I GCNNGC 3 cut(s) 179, 893, 1082
BstDEI CTNAG 5 cut(s) 263, 773, 849, 876, 1290
BstDSI CCRYGG 1 cut(s) 1055
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 3 cut(s) 393, 403, 1098
BstHHI GCGC 2 cut(s) 223, 421
BstKTI GATC 4 cut(s) 53, 163, 730, 1140
BstMAI GTCTC 2 cut(s) 404, 872
BstMBI GATC 4 cut(s) 50, 160, 727, 1137
BstMWI GCNNNNNNNGC 4 cut(s) 115, 183, 208, 490
BstNI CCWGG 1 cut(s) 957
BstSCI CCNGG 3 cut(s) 356, 393, 955
BstSFI CTRYAG 1 cut(s) 889
BstSLI GKGCMC 1 cut(s) 395
BstV1I GCAGC 2 cut(s) 21, 121
BstV2I GAAGAC 1 cut(s) 1188
BstX2I RGATCY 1 cut(s) 160
BstXI CCANNNNNNTGG 1 cut(s) 680
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 8 cut(s) 177, 189, 250, 313, 342, 349, 393, 824
BtgI CCRYGG 1 cut(s) 1055
BtsCI GGATG 3 cut(s) 393, 403, 1098
BtsIMutI CAGTG 3 cut(s) 873, 939, 1133
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 179, 893, 1082
CciI TCATGA 1 cut(s) 897
CfoI GCGC 2 cut(s) 223, 421
Cfr10I RCCGGY 2 cut(s) 267, 761
CseI GACGC 2 cut(s) 381, 572
Csp6I GTAC 2 cut(s) 553, 1129
CspAI ACCGGT 1 cut(s) 761
CviAII CATG 7 cut(s) 64, 191, 238, 803, 815, 898, 1056
CviQI GTAC 2 cut(s) 553, 1129
DdeI CTNAG 5 cut(s) 263, 773, 849, 876, 1290
DpnI GATC 4 cut(s) 52, 162, 729, 1139
DpnII GATC 4 cut(s) 50, 160, 727, 1137
EaeI YGGCCR 2 cut(s) 187, 248
Eam1104I CTCTTC 3 cut(s) 45, 65, 875
EarI CTCTTC 3 cut(s) 45, 65, 875
Eco130I CCWWGG 2 cut(s) 343, 1055
Eco24I GRGCYC 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 872
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 5 cut(s) 590, 853, 917, 949, 1039
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 1039
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 955
EcoRV GATATC 1 cut(s) 670
EcoT14I CCWWGG 2 cut(s) 343, 1055
EcoT22I ATGCAT 2 cut(s) 6, 337
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 2 cut(s) 343, 1055
FaeI CATG 7 cut(s) 67, 194, 241, 806, 818, 901, 1059
FaqI GGGAC 3 cut(s) 269, 288, 1265
FatI CATG 7 cut(s) 63, 190, 237, 802, 814, 897, 1055
FauI CCCGC 2 cut(s) 123, 186
FblI GTMKAC 2 cut(s) 620, 1071
Fnu4HI GCNGC 3 cut(s) 35, 110, 187
FokI GGATG 3 cut(s) 400, 410, 1105
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 3 cut(s) 35, 110, 187
FspBI CTAG 4 cut(s) 182, 518, 581, 705
GlaI GCGC 2 cut(s) 222, 420
GluI GCNGC 3 cut(s) 35, 110, 187
GsuI CTGGAG 1 cut(s) 1011
HaeIII GGCC 8 cut(s) 177, 189, 250, 313, 342, 349, 393, 824
HapII CCGG 5 cut(s) 268, 357, 395, 762, 1090
HgaI GACGC 2 cut(s) 381, 572
HhaI GCGC 2 cut(s) 223, 421
Hin1II CATG 7 cut(s) 67, 194, 241, 806, 818, 901, 1059
Hin6I GCGC 2 cut(s) 221, 419
HinP1I GCGC 2 cut(s) 221, 419
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 7 cut(s) 276, 317, 467, 603, 622, 1024, 1226
HpaII CCGG 5 cut(s) 268, 357, 395, 762, 1090
HphI GGTGA 1 cut(s) 1205
Hpy166II GTNNAC 5 cut(s) 471, 515, 621, 1072, 1131
Hpy188I TCNGA 3 cut(s) 264, 442, 774
Hpy8I GTNNAC 5 cut(s) 471, 515, 621, 1072, 1131
HpyAV CCTTC 6 cut(s) 590, 743, 871, 875, 908, 962
HpyCH4III ACNGT 3 cut(s) 934, 1255, 1279
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 8 cut(s) 4, 109, 335, 455, 656, 814, 891, 1020
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 183, 208, 490
HpyF3I CTNAG 5 cut(s) 263, 773, 849, 876, 1290
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 7 cut(s) 67, 194, 241, 806, 818, 901, 1059
HspAI GCGC 2 cut(s) 221, 419
Kpn2I TCCGGA 1 cut(s) 1089
Kzo9I GATC 4 cut(s) 50, 160, 727, 1137
Lsp1109I GCAGC 2 cut(s) 21, 121
LweI GCATC 3 cut(s) 13, 322, 384
MaeI CTAG 4 cut(s) 182, 518, 581, 705
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 2 cut(s) 424, 538
MalI GATC 4 cut(s) 52, 162, 729, 1139
MboI GATC 4 cut(s) 50, 160, 727, 1137
MboII GAAGA 6 cut(s) 32, 82, 682, 685, 862, 1193
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 6 cut(s) 194, 433, 842, 995, 1110, 1164
MlyI GAGTC 5 cut(s) 270, 476, 597, 616, 1018
MmeI TCCRAC 2 cut(s) 267, 568
Mph1103I ATGCAT 2 cut(s) 6, 337
MroI TCCGGA 1 cut(s) 1089
MseI TTAA 3 cut(s) 60, 524, 1061
MslI CAYNNNNRTG 1 cut(s) 678
MspI CCGG 5 cut(s) 268, 357, 395, 762, 1090
MspR9I CCNGG 3 cut(s) 358, 395, 957
MvaI CCWGG 1 cut(s) 957
MwoI GCNNNNNNNGC 4 cut(s) 115, 183, 208, 490
NciI CCSGG 2 cut(s) 358, 395
NcoI CCATGG 1 cut(s) 1055
NdeII GATC 4 cut(s) 50, 160, 727, 1137
NlaIII CATG 7 cut(s) 67, 194, 241, 806, 818, 901, 1059
NlaIV GGNNCC 3 cut(s) 162, 393, 685
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 538
NsiI ATGCAT 2 cut(s) 6, 337
PagI TCATGA 1 cut(s) 897
PfeI GAWTC 2 cut(s) 317, 1226
PflMI CCANNNNNTGG 1 cut(s) 926
PfoI TCCNGGA 1 cut(s) 955
PinAI ACCGGT 1 cut(s) 761
PkrI GCNGC 3 cut(s) 36, 111, 188
PleI GAGTC 5 cut(s) 270, 475, 597, 616, 1018
PpsI GAGTC 5 cut(s) 270, 475, 597, 616, 1018
PpuMI RGGWCCY 1 cut(s) 1039
Psp5II RGGWCCY 1 cut(s) 1039
Psp6I CCWGG 1 cut(s) 955
PspGI CCWGG 1 cut(s) 955
PspN4I GGNNCC 3 cut(s) 162, 393, 685
PspOMI GGGCCC 1 cut(s) 391
PspPPI RGGWCCY 1 cut(s) 1039
PstI CTGCAG 1 cut(s) 893
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 554, 1130
RsaNI GTAC 2 cut(s) 553, 1129
RseI CAYNNNNRTG 1 cut(s) 678
SalI GTCGAC 1 cut(s) 619
SaqAI TTAA 3 cut(s) 60, 524, 1061
SatI GCNGC 3 cut(s) 35, 110, 187
Sau3AI GATC 4 cut(s) 50, 160, 727, 1137
SchI GAGTC 5 cut(s) 270, 476, 597, 616, 1018
ScrFI CCNGG 3 cut(s) 358, 395, 957
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 3 cut(s) 13, 322, 384
SfcI CTRYAG 1 cut(s) 889
SinI GGWCC 5 cut(s) 590, 853, 917, 949, 1039
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 6 cut(s) 194, 433, 842, 995, 1110, 1164
SsiI CCGC 5 cut(s) 116, 179, 186, 560, 947
SspI AATATT 2 cut(s) 102, 905
SspMI CTAG 4 cut(s) 182, 518, 581, 705
StyD4I CCNGG 3 cut(s) 356, 393, 955
StyI CCWWGG 2 cut(s) 343, 1055
TaaI ACNGT 3 cut(s) 934, 1255, 1279
TaiI ACGT 1 cut(s) 633
TaqI TCGA 3 cut(s) 49, 294, 620
TaqII GACCGA 1 cut(s) 1200
TasI AATT 6 cut(s) 194, 433, 842, 995, 1110, 1164
TatI WGTACW 2 cut(s) 552, 1128
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 2 cut(s) 317, 1226
Tru1I TTAA 3 cut(s) 60, 524, 1061
Tru9I TTAA 3 cut(s) 60, 524, 1061
TscAI CASTG 3 cut(s) 880, 939, 1140
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 2 cut(s) 34, 109
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 5 cut(s) 108, 207, 914, 1136, 1217
TspRI CASTG 3 cut(s) 880, 939, 1140
Van91I CCANNNNNTGG 1 cut(s) 926
VpaK11BI GGWCC 5 cut(s) 590, 853, 917, 949, 1039
XagI CCTNNNNNAGG 1 cut(s) 597
XapI RAATTY 2 cut(s) 194, 1164
XmiI GTMKAC 2 cut(s) 620, 1071
XspI CTAG 4 cut(s) 182, 518, 581, 705
Zsp2I ATGCAT 2 cut(s) 6, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.