Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015982

Physical Location & Seq

Genomic Coordinates Forward (+)

5014561 .. 5127302

Gene Structure 112742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGAGAACTCGCAAAGCTCATTGTTTAGTCCTAACCTATCCAACCCAAGGACATATCAATCCCATGCTTCAATTTGCCAAGCTTCTCCATCACAAAGGACTCAAAGTCACATTGGTCACAACTCATTTTCTCCTGAACACATTACAACTCCATGCCGGATCCAGTAAGTGCAATATTTGCCTCGAGACCATTTCTGATGGCTACGATGAGGGAGGGCCTTGGTCCTTGGATGTTGCCAAGAAATTTGGGATCTTTGGGGCTGTTTTCTTTACCCAGTCTAGTGCTGTTGGAAATATTTATTATCATGCCCAAAAAGGACTGTTGAAGCTTCCTGTTAGTGGCGGTGATGGGGAAATTTTGATCCCAGGGTTGCAGCTTCCGCTTGAAGCTGTCGATTTTCCATCCTTTTTGTGCGATTTGGGGTCGAATCCTGCTGTGTATGATATGGTTGTTGGTCAGTTCTCTAATGTTGATGAGGCTGATTGGATTCTCTGCAACACATTTCATGAGTTGGAACCAGAAGTGGTAGATTGGATGTCGAATCTTTGGCCATTGAAGACAATAGGACCAACCATACCATCCATGTACTTGGATAACCGACTTAAACAAGACAAAGATTATGGTGTCAGTCTCTTCAAGCAAAATAATGATGCCTGCATGAAATGGCTCAATGACCAGCCGAAGGGGTCTGTTGTTTACGTGTCATTTGAAGTTGGCAAGATCCCGAAAGGGTTCGTGGAGGAGACATCTGAGAAGGGTTTGGTAGTCTCTTGGTGTCCGGAACTGGAGGTCTTGGCTCATGAAGCTGTTGGGTGCTTCATTACACATTGTGGTTGGAACTCCACATTGGAGGCTTTGAGTTTAGGGGTTCCAATGCTGGCAATGCCACAATGGACTGACCAAGGAACCAATGCCAAGTACATTATGGATGTGTGGAAAACTGGACTTAAAGCTTTAGCTGATGAGAAAGGAATTGTAAGGAAAGATGTGGTTGAGCATTGTATAATTGAAATAATGGAAGGAGAGACAGGGAAAGAGAGTCGAAGGAATACCATGAAATGGAAGCAAGTGGCTAGAAAGGCTACGGATGAGGGTGGAAGTTCTGACAAAAACATTGGTGAGTTCATCGCAAAAGTAGCACAGCATGTGCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0016788 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

386

Amino Acids

42.85

Weight (kDa)

5.66

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	250 - 347	4e-16	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59530 AT3G59530 AT3G59530
fragaria_vesca	FvH4_2g10610
malus_domestica	MD04G1040000.v1.1
prunus_persica	Prupe.1G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268261
rosa_laevigata	RLG00000013923
rosa_multiflora	Rmu_sc0007606.1_g000010 Rmu_sc0010202.1_g000005
rosa_roxburghii	Rroxscaffold_7G00199930
rosa_rugosa	Rorug06G0040300
rosa_samantha	Rh6CG154000 Rh6DG150000
rosa_wichuraiana	Rw6G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1062
AccIII	TCCGGA	1 cut(s)	781
AciI	CCGC	2 cut(s)	345, 383
AclWI	GGATC	5 cut(s)	156, 169, 260, 358, 718
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	245, 357
AdeI	CACNNNGTG	1 cut(s)	833
AfaI	GTAC	2 cut(s)	590, 923
AfiI	CCNNNNNNNGG	4 cut(s)	50, 341, 685, 1062
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	7 cut(s)	74, 328, 389, 559, 640, 713, 1013
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
AluBI	AGCT	8 cut(s)	20, 85, 331, 379, 392, 809, 956, 962
AluI	AGCT	8 cut(s)	20, 85, 331, 379, 392, 809, 956, 962
Alw26I	GTCTC	5 cut(s)	182, 638, 740, 775, 1022
AlwI	GGATC	5 cut(s)	156, 169, 260, 358, 718
Ama87I	CYCGRG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	781
AoxI	GGCC	2 cut(s)	218, 551
ApeKI	GCWGC	2 cut(s)	376, 1153
ApoI	RAATTY	2 cut(s)	245, 357
Asp700I	GAANNNNTTC	1 cut(s)	734
AspS9I	GGNCC	3 cut(s)	218, 225, 569
AsuHPI	GGTGA	2 cut(s)	359, 1133
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	225, 569
BalI	TGGCCA	1 cut(s)	553
BamHI	GGATCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	566
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	5 cut(s)	99, 194, 344, 412, 589
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	5 cut(s)	182, 638, 740, 775, 1022
BfaI	CTAG	3 cut(s)	282, 1077, 1159
BisI	GCNGC	2 cut(s)	377, 1154
BlsI	GCNGC	2 cut(s)	378, 1155
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	2 cut(s)	225, 569
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	218, 225, 569
BmiI	GGNNCC	4 cut(s)	163, 519, 873, 910
BmrFI	CCNGG	1 cut(s)	369
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	643
BmuI	ACTGGG	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	809
BsaAI	YACGTR	1 cut(s)	703
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	6 cut(s)	49, 221, 228, 367, 368, 904
BsaWI	WCCGGW	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 341, 685, 1062
Bse1I	ACTGG	4 cut(s)	165, 277, 792, 949
Bse3DI	GCAATG	1 cut(s)	891
BseAI	TCCGGA	1 cut(s)	781
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	6 cut(s)	49, 221, 228, 367, 368, 904
BseGI	GGATG	6 cut(s)	238, 404, 543, 581, 937, 1096
BseLI	CCNNNNNNNGG	4 cut(s)	50, 341, 685, 1062
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	4 cut(s)	165, 277, 792, 949
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	2 cut(s)	220, 553
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	159, 782
BslI	CCNNNNNNNGG	4 cut(s)	50, 341, 685, 1062
BsmAI	GTCTC	5 cut(s)	182, 638, 740, 775, 1022
BsnI	GGCC	2 cut(s)	220, 553
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	185
Bsp13I	TCCGGA	1 cut(s)	781
Bsp143I	GATC	4 cut(s)	161, 252, 363, 723
BspACI	CCGC	2 cut(s)	345, 383
BspANI	GGCC	2 cut(s)	220, 553
BspCNI	CTCAG	1 cut(s)	745
BspEI	TCCGGA	1 cut(s)	781
BspHI	TCATGA	2 cut(s)	508, 802
BspLI	GGNNCC	4 cut(s)	163, 519, 873, 910
BspPI	GGATC	5 cut(s)	156, 169, 260, 358, 718
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	4 cut(s)	165, 277, 792, 949
BssECI	CCNNGG	6 cut(s)	49, 221, 228, 367, 368, 904
BssMI	GATC	4 cut(s)	161, 252, 363, 723
BssT1I	CCWWGG	4 cut(s)	49, 221, 228, 904
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	641
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	658, 882
BstDEI	CTNAG	1 cut(s)	753
BstF5I	GGATG	6 cut(s)	238, 404, 543, 581, 937, 1096
BstKTI	GATC	4 cut(s)	164, 255, 366, 726
BstMAI	GTCTC	5 cut(s)	182, 638, 740, 775, 1022
BstMBI	GATC	4 cut(s)	161, 252, 363, 723
BstMWI	GCNNNNNNNGC	7 cut(s)	180, 382, 806, 886, 1082, 1139, 1153
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	1151
BstSCI	CCNGG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	3 cut(s)	161, 252, 723
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	3 cut(s)	161, 252, 723
BsuRI	GGCC	2 cut(s)	220, 553
BtgZI	GCGATG	1 cut(s)	1114
BtsCI	GGATG	6 cut(s)	238, 404, 543, 581, 937, 1096
Cac8I	GCNNGC	2 cut(s)	658, 882
CciI	TCATGA	2 cut(s)	508, 802
Cfr13I	GGNCC	3 cut(s)	218, 225, 569
Csp6I	GTAC	2 cut(s)	589, 922
CviAII	CATG	9 cut(s)	67, 155, 308, 509, 586, 661, 803, 1057, 1148
CviQI	GTAC	2 cut(s)	589, 922
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	4 cut(s)	163, 254, 365, 725
DpnII	GATC	4 cut(s)	161, 252, 363, 723
DraIII	CACNNNGTG	1 cut(s)	833
DriI	GACNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	551
Eam1104I	CTCTTC	1 cut(s)	641
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	4 cut(s)	49, 221, 228, 904
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	225, 569
Eco88I	CYCGRG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	4 cut(s)	49, 221, 228, 904
ErhI	CCWWGG	4 cut(s)	49, 221, 228, 904
FaeI	CATG	9 cut(s)	70, 158, 311, 512, 589, 664, 806, 1060, 1151
FatI	CATG	9 cut(s)	66, 154, 307, 508, 585, 660, 802, 1056, 1147
Fnu4HI	GCNGC	2 cut(s)	377, 1154
FokI	GGATG	6 cut(s)	245, 391, 550, 568, 944, 1103
Fsp4HI	GCNGC	2 cut(s)	377, 1154
FspBI	CTAG	3 cut(s)	282, 1077, 1159
GluI	GCNGC	2 cut(s)	377, 1154
GsuI	CTGGAG	1 cut(s)	809
HaeIII	GGCC	2 cut(s)	220, 553
HapII	CCGG	2 cut(s)	159, 782
Hin1II	CATG	9 cut(s)	70, 158, 311, 512, 589, 664, 806, 1060, 1151
HindIII	AAGCTT	3 cut(s)	83, 329, 954
HinfI	GANTC	5 cut(s)	102, 430, 490, 544, 1042
HpaII	CCGG	2 cut(s)	159, 782
HphI	GGTGA	2 cut(s)	359, 1133
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	3 cut(s)	199, 754, 1108
Hpy188III	TCNNGA	6 cut(s)	136, 187, 509, 727, 782, 803
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	4 cut(s)	679, 751, 1016, 1041
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	5 cut(s)	174, 376, 498, 660, 1153
HpyF10VI	GCNNNNNNNGC	7 cut(s)	180, 382, 806, 886, 1082, 1139, 1153
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	9 cut(s)	70, 158, 311, 512, 589, 664, 806, 1060, 1151
Kpn2I	TCCGGA	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	161, 252, 363, 723
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	3 cut(s)	282, 1077, 1159
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	109, 118
MalI	GATC	4 cut(s)	163, 254, 365, 725
MboI	GATC	4 cut(s)	161, 252, 363, 723
MboII	GAAGA	2 cut(s)	571, 628
MflI	RGATCY	3 cut(s)	161, 252, 723
MlsI	TGGCCA	1 cut(s)	553
MluCI	AATT	5 cut(s)	74, 245, 357, 975, 1008
MluNI	TGGCCA	1 cut(s)	553
MlyI	GAGTC	2 cut(s)	96, 1051
MmeI	TCCRAC	4 cut(s)	68, 271, 495, 818
MnlI	CCTC	8 cut(s)	194, 205, 209, 472, 736, 784, 847, 1087
Mox20I	TGGCCA	1 cut(s)	553
MroI	TCCGGA	1 cut(s)	781
MroXI	GAANNNNTTC	1 cut(s)	734
MscI	TGGCCA	1 cut(s)	553
MseI	TTAA	2 cut(s)	606, 951
Msp20I	TGGCCA	1 cut(s)	553
MspI	CCGG	2 cut(s)	159, 782
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	7 cut(s)	180, 382, 806, 886, 1082, 1139, 1153
NdeII	GATC	4 cut(s)	161, 252, 363, 723
NlaIII	CATG	9 cut(s)	70, 158, 311, 512, 589, 664, 806, 1060, 1151
NlaIV	GGNNCC	4 cut(s)	163, 519, 873, 910
NmuCI	GTSAC	2 cut(s)	109, 118
NspI	RCATGY	1 cut(s)	1151
PaeR7I	CTCGAG	1 cut(s)	185
PagI	TCATGA	2 cut(s)	508, 802
PasI	CCCWGGG	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	3 cut(s)	430, 490, 544
PflMI	CCANNNNNTGG	1 cut(s)	1062
PkrI	GCNGC	2 cut(s)	378, 1155
PleI	GAGTC	2 cut(s)	96, 1050
PpsI	GAGTC	2 cut(s)	96, 1050
Ppu21I	YACGTR	1 cut(s)	703
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	4 cut(s)	163, 519, 873, 910
PspPI	GGNCC	3 cut(s)	218, 225, 569
PsuI	RGATCY	3 cut(s)	161, 252, 723
RsaI	GTAC	2 cut(s)	590, 923
RsaNI	GTAC	2 cut(s)	589, 922
SaqAI	TTAA	2 cut(s)	606, 951
SatI	GCNGC	2 cut(s)	377, 1154
Sau3AI	GATC	4 cut(s)	161, 252, 363, 723
Sau96I	GGNCC	3 cut(s)	218, 225, 569
SchI	GAGTC	2 cut(s)	96, 1051
ScrFI	CCNGG	1 cut(s)	369
SfaNI	GCATC	1 cut(s)	643
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	2 cut(s)	225, 569
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	5 cut(s)	74, 245, 357, 975, 1008
SsiI	CCGC	2 cut(s)	345, 383
SspI	AATATT	2 cut(s)	178, 298
SspMI	CTAG	3 cut(s)	282, 1077, 1159
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	4 cut(s)	49, 221, 228, 904
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	5 cut(s)	186, 396, 428, 542, 1045
TasI	AATT	5 cut(s)	74, 245, 357, 975, 1008
TatI	WGTACW	2 cut(s)	588, 921
TfiI	GAWTC	3 cut(s)	430, 490, 544
Tru1I	TTAA	2 cut(s)	606, 951
Tru9I	TTAA	2 cut(s)	606, 951
TseFI	GTSAC	2 cut(s)	109, 118
TseI	GCWGC	2 cut(s)	376, 1153
Tsp45I	GTSAC	2 cut(s)	109, 118
TspDTI	ATGAA	6 cut(s)	497, 677, 811, 819, 1073, 1117
TspGWI	ACGGA	1 cut(s)	1103
Van91I	CCANNNNNTGG	1 cut(s)	1062
VpaK11BI	GGWCC	2 cut(s)	225, 569
XapI	RAATTY	2 cut(s)	245, 357
XceI	RCATGY	1 cut(s)	1151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XhoI	CTCGAG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	3 cut(s)	282, 1077, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.