AT3G59840

13-prostaglandin reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016611
Physical Location & Seq
Reverse (-)
22105522 .. 22106242
721 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59840.1

Sequence Viewer

Length: 294 bp
ATGGGGATTCTATCATGGTTCACGGGAAGTCCTAAGCCATCACAGTCCGAGACGTCTAAGCCGGAGATGATTCAGATGCCGAAATCAGAAACTCCAGCCCCGGGGATGAATGGAGCCATAGAAGTTCCTCGGCCCGATCGCGCGACGGTTTTCGAGTTCGGCTCCGTTGCTGCTACTGGAGACAGAGTCACTCTCGCTGGTTACTGTCCCGTTTCCGATGATCTCGAACCTTGCCGTTGGGAGATTCTTCCCGCCGACGGCAAAGACGCTCCACAGTTTCGCGTCGTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.5

Weight (kDa)

4.65

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016611)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59840
malus_domestica MD16G1269400.v1.1
prunus_persica Prupe.5G046200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208331
rosa_laevigata RLG00000003226
rosa_multiflora Rmu_sc0000841.1_g000010 Rmu_sc0007869.1_g000030
rosa_roxburghii Rroxscaffold_3G00250560
rosa_rugosa Rorug07G0103500
rosa_samantha Rh7AG237800 Rh7BG233400 Rh7CG253500 Rh7DG243800
rosa_wichuraiana Rw7G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 56
AccII CGCG 3 cut(s) 141, 143, 282
AciI CCGC 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 101, 257
Alw26I GTCTC 2 cut(s) 44, 174
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 2 cut(s) 101, 102
AvaI CYCGRG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 46
BceAI ACGGC 2 cut(s) 219, 274
BcnI CCSGG 2 cut(s) 101, 102
BcoDI GTCTC 2 cut(s) 44, 174
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 2 cut(s) 101, 102
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 115, 163
BmrFI CCNGG 2 cut(s) 101, 102
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 280
BplI GAGNNNNNCTC 4 cut(s) 146, 178, 177, 209
BpmI CTGGAG 2 cut(s) 78, 198
Bpu10I CCTNAGC 1 cut(s) 33
BpuMI CCSGG 2 cut(s) 101, 102
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 4 cut(s) 99, 100, 101, 128
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 257
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 4 cut(s) 99, 100, 101, 128
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 101, 257
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 157
Bsh1236I CGCG 3 cut(s) 141, 143, 282
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 2 cut(s) 62, 101
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 101, 257
BsmAI GTCTC 2 cut(s) 44, 174
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 100
Bsp143I GATC 2 cut(s) 136, 220
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 133
BspFNI CGCG 3 cut(s) 141, 143, 282
BspLI GGNNCC 2 cut(s) 115, 163
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 4 cut(s) 99, 100, 101, 128
BssMI GATC 2 cut(s) 136, 220
BssNI GRCGYC 1 cut(s) 53
Bst4CI ACNGT 4 cut(s) 45, 148, 206, 276
BstACI GRCGYC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 33, 57
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 3 cut(s) 141, 143, 282
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 139, 223
BstMAI GTCTC 2 cut(s) 44, 174
BstMBI GATC 2 cut(s) 136, 220
BstMCI CGRYCG 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 99, 100
BstUI CGCG 3 cut(s) 141, 143, 282
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 111
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 100
CseI GACGC 2 cut(s) 271, 275
CviAII CATG 1 cut(s) 15
CviJI RGCY 6 cut(s) 37, 61, 98, 116, 133, 162
CviKI_1 RGCY 6 cut(s) 37, 61, 98, 116, 133, 162
DdeI CTNAG 2 cut(s) 33, 57
DpnI GATC 2 cut(s) 138, 222
DpnII GATC 2 cut(s) 136, 220
Eco88I CYCGRG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 1 cut(s) 18
FaiI YATR 2 cut(s) 16, 119
FaqI GGGAC 1 cut(s) 192
FatI CATG 1 cut(s) 14
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 171
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 2 cut(s) 78, 198
HaeIII GGCC 1 cut(s) 133
HapII CCGG 2 cut(s) 62, 101
HgaI GACGC 2 cut(s) 271, 275
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 4 cut(s) 7, 70, 186, 244
HpaII CCGG 2 cut(s) 62, 101
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 5 cut(s) 49, 75, 88, 217, 293
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 3 cut(s) 148, 260, 287
HpyCH4III ACNGT 4 cut(s) 45, 148, 206, 276
HpyCH4IV ACGT 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 33, 57
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 136, 220
LmnI GCTCC 3 cut(s) 113, 167, 274
LpnPI CCDG 5 cut(s) 75, 108, 114, 162, 183
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 66
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 187, 200
MalI GATC 2 cut(s) 138, 222
MboI GATC 2 cut(s) 136, 220
MboII GAAGA 2 cut(s) 239, 280
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 1 cut(s) 138
MspI CCGG 2 cut(s) 62, 101
MspR9I CCNGG 2 cut(s) 101, 102
MvnI CGCG 3 cut(s) 141, 143, 282
NciI CCSGG 2 cut(s) 101, 102
NdeII GATC 2 cut(s) 136, 220
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 2 cut(s) 115, 163
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 187
PfeI GAWTC 3 cut(s) 7, 70, 244
PflFI GACNNNGTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 172
Ple19I CGATCG 1 cut(s) 139
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 115, 163
PspPI GGNCC 1 cut(s) 132
PsyI GACNNNGTC 1 cut(s) 185
PvuI CGATCG 1 cut(s) 139
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 2 cut(s) 136, 220
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 101, 102
SetI ASST 2 cut(s) 56, 232
SfaNI GCATC 1 cut(s) 66
SmaI CCCGGG 1 cut(s) 102
SsiI CCGC 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 99, 100
TaaI ACNGT 4 cut(s) 45, 148, 206, 276
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 153, 225
TfiI GAWTC 3 cut(s) 7, 70, 244
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 154
TspMI CCCGGG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 185
XmaI CCCGGG 1 cut(s) 100
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.