Rh7CG253500

13-prostaglandin reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016611
Physical Location & Seq
Forward (+)
24423220 .. 24423408
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG253500.1

Sequence Viewer

Length: 189 bp
ATGAACGGCGCCGTTGAGGTCCCACGGCCCGCCAAAGTCACCGTCTTTGAATTCGGGTCGGTCGCCGCTTCCGCAGATAAGGTCACTCTCGCCGGGTACTGCCCCGTCTCGGAGGAGCTCGAGCCCTGCCGCTGGGAGATCCTCTCCGCGAGTGGCTCCGACGCGCCGCAGTTCCGCGTGGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.62

Weight (kDa)

4.6

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016611)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59840
malus_domestica MD16G1269400.v1.1
prunus_persica Prupe.5G046200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208331
rosa_laevigata RLG00000003226
rosa_multiflora Rmu_sc0000841.1_g000010 Rmu_sc0007869.1_g000030
rosa_roxburghii Rroxscaffold_3G00250560
rosa_rugosa Rorug07G0103500
rosa_samantha Rh7AG237800 Rh7BG233400 Rh7CG253500 Rh7DG243800
rosa_wichuraiana Rw7G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AccII CGCG 3 cut(s) 149, 164, 177
AciI CCGC 7 cut(s) 30, 66, 72, 130, 147, 167, 175
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 109, 132
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspLEI GCGC 2 cut(s) 11, 166
AspS9I GGNCC 2 cut(s) 19, 27
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 2 cut(s) 120, 126
Bbv12I GWGCWC 1 cut(s) 120
BceAI ACGGC 2 cut(s) 22, 41
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 112
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 3 cut(s) 66, 130, 167
BlsI GCNGC 3 cut(s) 67, 131, 168
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 19, 27
BmiI GGNNCC 3 cut(s) 10, 21, 157
BmrFI CCNGG 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuMI CCSGG 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 132
BseDI CCNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 109, 132
BseRI GAGGAG 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 132
Bsh1236I CGCG 3 cut(s) 149, 164, 177
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 109, 132
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 120, 126
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 7 cut(s) 30, 66, 72, 130, 147, 167, 175
BspANI GGCC 1 cut(s) 28
BspFNI CGCG 3 cut(s) 149, 164, 177
BspLI GGNNCC 3 cut(s) 10, 21, 157
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 23
BstFNI CGCG 3 cut(s) 149, 164, 177
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 166
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 138
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 92
BstUI CGCG 3 cut(s) 149, 164, 177
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 28
BtgI CCRYGG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 2 cut(s) 11, 166
Cfr13I GGNCC 2 cut(s) 19, 27
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 4 cut(s) 28, 118, 124, 156
CviKI_1 RGCY 4 cut(s) 28, 118, 124, 156
CviQI GTAC 1 cut(s) 97
DinI GGCGCC 1 cut(s) 10
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 2 cut(s) 120, 126
Eco47I GGWCC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 50
EcoT38I GRGCYC 2 cut(s) 120, 126
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 112
FaqI GGGAC 1 cut(s) 5
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 66, 130, 167
FriOI GRGCYC 2 cut(s) 120, 126
Fsp4HI GCNGC 3 cut(s) 66, 130, 167
GlaI GCGC 2 cut(s) 10, 165
GluI GCNGC 3 cut(s) 66, 130, 167
GsaI CCCAGC 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 170
HhaI GCGC 2 cut(s) 11, 166
Hin1I GRCGYC 1 cut(s) 9
Hin6I GCGC 2 cut(s) 9, 164
HinP1I GCGC 2 cut(s) 9, 164
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 112, 160, 188
Hpy99I CGWCG 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 9
HspAI GCGC 2 cut(s) 9, 164
KasI GGCGCC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 115, 161
LpnPI CCDG 3 cut(s) 106, 118, 139
MaeIII GTNAC 2 cut(s) 37, 82
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 120, 126
MluCI AATT 1 cut(s) 50
Mly113I GGCGCC 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 3 cut(s) 10, 106, 152
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 94
MvnI CGCG 3 cut(s) 149, 164, 177
MwoI GCNNNNNNNGC 1 cut(s) 71
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 1 cut(s) 94
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 3 cut(s) 10, 21, 157
NmuCI GTSAC 2 cut(s) 37, 82
PaeR7I CTCGAG 1 cut(s) 119
PkrI GCNGC 3 cut(s) 67, 131, 168
PluTI GGCGCC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 132
PspN4I GGNNCC 3 cut(s) 10, 21, 157
PspPI GGNCC 2 cut(s) 19, 27
PspPPI RGGWCCY 1 cut(s) 19
PspXI VCTCGAGB 1 cut(s) 119
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SacI GAGCTC 1 cut(s) 120
SatI GCNGC 3 cut(s) 66, 130, 167
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 19, 27
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 2 cut(s) 120, 126
SetI ASST 3 cut(s) 21, 84, 120
SfoI GGCGCC 1 cut(s) 10
Sfr274I CTCGAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 50
SsiI CCGC 7 cut(s) 30, 66, 72, 130, 147, 167, 175
SspDI GGCGCC 1 cut(s) 8
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 120
TaqII GACCGA 1 cut(s) 49
TasI AATT 1 cut(s) 50
TauI GCSGC 3 cut(s) 68, 132, 169
TseFI GTSAC 2 cut(s) 37, 82
Tsp45I GTSAC 2 cut(s) 37, 82
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 50
XhoI CTCGAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.