Prupe.5G046200_v2.0.a1

13-prostaglandin reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016611
Physical Location & Seq
Reverse (-)
4992853 .. 4993135
283 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G046200.1

Sequence Viewer

Length: 276 bp
ATGGGTCTGCTCTCATGGTGGAAAGGCAAAGACCCCAAACCCGAAACCAAGCCCAACCCTGCTCCGAAACCCGTCGAGGCTCCGGGCATGAACGGCGCCGTTGAGGTGCCTCGACCCGCCAACATCACAGTCTTTGAATTCGGGTCGGTCGCCGCTTCCGCCGACAATGTCACTCTCGCCGGATACTGCCCCGTTTCCGAAGACCTCGAGCCCTGCCGCTGGGAGATCCTCCCCGCCAGTGGCTCCGACGCACCCCAGTTTCGCGTGGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.74

Weight (kDa)

4.76

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016611)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59840
malus_domestica MD16G1269400.v1.1
prunus_persica Prupe.5G046200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208331
rosa_laevigata RLG00000003226
rosa_multiflora Rmu_sc0000841.1_g000010 Rmu_sc0007869.1_g000030
rosa_roxburghii Rroxscaffold_3G00250560
rosa_rugosa Rorug07G0103500
rosa_samantha Rh7AG237800 Rh7BG233400 Rh7CG253500 Rh7DG243800
rosa_wichuraiana Rw7G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 95, 106
AccII CGCG 1 cut(s) 264
AciI CCGC 5 cut(s) 117, 153, 159, 217, 234
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 219, 239
AgsI TTSAA 1 cut(s) 137
AlwI GGATC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 206
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 206
BanI GGYRCC 2 cut(s) 95, 106
BanII GRGCYC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 207
BceAI ACGGC 2 cut(s) 83, 109
BciVI GTATCC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 99
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 2 cut(s) 153, 217
BlsI GCNGC 2 cut(s) 154, 218
Bme1390I CCNGG 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 206
BmiI GGNNCC 4 cut(s) 81, 97, 108, 244
BmrFI CCNGG 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 239
Bse1I ACTGG 2 cut(s) 237, 256
BseLI CCNNNNNNNGG 2 cut(s) 219, 239
BseNI ACTGG 2 cut(s) 237, 256
BseYI CCCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 150
BshNI GGYRCC 2 cut(s) 95, 106
BsiEI CGRYCG 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 2 cut(s) 83, 180
BslI CCNNNNNNNGG 2 cut(s) 219, 239
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 5 cut(s) 117, 153, 159, 217, 234
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 4 cut(s) 81, 97, 108, 244
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 2 cut(s) 95, 106
BsrI ACTGG 2 cut(s) 237, 256
BssMI GATC 1 cut(s) 225
BssNI GRCGYC 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 96
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 93, 158
BstSCI CCNGG 1 cut(s) 82
BstUI CGCG 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuI GTATCC 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 244
CfoI GCGC 1 cut(s) 98
CseI GACGC 1 cut(s) 257
CviAII CATG 2 cut(s) 15, 88
CviJI RGCY 4 cut(s) 52, 80, 211, 243
CviKI_1 RGCY 4 cut(s) 52, 80, 211, 243
DinI GGCGCC 1 cut(s) 97
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 213
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
FaeI CATG 2 cut(s) 18, 91
FaiI YATR 2 cut(s) 16, 89
FatI CATG 2 cut(s) 14, 87
FauI CCCGC 2 cut(s) 124, 241
Fnu4HI GCNGC 2 cut(s) 153, 217
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 153, 217
GlaI GCGC 1 cut(s) 97
GluI GCNGC 2 cut(s) 153, 217
GsaI CCCAGC 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 99
HapII CCGG 2 cut(s) 83, 180
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 2 cut(s) 18, 91
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HpaII CCGG 2 cut(s) 83, 180
Hpy188I TCNGA 4 cut(s) 66, 199, 247, 275
Hpy99I CGWCG 2 cut(s) 77, 251
HpyCH4III ACNGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 158
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 2 cut(s) 18, 91
HspAI GCGC 1 cut(s) 96
KasI GGCGCC 1 cut(s) 95
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 3 cut(s) 67, 85, 248
LpnPI CCDG 7 cut(s) 72, 96, 193, 205, 226, 250, 269
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 1 cut(s) 212
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 137
Mly113I GGCGCC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 5 cut(s) 70, 97, 120, 215, 239
MspA1I CMGCKG 1 cut(s) 219
MspI CCGG 2 cut(s) 83, 180
MspR9I CCNGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 93, 158
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 1 cut(s) 84
NdeII GATC 1 cut(s) 225
NlaIII CATG 2 cut(s) 18, 91
NlaIV GGNNCC 4 cut(s) 81, 97, 108, 244
NmuCI GTSAC 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 206
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 154, 218
PluTI GGCGCC 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 219
PspN4I GGNNCC 4 cut(s) 81, 97, 108, 244
PspXI VCTCGAGB 1 cut(s) 206
PsuI RGATCY 1 cut(s) 225
PsyI GACNNNGTC 1 cut(s) 167
SatI GCNGC 2 cut(s) 153, 217
Sau3AI GATC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 213
SetI ASST 2 cut(s) 108, 207
SfoI GGCGCC 1 cut(s) 97
Sfr274I CTCGAG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 137
SsiI CCGC 5 cut(s) 117, 153, 159, 217, 234
SspDI GGCGCC 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 3 cut(s) 75, 112, 207
TaqII GACCGA 1 cut(s) 136
TasI AATT 1 cut(s) 137
TauI GCSGC 2 cut(s) 155, 219
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 244
Tth111I GACNNNGTC 1 cut(s) 167
XapI RAATTY 1 cut(s) 137
XhoI CTCGAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.