RchiOBHm_Chr7g0208331

13-prostaglandin reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016611
Physical Location & Seq
Forward (+)
25756558 .. 25757152
595 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18645

Sequence Viewer

Length: 288 bp
ATGGGTCTTTTCTTCTGGCGGAAAGGCAGCGACTCCAAAGCCGAAACGAAGCCCAACCCGAACCCGAACCCGGATCCGAAACCGGTTGAGGTTCCGGGCATGAACGGCGCCGTTGAGGTCCCACGGCCCGCCAAAGTCACCGTCTTTGAATTCGGGTCGGTCGCCGCTTCCGCAGATAAGGTCACTCTCGCCGGGTACTGCCCCGTCTCGGAGGAGCTCGAGCCCTGCCGCTGGGAGATCCTCTCCGCGAGTGGCTCCGACGCGCCGCAGTTCCGCGTGGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.24

Weight (kDa)

5.05

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016611)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59840
malus_domestica MD16G1269400.v1.1
prunus_persica Prupe.5G046200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208331
rosa_laevigata RLG00000003226
rosa_multiflora Rmu_sc0000841.1_g000010 Rmu_sc0007869.1_g000030
rosa_roxburghii Rroxscaffold_3G00250560
rosa_rugosa Rorug07G0103500
rosa_samantha Rh7AG237800 Rh7BG233400 Rh7CG253500 Rh7DG243800
rosa_wichuraiana Rw7G020270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 3 cut(s) 248, 263, 276
AciI CCGC 8 cut(s) 19, 129, 165, 171, 229, 246, 266, 274
AclWI GGATC 3 cut(s) 68, 81, 232
AcsI RAATTY 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 3 cut(s) 70, 208, 231
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 3 cut(s) 68, 81, 232
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AsiGI ACCGGT 1 cut(s) 82
AspLEI GCGC 2 cut(s) 110, 265
AspS9I GGNCC 2 cut(s) 118, 126
AsuC2I CCSGG 3 cut(s) 71, 96, 193
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 118
BamHI GGATCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 219, 225
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 39
BceAI ACGGC 3 cut(s) 95, 121, 140
BcnI CCSGG 3 cut(s) 71, 96, 193
BcoDI GTCTC 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 4 cut(s) 28, 165, 229, 266
BlsI GCNGC 4 cut(s) 29, 166, 230, 267
Bme1390I CCNGG 3 cut(s) 71, 96, 193
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 118, 126
BmiI GGNNCC 5 cut(s) 75, 93, 109, 120, 256
BmrFI CCNGG 3 cut(s) 71, 96, 193
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpuMI CCSGG 3 cut(s) 71, 96, 193
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 208, 231
Bse118I RCCGGY 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 122
BseLI CCNNNNNNNGG 3 cut(s) 70, 208, 231
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 231
Bsh1236I CGCG 3 cut(s) 248, 263, 276
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 4 cut(s) 71, 83, 95, 192
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 70, 208, 231
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 219, 225
Bsp143I GATC 2 cut(s) 73, 237
BspACI CCGC 8 cut(s) 19, 129, 165, 171, 229, 246, 266, 274
BspANI GGCC 1 cut(s) 127
BspFNI CGCG 3 cut(s) 248, 263, 276
BspLI GGNNCC 5 cut(s) 75, 93, 109, 120, 256
BspPI GGATC 3 cut(s) 68, 81, 232
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 2 cut(s) 73, 237
BssNI GRCGYC 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 122
BstFNI CGCG 3 cut(s) 248, 263, 276
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 265
BstKTI GATC 2 cut(s) 76, 240
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 73, 237
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 105, 170
BstSCI CCNGG 3 cut(s) 69, 94, 191
BstUI CGCG 3 cut(s) 248, 263, 276
BstV1I GCAGC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 73, 237
BstYI RGATCY 2 cut(s) 73, 237
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 2 cut(s) 110, 265
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 118, 126
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 196
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 1 cut(s) 100
CviJI RGCY 6 cut(s) 41, 52, 127, 217, 223, 255
CviKI_1 RGCY 6 cut(s) 41, 52, 127, 217, 223, 255
CviQI GTAC 1 cut(s) 196
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 75, 239
DpnII GATC 2 cut(s) 73, 237
EciI GGCGGA 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 219, 225
Eco47I GGWCC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 149
EcoT38I GRGCYC 2 cut(s) 219, 225
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 4 cut(s) 28, 165, 229, 266
FriOI GRGCYC 2 cut(s) 219, 225
Fsp4HI GCNGC 4 cut(s) 28, 165, 229, 266
GlaI GCGC 2 cut(s) 109, 264
GluI GCNGC 4 cut(s) 28, 165, 229, 266
GsaI CCCAGC 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 127
HapII CCGG 4 cut(s) 71, 83, 95, 192
HgaI GACGC 1 cut(s) 269
HhaI GCGC 2 cut(s) 110, 265
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 2 cut(s) 108, 263
HinP1I GCGC 2 cut(s) 108, 263
HinfI GANTC 1 cut(s) 32
HpaII CCGG 4 cut(s) 71, 83, 95, 192
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 4 cut(s) 78, 211, 259, 287
Hpy99I CGWCG 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 170
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 2 cut(s) 108, 263
KasI GGCGCC 1 cut(s) 107
Kzo9I GATC 2 cut(s) 73, 237
LmnI GCTCC 2 cut(s) 214, 260
LpnPI CCDG 6 cut(s) 84, 96, 108, 205, 217, 238
Lsp1109I GCAGC 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 136, 181
MalI GATC 2 cut(s) 75, 239
MboI GATC 2 cut(s) 73, 237
MboII GAAGA 1 cut(s) 4
MflI RGATCY 2 cut(s) 73, 237
MhlI GDGCHC 2 cut(s) 219, 225
MluCI AATT 1 cut(s) 149
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 4 cut(s) 82, 109, 205, 251
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 4 cut(s) 71, 83, 95, 192
MspR9I CCNGG 3 cut(s) 71, 96, 193
MvnI CGCG 3 cut(s) 248, 263, 276
MwoI GCNNNNNNNGC 2 cut(s) 105, 170
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 3 cut(s) 71, 96, 193
NdeII GATC 2 cut(s) 73, 237
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 5 cut(s) 75, 93, 109, 120, 256
NmuCI GTSAC 2 cut(s) 136, 181
PaeR7I CTCGAG 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 4 cut(s) 29, 166, 230, 267
PleI GAGTC 1 cut(s) 26
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 231
PspN4I GGNNCC 5 cut(s) 75, 93, 109, 120, 256
PspPI GGNCC 2 cut(s) 118, 126
PspPPI RGGWCCY 1 cut(s) 118
PspXI VCTCGAGB 1 cut(s) 218
PsuI RGATCY 2 cut(s) 73, 237
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SacI GAGCTC 1 cut(s) 219
SatI GCNGC 4 cut(s) 28, 165, 229, 266
Sau3AI GATC 2 cut(s) 73, 237
Sau96I GGNCC 2 cut(s) 118, 126
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 3 cut(s) 71, 96, 193
SduI GDGCHC 2 cut(s) 219, 225
SetI ASST 4 cut(s) 93, 120, 183, 219
SfoI GGCGCC 1 cut(s) 109
Sfr274I CTCGAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 149
SsiI CCGC 8 cut(s) 19, 129, 165, 171, 229, 246, 266, 274
SspDI GGCGCC 1 cut(s) 107
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 69, 94, 191
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 219
TaqII GACCGA 1 cut(s) 148
TasI AATT 1 cut(s) 149
TauI GCSGC 3 cut(s) 167, 231, 268
TseFI GTSAC 2 cut(s) 136, 181
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 2 cut(s) 136, 181
TspDTI ATGAA 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.