Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006100

Physical Location & Seq

Genomic Coordinates Reverse (-)

22570958 .. 22575310

Gene Structure 4353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGCTGCTCTATTTGCTGAAGAGAAACAATGTGTCAGCTGCCATGTTTGCTCCTGGATGGGTATATGAGACTGCACAACAACCCAATTTTAATTCGGCTCAGAATAAATGGTGGTCACTTGTCGAGAAGTCATGTGGAATAGTCCAAACTATCCACAAGTCTTCCCTTTTTACTCGGATTTCAATCAGGGCTTTGGTTACCATGTTTCACTCCAAGGTCTCCAACAGTCAGATTGTTGCTTTTAGTTTTATTCTTCACAGATGCCCCATGGTACAACATTTCTGCCAAAGTCTTCAGCCTCTCCTAGAACTCAATGAAGACAACAAGGATGTCATTCAGGCCACTCTTGATACTCGAGAGGCATCTTTTAACGGAGGAGACTACATCACTTTTAGAGGAAAACTCGAGGGAGATGCGTATTTCACAACAAGGCTCTTCAAATCCCATCTTCATCTTTCATCTTCCCCCATCACAATTTCTTTCTCTGTGACATCAGATGAAACCTCTAAACATGGAATCCTGCTTTCTTTCTCATCTCCATCACACGAGACGAAATCCATTCTCGTTTCACGACAAGAATCCATCTGTAGATTCAACAACATGTTCTTACAGTGTCTCGCCACGTCAGCGCAGACTGTATCCGAGTGGACAGTACAGGAGACAAGCCTTGTCCTGGATGATCATGTTCAGTACCAGCAGAAACCCGAGACTTTACTTCCGGCATCACCGTTGGTCATTGAAGCTCATAACATGGAGCTTGTACCCGGTTATTCTGGTTCCAAGAGCCTCAGGGTTAAGCTAGAATGGAGACAGAAAGACCTTGAAGATTCTGCATTCCCAAGGTACAATGTGTATGCGGAGAATGTAAAGTCTACTGATCTAAGACCGAGGAAGGTTCTAGAGAAGCCGAGAAGCGAAACAGTGTTTCTCGGAGTCGCTCACGTACCATCCTATTACATAGCAGAACTGGTGGTAGAATCAGACGTGAAAGGAGTCCGCTTTGTGTTCAAGCCTGTGCTAAAGATGCTACGATTCACTTATCATGGTGGGGCTGGTCGGAATCGCAATTGTCATTTCTTGCTTTCAATGATTTTGCTTGTGGGAATCGACGTGGAGTACAATGTCTCCTATGTCTACCATGCCCTAGATGCCTACATCGAGAGAGACAATGTCGGCTTGAAAGGTTTCACCAAGTTCTTTAACGATTCAAGTCTTGAAGAACGAGGTTATGCTGAGAAGTTTATGGAGTATCAGATGCATTGTTTGCGATGGAGCTTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000270 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0006022 GO:0006026 GO:0006027 GO:0006464 GO:0006491 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009253 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0015929 GO:0016052 GO:0016231 GO:0016787 GO:0016798 GO:0019538 GO:0030203 GO:0033925 GO:0035821 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044033 GO:0044035 GO:0044040 GO:0044041 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044278 GO:0044419 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051672 GO:0051704 GO:0051707 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hydro_85

Protein Analysis

427

Amino Acids

48.9

Weight (kDa)

8.07

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_85	PF03644	6 - 58	1.2e-06	Glycosyl hydrolase family 85
Ig_ENGASE1_C	PF25529	241 - 341	7.5e-15	ENGASE1-like, C-terminal immunoglobulin-like domain
Ferritin	PF00210	371 - 418	1.5e-07	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11040 AT3G11040 AT3G11040 AT3G61010 AT3G61010 AT3G61010 AT5G05460
fragaria_vesca	FvH4_7g25120 FvH4_7g25120 FvH4_7g25120 FvH4_7g25120
malus_domestica	MD01G1158000.v1.1 MD07G1226700.v1.1
prunus_persica	Prupe.2G256300_v2.0.a1
pyrus_communis	pycom01g17460 pycom01g17470 pycom07g20530
rosa_chinensis	RchiOBHm_Chr1g0370971
rosa_laevigata	RLG00000026994
rosa_multiflora	Rmu_sc0001018.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286070
rosa_rugosa	Rorug01G0360400
rosa_samantha	Rh1AG370800 Rh1BG334400 Rh1CG347700 Rh1DG365600
rosa_wichuraiana	Rw1G032630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	872, 1134
AciI	CCGC	2 cut(s)	857, 997
AcuI	CTGAAG	2 cut(s)	38, 278
AfaI	GTAC	7 cut(s)	273, 654, 692, 762, 845, 945, 1118
AfiI	CCNNNNNNNGG	1 cut(s)	673
AflIII	ACRYGT	1 cut(s)	600
AjiI	CACGTC	3 cut(s)	624, 985, 1111
AjnI	CCWGG	2 cut(s)	52, 672
AluBI	AGCT	5 cut(s)	38, 743, 757, 799, 1275
AluI	AGCT	5 cut(s)	38, 743, 757, 799, 1275
Ama87I	CYCGRG	3 cut(s)	354, 404, 704
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	4, 38
Asp700I	GAANNNNTTC	1 cut(s)	1184
AspLEI	GCGC	1 cut(s)	631
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	2 cut(s)	717, 1180
AvaI	CYCGRG	3 cut(s)	354, 404, 704
AxyI	CCTNAGG	1 cut(s)	788
BauI	CACGAG	1 cut(s)	545
BbsI	GAAGAC	3 cut(s)	153, 284, 324
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	7 cut(s)	51, 453, 476, 547, 590, 955, 1263
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	54, 674
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	1 cut(s)	765
BfaI	CTAG	4 cut(s)	305, 800, 899, 1145
BfmI	CTRYAG	1 cut(s)	586
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	2 cut(s)	5, 39
BlsI	GCNGC	2 cut(s)	6, 40
Bme1390I	CCNGG	3 cut(s)	54, 674, 765
BmeT110I	CYCGRG	3 cut(s)	354, 404, 704
BmgBI	CACGTC	3 cut(s)	624, 985, 1111
BmiI	GGNNCC	1 cut(s)	778
BmrFI	CCNGG	3 cut(s)	54, 674, 765
BmsI	GCATC	7 cut(s)	251, 371, 403, 731, 1014, 1138, 1245
BpiI	GAAGAC	3 cut(s)	153, 284, 324
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpuMI	CCSGG	1 cut(s)	765
BsaAI	YACGTR	1 cut(s)	943
BsaBI	GATNNNNATC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	4 cut(s)	213, 267, 839, 887
BsaXI	ACNNNNNCTCC	2 cut(s)	1109, 1139
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse1I	ACTGG	1 cut(s)	972
Bse21I	CCTNAGG	1 cut(s)	788
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	54, 674
BseDI	CCNNGG	4 cut(s)	213, 267, 839, 887
BseGI	GGATG	4 cut(s)	62, 334, 682, 947
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseMII	CTCAG	3 cut(s)	113, 802, 1224
BseNI	ACTGG	1 cut(s)	972
BseRI	GAGGAG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	341
BsiHKCI	CYCGRG	3 cut(s)	354, 404, 704
BsiSI	CCGG	2 cut(s)	719, 765
BslI	CCNNNNNNNGG	1 cut(s)	673
BsmBI	CGTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	3 cut(s)	354, 404, 704
Bsp143I	GATC	2 cut(s)	679, 877
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	857, 997
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	3 cut(s)	112, 801, 1225
BspLI	GGNNCC	1 cut(s)	778
BspQI	GCTCTTC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	972
BssECI	CCNNGG	4 cut(s)	213, 267, 839, 887
BssMI	GATC	2 cut(s)	679, 877
BssSI	CACGAG	1 cut(s)	545
BssT1I	CCWWGG	3 cut(s)	213, 267, 839
Bst2BI	CACGAG	1 cut(s)	545
Bst2UI	CCWGG	2 cut(s)	54, 674
Bst4CI	ACNGT	6 cut(s)	227, 612, 637, 652, 729, 922
Bst6I	CTCTTC	2 cut(s)	14, 440
BstAPI	GCANNNNNTGC	1 cut(s)	1264
BstBAI	YACGTR	1 cut(s)	943
BstC8I	GCNNGC	1 cut(s)	1277
BstDEI	CTNAG	4 cut(s)	99, 788, 881, 1233
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	196
BstF5I	GGATG	4 cut(s)	62, 334, 682, 947
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	2 cut(s)	682, 880
BstMBI	GATC	2 cut(s)	679, 877
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 47, 626, 1024, 1148, 1264
BstNI	CCWGG	2 cut(s)	54, 674
BstNSI	RCATGY	1 cut(s)	604
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	3 cut(s)	52, 672, 763
BstSFI	CTRYAG	1 cut(s)	586
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	3 cut(s)	153, 284, 324
Bsu36I	CCTNAGG	1 cut(s)	788
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	267
BtrI	CACGTC	3 cut(s)	624, 985, 1111
BtsCI	GGATG	4 cut(s)	62, 334, 682, 947
BtsIMutI	CAGTG	3 cut(s)	617, 927, 1279
Cac8I	GCNNGC	1 cut(s)	1277
CfoI	GCGC	1 cut(s)	631
Csp6I	GTAC	7 cut(s)	272, 653, 691, 761, 844, 944, 1117
CviQI	GTAC	7 cut(s)	272, 653, 691, 761, 844, 944, 1117
DdeI	CTNAG	4 cut(s)	99, 788, 881, 1233
DpnI	GATC	2 cut(s)	681, 879
DpnII	GATC	2 cut(s)	679, 877
Eam1104I	CTCTTC	2 cut(s)	14, 440
EarI	CTCTTC	2 cut(s)	14, 440
Eco130I	CCWWGG	3 cut(s)	213, 267, 839
Eco31I	GGTCTC	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	38, 278
Eco81I	CCTNAGG	1 cut(s)	788
Eco88I	CYCGRG	3 cut(s)	354, 404, 704
Eco91I	GGTNACC	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	52, 672
EcoT14I	CCWWGG	3 cut(s)	213, 267, 839
EcoT22I	ATGCAT	1 cut(s)	1260
ErhI	CCWWGG	3 cut(s)	213, 267, 839
Esp3I	CGTCTC	1 cut(s)	542
FbaI	TGATCA	1 cut(s)	679
FblI	GTMKAC	2 cut(s)	872, 1134
Fnu4HI	GCNGC	2 cut(s)	5, 39
FokI	GGATG	4 cut(s)	69, 341, 689, 934
Fsp4HI	GCNGC	2 cut(s)	5, 39
FspBI	CTAG	4 cut(s)	305, 800, 899, 1145
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	2 cut(s)	5, 39
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	2 cut(s)	719, 765
HhaI	GCGC	1 cut(s)	631
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HpaII	CCGG	2 cut(s)	719, 765
HphI	GGTGA	2 cut(s)	717, 1180
Hpy166II	GTNNAC	3 cut(s)	648, 873, 1135
Hpy188I	TCNGA	9 cut(s)	102, 177, 231, 496, 643, 932, 982, 1059, 1254
Hpy188III	TCNNGA	7 cut(s)	124, 347, 356, 570, 899, 1159, 1214
Hpy8I	GTNNAC	3 cut(s)	648, 873, 1135
Hpy99I	CGWCG	1 cut(s)	1112
HpyAV	CCTTC	1 cut(s)	886
HpyCH4III	ACNGT	6 cut(s)	227, 612, 637, 652, 729, 922
HpyCH4IV	ACGT	4 cut(s)	623, 942, 984, 1110
HpyCH4V	TGCA	4 cut(s)	74, 833, 1258, 1279
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 47, 626, 1024, 1148, 1264
HpyF3I	CTNAG	4 cut(s)	99, 788, 881, 1233
HpySE526I	ACGT	4 cut(s)	623, 942, 984, 1110
HspAI	GCGC	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	2 cut(s)	679, 877
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	3 cut(s)	55, 754, 1272
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	7 cut(s)	251, 371, 403, 731, 1014, 1138, 1245
MaeI	CTAG	4 cut(s)	305, 800, 899, 1145
MaeII	ACGT	4 cut(s)	623, 942, 984, 1110
MaeIII	GTNAC	3 cut(s)	114, 196, 487
MalI	GATC	2 cut(s)	681, 879
MboI	GATC	2 cut(s)	679, 877
MfeI	CAATTG	1 cut(s)	1066
MluCI	AATT	4 cut(s)	85, 91, 474, 1066
MlyI	GAGTC	2 cut(s)	942, 1002
MmeI	TCCRAC	2 cut(s)	246, 1037
MnlI	CCTC	9 cut(s)	309, 352, 368, 389, 400, 514, 797, 882, 1217
Mph1103I	ATGCAT	1 cut(s)	1260
MroXI	GAANNNNTTC	1 cut(s)	1184
MseI	TTAA	4 cut(s)	90, 369, 795, 1200
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	2 cut(s)	719, 765
MspR9I	CCNGG	3 cut(s)	54, 674, 765
MunI	CAATTG	1 cut(s)	1066
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	2 cut(s)	54, 674
MwoI	GCNNNNNNNGC	6 cut(s)	13, 47, 626, 1024, 1148, 1264
NciI	CCSGG	1 cut(s)	765
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	679, 877
NlaIV	GGNNCC	1 cut(s)	778
NmeAIII	GCCGAG	1 cut(s)	933
NmuCI	GTSAC	2 cut(s)	114, 487
NsiI	ATGCAT	1 cut(s)	1260
NspI	RCATGY	1 cut(s)	604
PaeR7I	CTCGAG	2 cut(s)	354, 404
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	440
PctI	GAATGC	1 cut(s)	833
PdmI	GAANNNNTTC	1 cut(s)	1184
PfeI	GAWTC	9 cut(s)	516, 578, 591, 827, 977, 1032, 1060, 1104, 1205
PflFI	GACNNNGTC	1 cut(s)	1169
PfoI	TCCNGGA	2 cut(s)	52, 672
PkrI	GCNGC	2 cut(s)	6, 40
PleI	GAGTC	2 cut(s)	941, 1001
PpsI	GAGTC	2 cut(s)	941, 1001
Ppu21I	YACGTR	1 cut(s)	943
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	52, 672
PspEI	GGTNACC	1 cut(s)	196
PspGI	CCWGG	2 cut(s)	52, 672
PspN4I	GGNNCC	1 cut(s)	778
PspXI	VCTCGAGB	1 cut(s)	404
PsyI	GACNNNGTC	1 cut(s)	1169
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	7 cut(s)	273, 654, 692, 762, 845, 945, 1118
RsaNI	GTAC	7 cut(s)	272, 653, 691, 761, 844, 944, 1117
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	4 cut(s)	90, 369, 795, 1200
SatI	GCNGC	2 cut(s)	5, 39
Sau3AI	GATC	2 cut(s)	679, 877
SchI	GAGTC	2 cut(s)	942, 1002
ScrFI	CCNGG	3 cut(s)	54, 674, 765
SfaNI	GCATC	7 cut(s)	251, 371, 403, 731, 1014, 1138, 1245
SfcI	CTRYAG	1 cut(s)	586
Sfr274I	CTCGAG	2 cut(s)	354, 404
SlaI	CTCGAG	2 cut(s)	354, 404
SmlI	CTYRAG	2 cut(s)	354, 404
SmoI	CTYRAG	2 cut(s)	354, 404
Sse9I	AATT	4 cut(s)	85, 91, 474, 1066
SsiI	CCGC	2 cut(s)	857, 997
SspMI	CTAG	4 cut(s)	305, 800, 899, 1145
StyD4I	CCNGG	3 cut(s)	52, 672, 763
StyI	CCWWGG	3 cut(s)	213, 267, 839
TaaI	ACNGT	6 cut(s)	227, 612, 637, 652, 729, 922
TaiI	ACGT	4 cut(s)	626, 945, 987, 1113
TaqI	TCGA	5 cut(s)	123, 355, 405, 1107, 1158
TaqII	GACCGA	1 cut(s)	901
TasI	AATT	4 cut(s)	85, 91, 474, 1066
TatI	WGTACW	2 cut(s)	652, 1116
TfiI	GAWTC	9 cut(s)	516, 578, 591, 827, 977, 1032, 1060, 1104, 1205
Tru1I	TTAA	4 cut(s)	90, 369, 795, 1200
Tru9I	TTAA	4 cut(s)	90, 369, 795, 1200
TscAI	CASTG	2 cut(s)	617, 927
TseFI	GTSAC	2 cut(s)	114, 487
TseI	GCWGC	2 cut(s)	4, 38
Tsp45I	GTSAC	2 cut(s)	114, 487
TspDTI	ATGAA	4 cut(s)	330, 440, 447, 513
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	617, 927
Tth111I	GACNNNGTC	1 cut(s)	1169
XbaI	TCTAGA	1 cut(s)	898
XceI	RCATGY	1 cut(s)	604
XhoI	CTCGAG	2 cut(s)	354, 404
XmiI	GTMKAC	2 cut(s)	872, 1134
XmnI	GAANNNNTTC	1 cut(s)	1184
XspI	CTAG	4 cut(s)	305, 800, 899, 1145
Zsp2I	ATGCAT	1 cut(s)	1260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.