AT3G62570

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009211
Physical Location & Seq
Forward (+)
23142485 .. 23144747
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62570.1

Sequence Viewer

Length: 1659 bp
ATGGCTATTTATTCTGTCCATAACGGCGACAAGAAACATTGGTGGTTCACTCACAAGAAGATTGTTGATAAGTACATTAAGGACGCAAGATCTTTAATGGAGAGTGAGGAGCAAAACGACGTTGCTTCAGCCATTCATTTACTAGACGCGGCTTTATCAATATCCCCGCGTTCGGAAACTGCGTTAGAACTTAAAGCCAGATCTTTGCTCTTTCTACGTCGCTTCAAAGATGTAGTTGATATGCTTCAAGATTATATCCCAAGCCTCAAGCTTGCCGTGAACGAGGAAGATGGATCTTATTCATACGAAGGTTCTTCTTACTCTTCCTCCTCTTCTCAGCTCTCCCGGAAACTTCTCTCTGACTCATCTCCTCGCCGTGACTCATCCTTCAAGTGCTTCTCTGTTTCTTACCTGAAAAAGAAAATTATGGCTGGGATTTGTAAAAATCGCGATCAAGATAAACAATGGAGATACGTTGTTTTAGGACAAGCTTGTTGCCACCTAGGATTAATGGAGGACGCATTGGTTCTTCTTCAAACCGGAAAACGTCTCGCAACAGTCGAGTTCCGCCGTCTAAGTGTAAGCTTGTCAGATGATAGCGTCTCTCTCCTCCTCTCTGAATCGTCATCATCATCATCCTCATCCTCTTATGCTTTTCCTCCACGCAAAGTCTCCGAATGCGAAACCGTCACTAACCTTCTCGCCCACACGAAAAATCTCCTCCGGCGTCGCTCCGCCGGATTCGCCGCCTTTGACGCTGGACTTTTCGCCGACTCGATACGTCACTTCTCCAAAATTCTCGACGGTCGTCGTCGTCCCGCGCCACAAGGATTCCTCGCTGATTGCTATATGCACCGCGCCGCCGCTTACAAATCCGCCGGGAAAATCGCGGAAGCGATCGCCGATTGTAATAAAACCTTAGCTCTTGAGCCGTCGTGTATCCATGCGTTGGAGACTAGAGCCACTCTTTTGGAAACGGTTCGGTGTCTACCGGATTCGCTTCACGATTTAGAGCATTTGAAGATACTCTACAACACTATCTTACGTGATCGGAAACTTCCCGGACCACCGTGGAAACGACACAATGTGAAATACAGAGAGATACCGGGAAAGTTATGCGAACTGACGACGAAATCGAAGAAACTGAAAGCAAAAATGGCGAATGGAGAAATCGGAAACGTTGATTATTACGGATTGGTCGGAGTTAGACGCGGTTGCACGAGATCGGAGCTTGATCGAGCAAATCTCTTGCTCTGTCTCAGGCATAAACCGGACAAGGCTTTAGCATTCATGGAACGTTGCGATTTCTTCGATCAGAGTGAGATTAGTTCCGTTAAAGATCGAGCGAAGATGTCTTCTTTGTTGCTTTACCGATTGATTCAGAGAGGTTATACAGCTTTGGCGGCAGCGATAGCTGAGGAGGAACAGAGGAAGAAGATGATGGTGTTGACTCAAATGTCAACGAAAACGGTTGAAGAACATGAACCGGTTGAAAAATCCGGTTCAATTACTTTAACCGATTTTGCAGAAATTAAACCGGGGAATTCGAACGCGTACCAAGGAGTTTTCTGCCGAGATCTTGCTGCTGTTGGGAGTTTGTTATCTAGGACCGGATTTAACCAACCGATACCAATGAAATACGATGCGATCAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

552

Amino Acids

61.96

Weight (kDa)

9.17

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 280 - 313 8e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1456
AccB7I CCANNNNNTGG 1 cut(s) 949
AccI GTMKAC 1 cut(s) 988
AccII CGCG 8 cut(s) 149, 169, 450, 821, 858, 890, 1212, 1553
AclI AACGTT 2 cut(s) 1179, 1297
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 2 cut(s) 795, 1543
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 727
AdeI CACNNNGTG 1 cut(s) 1087
AfaI GTAC 2 cut(s) 74, 1556
AfiI CCNNNNNNNGG 2 cut(s) 172, 949
AflIII ACRYGT 1 cut(s) 1551
AgeI ACCGGT 1 cut(s) 1486
AgsI TTSAA 8 cut(s) 226, 248, 391, 536, 1021, 1475, 1493, 1506
AluBI AGCT 8 cut(s) 271, 340, 491, 585, 923, 1231, 1397, 1415
AluI AGCT 8 cut(s) 271, 340, 491, 585, 923, 1231, 1397, 1415
Alw26I GTCTC 5 cut(s) 554, 607, 676, 947, 1262
AlwI GGATC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 1406, 1583
ApoI RAATTY 2 cut(s) 795, 1543
AseI ATTAAT 1 cut(s) 509
AsiGI ACCGGT 1 cut(s) 1486
AsiSI GCGATCGC 1 cut(s) 900
Asp700I GAANNNNTTC 1 cut(s) 978
AspA2I CCTAGG 1 cut(s) 502
AspLEI GCGC 2 cut(s) 823, 860
AspS9I GGNCC 2 cut(s) 1064, 1608
AsuC2I CCSGG 5 cut(s) 346, 880, 1062, 1107, 1539
AsuII TTCGAA 1 cut(s) 1547
AvaII GGWCC 2 cut(s) 1064, 1608
AvrII CCTAGG 1 cut(s) 502
BarI GAAGNNNNNNTAC 2 cut(s) 1013, 1045
BauI CACGAG 1 cut(s) 1219
BbsI GAAGAC 1 cut(s) 1347
BbvCI CCTCAGC 1 cut(s) 1416
BbvI GCAGC 2 cut(s) 1418, 1570
BccI CCATC 2 cut(s) 284, 1435
BceAI ACGGC 5 cut(s) 40, 260, 360, 555, 916
BciVI GTATCC 1 cut(s) 950
BcnI CCSGG 5 cut(s) 346, 880, 1062, 1107, 1539
BcoDI GTCTC 5 cut(s) 554, 607, 676, 947, 1262
BfaI CTAG 4 cut(s) 143, 503, 957, 1605
BfuI GTATCC 1 cut(s) 950
BglII AGATCT 3 cut(s) 89, 200, 1576
BisI GCNGC 7 cut(s) 150, 747, 861, 864, 1404, 1407, 1584
BlnI CCTAGG 1 cut(s) 502
BlsI GCNGC 7 cut(s) 151, 748, 862, 865, 1405, 1408, 1585
Bme1390I CCNGG 5 cut(s) 346, 880, 1062, 1107, 1539
Bme18I GGWCC 2 cut(s) 1064, 1608
BmgT120I GGNCC 2 cut(s) 1064, 1608
BmrFI CCNGG 5 cut(s) 346, 880, 1062, 1107, 1539
BmsI GCATC 1 cut(s) 1633
BoxI GACNNNNGTC 1 cut(s) 807
BpiI GAAGAC 1 cut(s) 1347
BplI GAGNNNNNCTC 2 cut(s) 1230, 1262
Bpu10I CCTNAGC 2 cut(s) 919, 1416
Bpu14I TTCGAA 1 cut(s) 1547
BpuEI CTTGAG 2 cut(s) 251, 947
BpuMI CCSGG 5 cut(s) 346, 880, 1062, 1107, 1539
BsaAI YACGTR 1 cut(s) 1046
BsaHI GRCGYC 1 cut(s) 727
BsaJI CCNNGG 4 cut(s) 502, 1070, 1538, 1558
BsaWI WCCGGW 6 cut(s) 539, 991, 1270, 1486, 1499, 1610
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 949
Bse118I RCCGGY 1 cut(s) 1486
BseDI CCNNGG 4 cut(s) 502, 1070, 1538, 1558
BseGI GGATG 3 cut(s) 383, 635, 641
BseLI CCNNNNNNNGG 2 cut(s) 172, 949
BseMII CTCAG 3 cut(s) 350, 1273, 1407
BseRI GAGGAG 7 cut(s) 122, 319, 360, 599, 602, 710, 1433
BseXI GCAGC 2 cut(s) 1418, 1570
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 8 cut(s) 149, 169, 450, 821, 858, 890, 1212, 1553
Bsh1285I CGRYCG 2 cut(s) 808, 900
BshTI ACCGGT 1 cut(s) 1486
BsiEI CGRYCG 2 cut(s) 808, 900
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 2 cut(s) 172, 949
BsmAI GTCTC 5 cut(s) 554, 607, 676, 947, 1262
BsmBI CGTCTC 2 cut(s) 554, 607
BsmFI GGGAC 1 cut(s) 801
BsmI GAATGC 2 cut(s) 683, 1286
Bsp119I TTCGAA 1 cut(s) 1547
Bsp68I TCGCGA 1 cut(s) 450
BspCNI CTCAG 3 cut(s) 349, 1272, 1408
BspFNI CGCG 8 cut(s) 149, 169, 450, 821, 858, 890, 1212, 1553
BspPI GGATC 1 cut(s) 301
BspT104I TTCGAA 1 cut(s) 1547
BsrFI RCCGGY 1 cut(s) 1486
BssAI RCCGGY 1 cut(s) 1486
BssECI CCNNGG 4 cut(s) 502, 1070, 1538, 1558
BssNI GRCGYC 1 cut(s) 727
BssSI CACGAG 1 cut(s) 1219
BssT1I CCWWGG 2 cut(s) 502, 1558
Bst2BI CACGAG 1 cut(s) 1219
Bst4CI ACNGT 6 cut(s) 559, 688, 806, 979, 1071, 1471
Bst6I CTCTTC 2 cut(s) 328, 337
BstACI GRCGYC 1 cut(s) 727
BstBAI YACGTR 1 cut(s) 1046
BstBI TTCGAA 1 cut(s) 1547
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 5 cut(s) 336, 575, 919, 1259, 1416
BstDSI CCRYGG 1 cut(s) 1070
BstF5I GGATG 3 cut(s) 383, 635, 641
BstFNI CGCG 8 cut(s) 149, 169, 450, 821, 858, 890, 1212, 1553
BstHHI GCGC 2 cut(s) 823, 860
BstMAI GTCTC 5 cut(s) 554, 607, 676, 947, 1262
BstMCI CGRYCG 2 cut(s) 808, 900
BstMWI GCNNNNNNNGC 5 cut(s) 743, 755, 1157, 1403, 1412
BstPAI GACNNNNGTC 1 cut(s) 807
BstSCI CCNGG 5 cut(s) 344, 878, 1060, 1105, 1537
BstUI CGCG 8 cut(s) 149, 169, 450, 821, 858, 890, 1212, 1553
BstV1I GCAGC 2 cut(s) 1418, 1570
BstV2I GAAGAC 1 cut(s) 1347
BstX2I RGATCY 4 cut(s) 89, 200, 293, 1576
BstXI CCANNNNNNTGG 1 cut(s) 970
BstYI RGATCY 4 cut(s) 89, 200, 293, 1576
BsuI GTATCC 1 cut(s) 950
BtgI CCRYGG 1 cut(s) 1070
BtsCI GGATG 3 cut(s) 383, 635, 641
BtuMI TCGCGA 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 2 cut(s) 823, 860
Cfr10I RCCGGY 1 cut(s) 1486
Cfr13I GGNCC 2 cut(s) 1064, 1608
CseI GACGC 7 cut(s) 92, 155, 527, 589, 716, 764, 1218
Csp6I GTAC 2 cut(s) 73, 1555
CspAI ACCGGT 1 cut(s) 1486
CviAII CATG 3 cut(s) 944, 1291, 1481
CviQI GTAC 2 cut(s) 73, 1555
DdeI CTNAG 5 cut(s) 336, 575, 919, 1259, 1416
DraIII CACNNNGTG 1 cut(s) 1087
DrdI GACNNNNNNGTC 1 cut(s) 1456
DseDI GACNNNNNNGTC 1 cut(s) 1456
Eam1104I CTCTTC 2 cut(s) 328, 337
EarI CTCTTC 2 cut(s) 328, 337
EciI GGCGGA 3 cut(s) 557, 724, 865
Eco130I CCWWGG 2 cut(s) 502, 1558
Eco47I GGWCC 2 cut(s) 1064, 1608
Eco57I CTGAAG 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 1543
EcoT14I CCWWGG 2 cut(s) 502, 1558
ErhI CCWWGG 2 cut(s) 502, 1558
Esp3I CGTCTC 2 cut(s) 554, 607
FaeI CATG 3 cut(s) 947, 1294, 1484
FaqI GGGAC 1 cut(s) 801
FatI CATG 3 cut(s) 943, 1290, 1480
FauI CCCGC 2 cut(s) 174, 826
FblI GTMKAC 1 cut(s) 988
Fnu4HI GCNGC 7 cut(s) 150, 747, 861, 864, 1404, 1407, 1584
FokI GGATG 3 cut(s) 370, 622, 628
Fsp4HI GCNGC 7 cut(s) 150, 747, 861, 864, 1404, 1407, 1584
FspBI CTAG 4 cut(s) 143, 503, 957, 1605
GlaI GCGC 2 cut(s) 822, 859
GluI GCNGC 7 cut(s) 150, 747, 861, 864, 1404, 1407, 1584
GsaI CCCAGC 1 cut(s) 435
HgaI GACGC 7 cut(s) 92, 155, 527, 589, 716, 764, 1218
HhaI GCGC 2 cut(s) 823, 860
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 3 cut(s) 947, 1294, 1484
Hin6I GCGC 2 cut(s) 821, 858
HinP1I GCGC 2 cut(s) 821, 858
HincII GTYRAC 2 cut(s) 1449, 1461
HindII GTYRAC 2 cut(s) 1449, 1461
HindIII AAGCTT 3 cut(s) 269, 489, 583
HinfI GANTC 9 cut(s) 362, 380, 620, 741, 773, 831, 995, 1378, 1450
Hpy166II GTNNAC 5 cut(s) 48, 280, 989, 1449, 1461
Hpy188III TCNNGA 6 cut(s) 248, 449, 455, 800, 926, 1004
Hpy8I GTNNAC 5 cut(s) 48, 280, 989, 1449, 1461
Hpy99I CGWCG 8 cut(s) 122, 222, 732, 806, 813, 816, 937, 1132
HpyAV CCTTC 3 cut(s) 302, 397, 707
HpyCH4III ACNGT 6 cut(s) 559, 688, 806, 979, 1071, 1471
HpyCH4IV ACGT 8 cut(s) 120, 217, 474, 547, 781, 1045, 1179, 1297
HpyCH4V TGCA 3 cut(s) 853, 1218, 1526
HpyF10VI GCNNNNNNNGC 5 cut(s) 743, 755, 1157, 1403, 1412
HpyF3I CTNAG 5 cut(s) 336, 575, 919, 1259, 1416
HpySE526I ACGT 8 cut(s) 120, 217, 474, 547, 781, 1045, 1179, 1297
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 3 cut(s) 947, 1294, 1484
HspAI GCGC 2 cut(s) 821, 858
LmnI GCTCC 3 cut(s) 109, 737, 1228
Lsp1109I GCAGC 2 cut(s) 1418, 1570
LweI GCATC 1 cut(s) 1633
MaeI CTAG 4 cut(s) 143, 503, 957, 1605
MaeII ACGT 8 cut(s) 120, 217, 474, 547, 781, 1045, 1179, 1297
MaeIII GTNAC 3 cut(s) 377, 688, 782
MflI RGATCY 4 cut(s) 89, 200, 293, 1576
MluCI AATT 5 cut(s) 423, 795, 1506, 1530, 1543
MluI ACGCGT 1 cut(s) 1551
MlyI GAGTC 4 cut(s) 356, 374, 767, 1444
MmeI TCCRAC 2 cut(s) 930, 1180
MroXI GAANNNNTTC 1 cut(s) 978
MseI TTAA 9 cut(s) 78, 95, 192, 509, 1335, 1514, 1533, 1617, 1657
MspR9I CCNGG 5 cut(s) 346, 880, 1062, 1107, 1539
Mva1269I GAATGC 2 cut(s) 683, 1286
MvnI CGCG 8 cut(s) 149, 169, 450, 821, 858, 890, 1212, 1553
MwoI GCNNNNNNNGC 5 cut(s) 743, 755, 1157, 1403, 1412
NciI CCSGG 5 cut(s) 346, 880, 1062, 1107, 1539
NlaIII CATG 3 cut(s) 947, 1294, 1484
NmeAIII GCCGAG 1 cut(s) 1598
NmuCI GTSAC 3 cut(s) 377, 688, 782
NruI TCGCGA 1 cut(s) 450
NspV TTCGAA 1 cut(s) 1547
PcsI WCGNNNNNNNCGW 3 cut(s) 179, 558, 1133
PctI GAATGC 2 cut(s) 683, 1286
PdmI GAANNNNTTC 1 cut(s) 978
PfeI GAWTC 5 cut(s) 620, 741, 831, 995, 1378
PflMI CCANNNNNTGG 1 cut(s) 949
PfoI TCCNGGA 2 cut(s) 344, 1060
PinAI ACCGGT 1 cut(s) 1486
PkrI GCNGC 7 cut(s) 151, 748, 862, 865, 1405, 1408, 1585
Ple19I CGATCG 1 cut(s) 900
PleI GAGTC 4 cut(s) 356, 374, 767, 1444
PpsI GAGTC 4 cut(s) 356, 374, 767, 1444
Ppu21I YACGTR 1 cut(s) 1046
PshAI GACNNNNGTC 1 cut(s) 807
PshBI ATTAAT 1 cut(s) 509
Psp1406I AACGTT 2 cut(s) 1179, 1297
PspFI CCCAGC 1 cut(s) 431
PspPI GGNCC 2 cut(s) 1064, 1608
PsuI RGATCY 4 cut(s) 89, 200, 293, 1576
PvuI CGATCG 1 cut(s) 900
RgaI GCGATCGC 1 cut(s) 900
RruI TCGCGA 1 cut(s) 450
RsaI GTAC 2 cut(s) 74, 1556
RsaNI GTAC 2 cut(s) 73, 1555
SaqAI TTAA 9 cut(s) 78, 95, 192, 509, 1335, 1514, 1533, 1617, 1657
SatI GCNGC 7 cut(s) 150, 747, 861, 864, 1404, 1407, 1584
Sau96I GGNCC 2 cut(s) 1064, 1608
SchI GAGTC 4 cut(s) 356, 374, 767, 1444
ScrFI CCNGG 5 cut(s) 346, 880, 1062, 1107, 1539
SfaAI GCGATCGC 1 cut(s) 900
SfaNI GCATC 1 cut(s) 1633
SfuI TTCGAA 1 cut(s) 1547
SgfI GCGATCGC 1 cut(s) 900
SinI GGWCC 2 cut(s) 1064, 1608
SmlI CTYRAG 2 cut(s) 266, 926
SmoI CTYRAG 2 cut(s) 266, 926
Sse9I AATT 5 cut(s) 423, 795, 1506, 1530, 1543
SspMI CTAG 4 cut(s) 143, 503, 957, 1605
StyD4I CCNGG 5 cut(s) 344, 878, 1060, 1105, 1537
StyI CCWWGG 2 cut(s) 502, 1558
TaaI ACNGT 6 cut(s) 559, 688, 806, 979, 1071, 1471
TaiI ACGT 8 cut(s) 123, 220, 477, 550, 784, 1048, 1182, 1300
TaqI TCGA 8 cut(s) 561, 776, 801, 1136, 1237, 1311, 1342, 1547
TasI AATT 5 cut(s) 423, 795, 1506, 1530, 1543
TatI WGTACW 1 cut(s) 72
TauI GCSGC 5 cut(s) 152, 749, 863, 866, 1406
TfiI GAWTC 5 cut(s) 620, 741, 831, 995, 1378
Tru1I TTAA 9 cut(s) 78, 95, 192, 509, 1335, 1514, 1533, 1617, 1657
Tru9I TTAA 9 cut(s) 78, 95, 192, 509, 1335, 1514, 1533, 1617, 1657
TseFI GTSAC 3 cut(s) 377, 688, 782
TseI GCWGC 2 cut(s) 1406, 1583
Tsp45I GTSAC 3 cut(s) 377, 688, 782
TspDTI ATGAA 5 cut(s) 125, 291, 1279, 1497, 1649
TspGWI ACGGA 2 cut(s) 1206, 1321
Van91I CCANNNNNTGG 1 cut(s) 949
VpaK11BI GGWCC 2 cut(s) 1064, 1608
VspI ATTAAT 1 cut(s) 509
XapI RAATTY 2 cut(s) 795, 1543
XmaJI CCTAGG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 988
XmnI GAANNNNTTC 1 cut(s) 978
XspI CTAG 4 cut(s) 143, 503, 957, 1605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.