DnaJ heat shock amino-terminal domain protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47440 AT2G47440 AT3G62570 AT4G02100 |
| fragaria_vesca | FvH4_5g39440 FvH4_5g39440 |
| malus_domestica | MD03G1296600.v1.1 MD11G1316100.v1.1 |
| prunus_persica | Prupe.8G270600_v2.0.a1 Prupe.8G270600_v2.0.a1 |
| pyrus_communis | pycom03g23500 pycom11g27590 |
| rosa_chinensis | RchiOBHm_Chr7g0241751 |
| rosa_laevigata | RLG00000000547 |
| rosa_multiflora | Rmu_sc0010095.1_g000005 Rmu_sc0029163.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00218700 |
| rosa_rugosa | Rorug07G0346900 |
| rosa_samantha | Rh7AG501400 Rh7BG472700 Rh7CG517700 |
| rosa_wichuraiana | Rw7G042380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1769 |
| Acc36I | ACCTGC | 1 cut(s) | 1783 |
| AccI | GTMKAC | 1 cut(s) | 1027 |
| AccII | CGCG | 6 cut(s) | 209, 229, 657, 945, 989, 1502 |
| AclWI | GGATC | 5 cut(s) | 458, 465, 471, 980, 1143 |
| AcoI | YGGCCR | 1 cut(s) | 895 |
| AcsI | RAATTY | 1 cut(s) | 379 |
| AcuI | CTGAAG | 1 cut(s) | 1233 |
| AcyI | GRCGYC | 2 cut(s) | 144, 603 |
| AdeI | CACNNNGTG | 1 cut(s) | 1174 |
| AfaI | GTAC | 1 cut(s) | 1118 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 232, 286, 331, 598, 957, 964, 1131 |
| AjnI | CCWGG | 6 cut(s) | 231, 257, 306, 570, 921, 1095 |
| Alw21I | GWGCWC | 1 cut(s) | 1104 |
| Alw26I | GTCTC | 9 cut(s) | 22, 74, 226, 267, 390, 493, 727, 1055, 1755 |
| AlwI | GGATC | 5 cut(s) | 458, 465, 471, 980, 1143 |
| AoxI | GGCC | 9 cut(s) | 196, 517, 568, 589, 850, 864, 895, 1151, 1365 |
| ApoI | RAATTY | 1 cut(s) | 379 |
| AsiSI | GCGATCGC | 1 cut(s) | 987 |
| AspA2I | CCTAGG | 1 cut(s) | 752 |
| AspLEI | GCGC | 4 cut(s) | 231, 945, 947, 1330 |
| AspS9I | GGNCC | 4 cut(s) | 196, 568, 672, 1151 |
| AsuC2I | CCSGG | 4 cut(s) | 625, 959, 1149, 1194 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 23, 729 |
| AvaII | GGWCC | 1 cut(s) | 672 |
| AvrII | CCTAGG | 1 cut(s) | 752 |
| BamHI | GGATCC | 1 cut(s) | 463 |
| BanII | GRGCYC | 1 cut(s) | 910 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1100, 1132 |
| Bbv12I | GWGCWC | 1 cut(s) | 1104 |
| BbvCI | CCTCAGC | 1 cut(s) | 978 |
| BccI | CCATC | 7 cut(s) | 792, 816, 875, 1073, 1133, 1483, 1505 |
| BceAI | ACGGC | 3 cut(s) | 203, 547, 910 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1719, 1753 |
| BciT130I | CCWGG | 6 cut(s) | 233, 259, 308, 572, 923, 1097 |
| BcnI | CCSGG | 4 cut(s) | 625, 959, 1149, 1194 |
| BcoDI | GTCTC | 9 cut(s) | 22, 74, 226, 267, 390, 493, 727, 1055, 1755 |
| BfaI | CTAG | 2 cut(s) | 753, 1659 |
| BfmI | CTRYAG | 1 cut(s) | 1539 |
| BfuAI | ACCTGC | 1 cut(s) | 1783 |
| BlnI | CCTAGG | 1 cut(s) | 752 |
| BlpI | GCTNAGC | 1 cut(s) | 107 |
| Bme18I | GGWCC | 1 cut(s) | 672 |
| BmgT120I | GGNCC | 4 cut(s) | 196, 568, 672, 1151 |
| BmiI | GGNNCC | 3 cut(s) | 465, 907, 1152 |
| BmsI | GCATC | 1 cut(s) | 194 |
| BpmI | CTGGAG | 6 cut(s) | 254, 290, 430, 602, 1079, 1118 |
| Bpu10I | CCTNAGC | 2 cut(s) | 791, 978 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 107 |
| BpuEI | CTTGAG | 3 cut(s) | 1034, 1150, 1545 |
| BpuMI | CCSGG | 4 cut(s) | 625, 959, 1149, 1194 |
| BsaBI | GATNNNNATC | 1 cut(s) | 462 |
| BsaHI | GRCGYC | 2 cut(s) | 144, 603 |
| BsaI | GGTCTC | 2 cut(s) | 267, 1055 |
| BsaJI | CCNNGG | 6 cut(s) | 586, 606, 752, 1148, 1193, 1744 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 335, 365, 428, 458 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 232, 286, 331, 598, 957, 964, 1131 |
| Bse118I | RCCGGY | 2 cut(s) | 897, 1153 |
| Bse1I | ACTGG | 1 cut(s) | 104 |
| Bse3DI | GCAATG | 1 cut(s) | 1764 |
| Bse8I | GATNNNNATC | 1 cut(s) | 462 |
| BseBI | CCWGG | 6 cut(s) | 233, 259, 308, 572, 923, 1097 |
| BseDI | CCNNGG | 6 cut(s) | 586, 606, 752, 1148, 1193, 1744 |
| BseGI | GGATG | 5 cut(s) | 359, 762, 867, 1405, 1414 |
| BseJI | GATNNNNATC | 1 cut(s) | 462 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 232, 286, 331, 598, 957, 964, 1131 |
| BseMI | GCAATG | 1 cut(s) | 1764 |
| BseMII | CTCAG | 5 cut(s) | 121, 401, 873, 969, 1305 |
| BseNI | ACTGG | 1 cut(s) | 104 |
| BsePI | GCGCGC | 1 cut(s) | 943 |
| BseRI | GAGGAG | 8 cut(s) | 257, 343, 346, 412, 605, 1520, 1523, 1630 |
| BseX3I | CGGCCG | 1 cut(s) | 895 |
| BseYI | CCCAGC | 1 cut(s) | 320 |
| Bsh1236I | CGCG | 6 cut(s) | 209, 229, 657, 945, 989, 1502 |
| Bsh1285I | CGRYCG | 3 cut(s) | 898, 987, 1773 |
| BshFI | GGCC | 9 cut(s) | 198, 519, 570, 591, 852, 866, 897, 1153, 1367 |
| BsiEI | CGRYCG | 3 cut(s) | 898, 987, 1773 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1104 |
| BsiSI | CCGG | 8 cut(s) | 455, 624, 898, 958, 1079, 1148, 1154, 1193 |
| BslFI | GGGAC | 2 cut(s) | 981, 1588 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 232, 286, 331, 598, 957, 964, 1131 |
| BsmAI | GTCTC | 9 cut(s) | 22, 74, 226, 267, 390, 493, 727, 1055, 1755 |
| BsmBI | CGTCTC | 2 cut(s) | 226, 390 |
| BsmFI | GGGAC | 2 cut(s) | 981, 1588 |
| BsmI | GAATGC | 1 cut(s) | 647 |
| BsnI | GGCC | 9 cut(s) | 198, 519, 570, 591, 852, 866, 897, 1153, 1367 |
| Bso31I | GGTCTC | 2 cut(s) | 267, 1055 |
| Bsp1286I | GDGCHC | 2 cut(s) | 910, 1104 |
| Bsp1407I | TGTACA | 1 cut(s) | 1116 |
| Bsp143I | GATC | 8 cut(s) | 457, 463, 972, 984, 1135, 1284, 1381, 1402 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 107 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| BspANI | GGCC | 9 cut(s) | 198, 519, 570, 591, 852, 866, 897, 1153, 1367 |
| BspCNI | CTCAG | 5 cut(s) | 120, 400, 872, 970, 1306 |
| BspFNI | CGCG | 6 cut(s) | 209, 229, 657, 945, 989, 1502 |
| BspLI | GGNNCC | 3 cut(s) | 465, 907, 1152 |
| BspMAI | CTGCAG | 1 cut(s) | 1543 |
| BspMI | ACCTGC | 1 cut(s) | 1783 |
| BspPI | GGATC | 5 cut(s) | 458, 465, 471, 980, 1143 |
| BspTNI | GGTCTC | 2 cut(s) | 267, 1055 |
| BsrDI | GCAATG | 1 cut(s) | 1764 |
| BsrFI | RCCGGY | 2 cut(s) | 897, 1153 |
| BsrGI | TGTACA | 1 cut(s) | 1116 |
| BsrI | ACTGG | 1 cut(s) | 104 |
| BssAI | RCCGGY | 2 cut(s) | 897, 1153 |
| BssECI | CCNNGG | 6 cut(s) | 586, 606, 752, 1148, 1193, 1744 |
| BssHII | GCGCGC | 1 cut(s) | 943 |
| BssMI | GATC | 8 cut(s) | 457, 463, 972, 984, 1135, 1284, 1381, 1402 |
| BssNAI | GTATAC | 1 cut(s) | 1028 |
| BssNI | GRCGYC | 2 cut(s) | 144, 603 |
| BssT1I | CCWWGG | 3 cut(s) | 606, 752, 1744 |
| Bst1107I | GTATAC | 1 cut(s) | 1028 |
| Bst2UI | CCWGG | 6 cut(s) | 233, 259, 308, 572, 923, 1097 |
| Bst4CI | ACNGT | 3 cut(s) | 683, 721, 778 |
| Bst6I | CTCTTC | 2 cut(s) | 79, 730 |
| BstACI | GRCGYC | 2 cut(s) | 144, 603 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 836, 1336 |
| BstAUI | TGTACA | 1 cut(s) | 1116 |
| BstC8I | GCNNGC | 7 cut(s) | 452, 517, 850, 899, 945, 1155, 1395 |
| BstDEI | CTNAG | 6 cut(s) | 107, 387, 791, 859, 978, 1314 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 596 |
| BstF5I | GGATG | 5 cut(s) | 359, 762, 867, 1405, 1414 |
| BstFNI | CGCG | 6 cut(s) | 209, 229, 657, 945, 989, 1502 |
| BstHHI | GCGC | 4 cut(s) | 231, 945, 947, 1330 |
| BstKTI | GATC | 8 cut(s) | 460, 466, 975, 987, 1138, 1287, 1384, 1405 |
| BstMAI | GTCTC | 9 cut(s) | 22, 74, 226, 267, 390, 493, 727, 1055, 1755 |
| BstMBI | GATC | 8 cut(s) | 457, 463, 972, 984, 1135, 1284, 1381, 1402 |
| BstMCI | CGRYCG | 3 cut(s) | 898, 987, 1773 |
| BstNI | CCWGG | 6 cut(s) | 233, 259, 308, 572, 923, 1097 |
| BstNSI | RCATGY | 1 cut(s) | 940 |
| BstSFI | CTRYAG | 1 cut(s) | 1539 |
| BstUI | CGCG | 6 cut(s) | 209, 229, 657, 945, 989, 1502 |
| BstX2I | RGATCY | 1 cut(s) | 463 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 889 |
| BstYI | RGATCY | 1 cut(s) | 463 |
| BstZ17I | GTATAC | 1 cut(s) | 1028 |
| BstZI | CGGCCG | 1 cut(s) | 895 |
| BsuRI | GGCC | 9 cut(s) | 198, 519, 570, 591, 852, 866, 897, 1153, 1367 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtgZI | GCGATG | 1 cut(s) | 1483 |
| BtsCI | GGATG | 5 cut(s) | 359, 762, 867, 1405, 1414 |
| BtsIMutI | CAGTG | 1 cut(s) | 97 |
| BveI | ACCTGC | 1 cut(s) | 1783 |
| Cac8I | GCNNGC | 7 cut(s) | 452, 517, 850, 899, 945, 1155, 1395 |
| CfoI | GCGC | 4 cut(s) | 231, 945, 947, 1330 |
| Cfr10I | RCCGGY | 2 cut(s) | 897, 1153 |
| Cfr13I | GGNCC | 4 cut(s) | 196, 568, 672, 1151 |
| CseI | GACGC | 5 cut(s) | 152, 215, 611, 854, 1725 |
| Csp6I | GTAC | 1 cut(s) | 1117 |
| CviAII | CATG | 5 cut(s) | 511, 607, 937, 1091, 1577 |
| CviQI | GTAC | 1 cut(s) | 1117 |
| DdeI | CTNAG | 6 cut(s) | 107, 387, 791, 859, 978, 1314 |
| DpnI | GATC | 8 cut(s) | 459, 465, 974, 986, 1137, 1286, 1383, 1404 |
| DpnII | GATC | 8 cut(s) | 457, 463, 972, 984, 1135, 1284, 1381, 1402 |
| DraIII | CACNNNGTG | 1 cut(s) | 1174 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1769 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1769 |
| EaeI | YGGCCR | 1 cut(s) | 895 |
| EagI | CGGCCG | 1 cut(s) | 895 |
| Eam1104I | CTCTTC | 2 cut(s) | 79, 730 |
| EarI | CTCTTC | 2 cut(s) | 79, 730 |
| EciI | GGCGGA | 6 cut(s) | 266, 641, 718, 803, 860, 1412 |
| EclXI | CGGCCG | 1 cut(s) | 895 |
| Eco130I | CCWWGG | 3 cut(s) | 606, 752, 1744 |
| Eco147I | AGGCCT | 2 cut(s) | 519, 852 |
| Eco24I | GRGCYC | 1 cut(s) | 910 |
| Eco31I | GGTCTC | 2 cut(s) | 267, 1055 |
| Eco47I | GGWCC | 1 cut(s) | 672 |
| Eco52I | CGGCCG | 1 cut(s) | 895 |
| Eco57I | CTGAAG | 1 cut(s) | 1233 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 596 |
| EcoRII | CCWGG | 6 cut(s) | 231, 257, 306, 570, 921, 1095 |
| EcoT14I | CCWWGG | 3 cut(s) | 606, 752, 1744 |
| EcoT38I | GRGCYC | 1 cut(s) | 910 |
| ErhI | CCWWGG | 3 cut(s) | 606, 752, 1744 |
| Esp3I | CGTCTC | 2 cut(s) | 226, 390 |
| FaeI | CATG | 5 cut(s) | 514, 610, 940, 1094, 1580 |
| FaqI | GGGAC | 2 cut(s) | 981, 1588 |
| FatI | CATG | 5 cut(s) | 510, 606, 936, 1090, 1576 |
| FauI | CCCGC | 3 cut(s) | 234, 748, 958 |
| FauNDI | CATATG | 1 cut(s) | 665 |
| FblI | GTMKAC | 1 cut(s) | 1027 |
| FokI | GGATG | 5 cut(s) | 346, 769, 854, 1412, 1421 |
| FriOI | GRGCYC | 1 cut(s) | 910 |
| FspBI | CTAG | 2 cut(s) | 753, 1659 |
| GlaI | GCGC | 4 cut(s) | 230, 944, 946, 1329 |
| GsaI | CCCAGC | 1 cut(s) | 324 |
| GsuI | CTGGAG | 6 cut(s) | 254, 290, 430, 602, 1079, 1118 |
| HaeIII | GGCC | 9 cut(s) | 198, 519, 570, 591, 852, 866, 897, 1153, 1367 |
| HapII | CCGG | 8 cut(s) | 455, 624, 898, 958, 1079, 1148, 1154, 1193 |
| HgaI | GACGC | 5 cut(s) | 152, 215, 611, 854, 1725 |
| HhaI | GCGC | 4 cut(s) | 231, 945, 947, 1330 |
| Hin1I | GRCGYC | 2 cut(s) | 144, 603 |
| Hin1II | CATG | 5 cut(s) | 514, 610, 940, 1094, 1580 |
| Hin6I | GCGC | 4 cut(s) | 229, 943, 945, 1328 |
| HinP1I | GCGC | 4 cut(s) | 229, 943, 945, 1328 |
| HindIII | AAGCTT | 2 cut(s) | 413, 1109 |
| HinfI | GANTC | 9 cut(s) | 344, 408, 767, 918, 1003, 1189, 1415, 1622, 1634 |
| HpaII | CCGG | 8 cut(s) | 455, 624, 898, 958, 1079, 1148, 1154, 1193 |
| HphI | GGTGA | 3 cut(s) | 16, 23, 729 |
| Hpy166II | GTNNAC | 3 cut(s) | 892, 1028, 1346 |
| Hpy188I | TCNGA | 9 cut(s) | 376, 493, 676, 766, 772, 862, 1002, 1140, 1315 |
| Hpy188III | TCNNGA | 8 cut(s) | 203, 461, 619, 1013, 1058, 1129, 1406, 1626 |
| Hpy8I | GTNNAC | 3 cut(s) | 892, 1028, 1346 |
| Hpy99I | CGWCG | 6 cut(s) | 344, 680, 848, 1299, 1708, 1741 |
| HpyAV | CCTTC | 6 cut(s) | 209, 477, 481, 499, 536, 1528 |
| HpyCH4III | ACNGT | 3 cut(s) | 683, 721, 778 |
| HpyCH4IV | ACGT | 4 cut(s) | 798, 1173, 1266, 1485 |
| HpyCH4V | TGCA | 8 cut(s) | 940, 996, 1468, 1541, 1547, 1597, 1699, 1758 |
| HpyF3I | CTNAG | 6 cut(s) | 107, 387, 791, 859, 978, 1314 |
| HpySE526I | ACGT | 4 cut(s) | 798, 1173, 1266, 1485 |
| Hsp92I | GRCGYC | 2 cut(s) | 144, 603 |
| Hsp92II | CATG | 5 cut(s) | 514, 610, 940, 1094, 1580 |
| HspAI | GCGC | 4 cut(s) | 229, 943, 945, 1328 |
| KroI | GCCGGC | 2 cut(s) | 897, 1153 |
| KroNI | GCCGGC | 2 cut(s) | 899, 1155 |
| Kzo9I | GATC | 8 cut(s) | 457, 463, 972, 984, 1135, 1284, 1381, 1402 |
| LmnI | GCTCC | 4 cut(s) | 309, 810, 905, 1099 |
| LweI | GCATC | 1 cut(s) | 194 |
| MaeI | CTAG | 2 cut(s) | 753, 1659 |
| MaeII | ACGT | 4 cut(s) | 798, 1173, 1266, 1485 |
| MaeIII | GTNAC | 2 cut(s) | 578, 778 |
| MalI | GATC | 8 cut(s) | 459, 465, 974, 986, 1137, 1286, 1383, 1404 |
| MboI | GATC | 8 cut(s) | 457, 463, 972, 984, 1135, 1284, 1381, 1402 |
| MboII | GAAGA | 8 cut(s) | 54, 66, 103, 511, 514, 717, 1447, 1543 |
| MfeI | CAATTG | 1 cut(s) | 1229 |
| MflI | RGATCY | 1 cut(s) | 463 |
| MhlI | GDGCHC | 2 cut(s) | 910, 1104 |
| MluCI | AATT | 8 cut(s) | 55, 379, 1120, 1229, 1419, 1587, 1654, 1812 |
| MlyI | GAGTC | 4 cut(s) | 338, 417, 776, 997 |
| MmeI | TCCRAC | 2 cut(s) | 699, 1299 |
| MroNI | GCCGGC | 2 cut(s) | 897, 1153 |
| MseI | TTAA | 3 cut(s) | 32, 801, 1803 |
| MspA1I | CMGCKG | 4 cut(s) | 1517, 1544, 1712, 1727 |
| MspI | CCGG | 8 cut(s) | 455, 624, 898, 958, 1079, 1148, 1154, 1193 |
| MunI | CAATTG | 1 cut(s) | 1229 |
| Mva1269I | GAATGC | 1 cut(s) | 647 |
| MvaI | CCWGG | 6 cut(s) | 233, 259, 308, 572, 923, 1097 |
| MvnI | CGCG | 6 cut(s) | 209, 229, 657, 945, 989, 1502 |
| NaeI | GCCGGC | 2 cut(s) | 899, 1155 |
| NciI | CCSGG | 4 cut(s) | 625, 959, 1149, 1194 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeI | CATATG | 1 cut(s) | 665 |
| NdeII | GATC | 8 cut(s) | 457, 463, 972, 984, 1135, 1284, 1381, 1402 |
| NgoMIV | GCCGGC | 2 cut(s) | 897, 1153 |
| NlaIII | CATG | 5 cut(s) | 514, 610, 940, 1094, 1580 |
| NlaIV | GGNNCC | 3 cut(s) | 465, 907, 1152 |
| NmeAIII | GCCGAG | 2 cut(s) | 567, 1044 |
| NspI | RCATGY | 1 cut(s) | 940 |
| PauI | GCGCGC | 1 cut(s) | 943 |
| PceI | AGGCCT | 2 cut(s) | 519, 852 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 174, 840 |
| PctI | GAATGC | 1 cut(s) | 647 |
| PdiI | GCCGGC | 2 cut(s) | 899, 1155 |
| PfeI | GAWTC | 5 cut(s) | 918, 1189, 1415, 1622, 1634 |
| PflFI | GACNNNGTC | 1 cut(s) | 719 |
| PfoI | TCCNGGA | 1 cut(s) | 306 |
| Ple19I | CGATCG | 1 cut(s) | 987 |
| PleI | GAGTC | 4 cut(s) | 338, 416, 775, 997 |
| PpsI | GAGTC | 4 cut(s) | 338, 416, 775, 997 |
| Psp6I | CCWGG | 6 cut(s) | 231, 257, 306, 570, 921, 1095 |
| PspFI | CCCAGC | 1 cut(s) | 320 |
| PspGI | CCWGG | 6 cut(s) | 231, 257, 306, 570, 921, 1095 |
| PspN4I | GGNNCC | 3 cut(s) | 465, 907, 1152 |
| PspPI | GGNCC | 4 cut(s) | 196, 568, 672, 1151 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1256, 1288 |
| PstI | CTGCAG | 1 cut(s) | 1543 |
| PsuI | RGATCY | 1 cut(s) | 463 |
| PsyI | GACNNNGTC | 1 cut(s) | 719 |
| PteI | GCGCGC | 1 cut(s) | 943 |
| PvuI | CGATCG | 1 cut(s) | 987 |
| PvuII | CAGCTG | 1 cut(s) | 1544 |
| RgaI | GCGATCGC | 1 cut(s) | 987 |
| RsaI | GTAC | 1 cut(s) | 1118 |
| RsaNI | GTAC | 1 cut(s) | 1117 |
| SaqAI | TTAA | 3 cut(s) | 32, 801, 1803 |
| Sau3AI | GATC | 8 cut(s) | 457, 463, 972, 984, 1135, 1284, 1381, 1402 |
| Sau96I | GGNCC | 4 cut(s) | 196, 568, 672, 1151 |
| SchI | GAGTC | 4 cut(s) | 338, 417, 776, 997 |
| SduI | GDGCHC | 2 cut(s) | 910, 1104 |
| SfaAI | GCGATCGC | 1 cut(s) | 987 |
| SfaNI | GCATC | 1 cut(s) | 194 |
| SfcI | CTRYAG | 1 cut(s) | 1539 |
| SgfI | GCGATCGC | 1 cut(s) | 987 |
| SinI | GGWCC | 1 cut(s) | 672 |
| SmlI | CTYRAG | 3 cut(s) | 1013, 1129, 1560 |
| SmoI | CTYRAG | 3 cut(s) | 1013, 1129, 1560 |
| Sse9I | AATT | 8 cut(s) | 55, 379, 1120, 1229, 1419, 1587, 1654, 1812 |
| SseBI | AGGCCT | 2 cut(s) | 519, 852 |
| SspMI | CTAG | 2 cut(s) | 753, 1659 |
| StuI | AGGCCT | 2 cut(s) | 519, 852 |
| StyI | CCWWGG | 3 cut(s) | 606, 752, 1744 |
| TaaI | ACNGT | 3 cut(s) | 683, 721, 778 |
| TaiI | ACGT | 4 cut(s) | 801, 1176, 1269, 1488 |
| TaqI | TCGA | 4 cut(s) | 246, 843, 1307, 1627 |
| TasI | AATT | 8 cut(s) | 55, 379, 1120, 1229, 1419, 1587, 1654, 1812 |
| TatI | WGTACW | 1 cut(s) | 1116 |
| TfiI | GAWTC | 5 cut(s) | 918, 1189, 1415, 1622, 1634 |
| Tru1I | TTAA | 3 cut(s) | 32, 801, 1803 |
| Tru9I | TTAA | 3 cut(s) | 32, 801, 1803 |
| TscAI | CASTG | 1 cut(s) | 104 |
| TspDTI | ATGAA | 3 cut(s) | 48, 152, 1366 |
| TspGWI | ACGGA | 1 cut(s) | 985 |
| TspRI | CASTG | 1 cut(s) | 104 |
| Tth111I | GACNNNGTC | 1 cut(s) | 719 |
| VpaK11BI | GGWCC | 1 cut(s) | 672 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 596 |
| XapI | RAATTY | 1 cut(s) | 379 |
| XceI | RCATGY | 1 cut(s) | 940 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 328 |
| XmaJI | CCTAGG | 1 cut(s) | 752 |
| XmiI | GTMKAC | 1 cut(s) | 1027 |
| XspI | CTAG | 2 cut(s) | 753, 1659 |