FvH4_5g39440

DnaJ heat shock amino-terminal domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009211
Physical Location & Seq
Forward (+)
29125495 .. 29128849
3355 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39440.t2

Sequence Viewer

Length: 1761 bp
ATGGCTGCTTCTACTTCTCCTTGTCTCTCTTCTAATGACAAGAAGCACTGGTGGCTTAGCACTCGAAAGATTGTGGACAAGTATATCAGAGACGCCAGAAGCTTGATTGCTAGTCATGAACACAGCGAGATCGCCTCCGCTGTGGGACTACTAGACGCCGCCTTGGAAATCTCACCGCGGTTTGAACTAGCCTTGGAACTCAAAGCCAGGTCTCTGCTCTTTCTCGGCCGATTCAAGGACGTCGCCGATATGCTCCAGGACTACATTCCCAGCCTCAAAATCGCAATCGAGGACTCCTCCGGCTCAGCCGACTCTTCGTCTCAGAATCTGTCGAGGGAGCGAGTCAAGCTGCTTAACAGCAGCAACTCCTCTTCCGACTCGCTGTGTCAGGATCCATCCTTCAAGTGCTTCTCCATTTCCGACTTGAAGAAGAAAGTCATGGCAGGCCTCTGCAAAAATGGCGACAAGGAAGGGCAATGGAGGTACTTGGTTCTGGGGCAGGCTTGCTGCCATTTGGGACTCATGGAGGATGCCATGGCCCTCCTCCAAACTGGGAAACGCCTTGCTGCTGCCGCATTCCGCCGCGAGAGCACTAGCTTAACCGACGACAGTTTCTCCTTCCCCAATTTTTTCAACAACACTTCCTCCTCCTCCTCCAACAATGCACCCTCAACGCCGCCGCGGACCATAACTGAGACTGAGACCGTCACACACCTCCTCAGCCATATCAAGCAGCTCCTCCGCCGCAGAACTGCTGCCCTCGCTGCCCTTGAAGTTGGTGCATACTCGGAGTCCATCCGCCACTTCAGTAAAATCCTGGACGGCCGGCGAGGTGCACCCCAGGGATTCCTGGCCGAGTGCTACATGCAGCGCGCCTCAGCGTACAGGGCTACGGGTCGGATAGCGGAGGCCATTGCCGATTGTAATCGGACTTTGGCCCTTGACCCCAGTTGTATACAAGCATTAGACACAAGAGCTGCACTTCTTGAAACAATAAGGTGTTTGCCAGATTGCTTGCACGATCTAGAACACTTGAAGCTTTTGTACAATTCAATTTTGAGGGACCGGAAGCTTCCCGGTCCGACGTGGAAACGACACAACAATGTAAGGTACAGAGAGATTCCTGGGAAATTATGTGTTCTGACGACCAAAATACAAGAACTGAAACAGAGGGTGGCTTCGGGAGAAACAGGAAATGTGGATTACTATGCTTTGATCGGTTTAAGAAGAGGGTGTTCCAGGTCCGAGTTAGACAAAGCTTATTTATTACTGTGTTTGAGGCACAAGCCTGATAAGGCTACAGTTTTCATAGATCGTTGTGAGCTAGCTGATGATCGCGATATTGATTCGGTAAGAGACAGAGCCAAGCTATCTGCATTGTTGCTTTACAGATTGCTTCAGAAAGGTTATTCTAGTTTGAGCACCACCATTATGGACGAAGAGGCTGCCGAGAAACAGAGAAAGAAGGCTGCAGCTGCACTCCAAGCAGCTCAAGCCCAAGCACAGGCTCAAGCTCAAGCTCAGGCCGCGCAGGCTGCGGCAGCGGCTGCAATTCAAATCCAACAAACCCAAGAAGCCATGATTGAATTCGAATCCACTTCCTCAAATTTGAACTCAAATAGTAATAGGATGGTTCATTCATCCGAAGCGAAAGCCTTCCAAGGCGTGTTCTGCAGAGACATTGCAGTGGTTGGGAATTTGTTGTCGCAGGTTGGGTTTAACCGCCCAATTACAGTCAAGTACGAGGCATTGAGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

587

Amino Acids

64.71

Weight (kDa)

8.9

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 285 - 318 8.3e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 1699
AccI GTMKAC 1 cut(s) 955
AccII CGCG 6 cut(s) 178, 585, 682, 873, 1338, 1529
AclWI GGATC 2 cut(s) 386, 399
AcoI YGGCCR 3 cut(s) 226, 823, 852
AcsI RAATTY 3 cut(s) 1586, 1606, 1696
AcuI CTGAAG 2 cut(s) 790, 1382
AcyI GRCGYC 3 cut(s) 93, 156, 240
AfaI GTAC 5 cut(s) 485, 884, 1046, 1112, 1742
AfiI CCNNNNNNNGG 2 cut(s) 235, 1504
AhdI GACNNNNNGTC 1 cut(s) 316
AjiI CACGTC 1 cut(s) 1086
AjnI CCWGG 7 cut(s) 206, 255, 816, 840, 849, 1123, 1238
Alw21I GWGCWC 3 cut(s) 593, 838, 1424
Alw26I GTCTC 8 cut(s) 29, 84, 216, 324, 689, 695, 1350, 1671
Alw44I GTGCAC 1 cut(s) 834
AlwI GGATC 2 cut(s) 386, 399
AlwNI CAGNNNCTG 2 cut(s) 328, 1547
AoxI GGCC 8 cut(s) 226, 445, 537, 823, 852, 909, 936, 1524
ApaLI GTGCAC 1 cut(s) 834
ApoI RAATTY 3 cut(s) 1586, 1606, 1696
Asp700I GAANNNNTTC 1 cut(s) 1655
AspLEI GCGC 3 cut(s) 873, 875, 1531
AspS9I GGNCC 6 cut(s) 538, 684, 937, 1063, 1079, 1242
AsuC2I CCSGG 1 cut(s) 1077
AsuHPI GGTGA 1 cut(s) 165
AsuII TTCGAA 1 cut(s) 1590
AsuNHI GCTAGC 1 cut(s) 1324
AvaII GGWCC 4 cut(s) 684, 1063, 1079, 1242
BaeGI GKGCMC 1 cut(s) 838
BamHI GGATCC 1 cut(s) 391
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
Bbv12I GWGCWC 3 cut(s) 593, 838, 1424
BbvCI CCTCAGC 2 cut(s) 719, 877
BccI CCATC 3 cut(s) 403, 803, 1624
BceAI ACGGC 1 cut(s) 838
BcgI CGANNNNNNTGC 2 cut(s) 1427, 1461
BciT130I CCWGG 7 cut(s) 208, 257, 818, 842, 851, 1125, 1240
BcnI CCSGG 1 cut(s) 1077
BcoDI GTCTC 8 cut(s) 29, 84, 216, 324, 689, 695, 1350, 1671
BfaI CTAG 7 cut(s) 111, 152, 188, 594, 1025, 1325, 1413
BfmI CTRYAG 3 cut(s) 1299, 1470, 1672
BfuAI ACCTGC 1 cut(s) 1699
BglI GCCNNNNNGGC 1 cut(s) 1532
BlpI GCTNAGC 2 cut(s) 56, 304
Bme1390I CCNGG 8 cut(s) 208, 257, 818, 842, 851, 1077, 1125, 1240
Bme18I GGWCC 4 cut(s) 684, 1063, 1079, 1242
BmeRI GACNNNNNGTC 1 cut(s) 316
BmgBI CACGTC 1 cut(s) 1086
BmgT120I GGNCC 6 cut(s) 538, 684, 937, 1063, 1079, 1242
BmiI GGNNCC 2 cut(s) 393, 1064
BmrFI CCNGG 8 cut(s) 208, 257, 818, 842, 851, 1077, 1125, 1240
BmrI ACTGGG 2 cut(s) 561, 942
BmsI GCATC 1 cut(s) 520
BmtI GCTAGC 1 cut(s) 1328
BmuI ACTGGG 2 cut(s) 561, 942
BplI GAGNNNNNCTC 4 cut(s) 119, 151, 281, 313
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 3 cut(s) 719, 877, 1521
Bpu1102I GCTNAGC 2 cut(s) 56, 304
Bpu14I TTCGAA 1 cut(s) 1590
BpuEI CTTGAG 3 cut(s) 1476, 1494, 1500
BpuMI CCSGG 1 cut(s) 1077
BsaBI GATNNNNATC 1 cut(s) 924
BsaHI GRCGYC 3 cut(s) 93, 156, 240
BsaI GGTCTC 2 cut(s) 216, 695
BsaJI CCNNGG 9 cut(s) 162, 176, 192, 534, 680, 840, 841, 1124, 1660
BsaWI WCCGGW 1 cut(s) 1065
BsaXI ACNNNNNCTCC 4 cut(s) 599, 629, 629, 659
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 1504
Bse118I RCCGGY 1 cut(s) 825
Bse1I ACTGG 3 cut(s) 53, 556, 948
Bse3DI GCAATG 3 cut(s) 482, 912, 1680
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 7 cut(s) 208, 257, 818, 842, 851, 1125, 1240
BseDI CCNNGG 9 cut(s) 162, 176, 192, 534, 680, 840, 841, 1124, 1660
BseGI GGATG 5 cut(s) 395, 535, 795, 1635, 1640
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 2 cut(s) 235, 1504
BseMI GCAATG 3 cut(s) 482, 912, 1680
BseMII CTCAG 7 cut(s) 318, 335, 684, 690, 733, 891, 1535
BseNI ACTGG 3 cut(s) 53, 556, 948
BsePI GCGCGC 1 cut(s) 871
BseRI GAGGAG 8 cut(s) 286, 358, 533, 637, 640, 643, 707, 728
BseSI GKGCMC 1 cut(s) 838
BseX3I CGGCCG 2 cut(s) 226, 823
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 2 cut(s) 963, 1461
Bsh1236I CGCG 6 cut(s) 178, 585, 682, 873, 1338, 1529
Bsh1285I CGRYCG 2 cut(s) 229, 826
BshFI GGCC 8 cut(s) 228, 447, 539, 825, 854, 911, 938, 1526
BsiEI CGRYCG 2 cut(s) 229, 826
BsiHKAI GWGCWC 3 cut(s) 593, 838, 1424
BsiSI CCGG 4 cut(s) 300, 826, 1066, 1077
BslFI GGGAC 3 cut(s) 159, 531, 1076
BslI CCNNNNNNNGG 2 cut(s) 235, 1504
BsmAI GTCTC 8 cut(s) 29, 84, 216, 324, 689, 695, 1350, 1671
BsmBI CGTCTC 2 cut(s) 84, 324
BsmFI GGGAC 3 cut(s) 159, 531, 1076
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 8 cut(s) 228, 447, 539, 825, 854, 911, 938, 1526
Bso31I GGTCTC 2 cut(s) 216, 695
Bsp119I TTCGAA 1 cut(s) 1590
Bsp1286I GDGCHC 3 cut(s) 593, 838, 1424
Bsp1407I TGTACA 1 cut(s) 1044
Bsp143I GATC 6 cut(s) 129, 391, 1021, 1215, 1312, 1333
Bsp1720I GCTNAGC 2 cut(s) 56, 304
Bsp19I CCATGG 1 cut(s) 534
Bsp68I TCGCGA 1 cut(s) 1338
BspANI GGCC 8 cut(s) 228, 447, 539, 825, 854, 911, 938, 1526
BspCNI CTCAG 7 cut(s) 317, 334, 685, 691, 732, 890, 1534
BspFNI CGCG 6 cut(s) 178, 585, 682, 873, 1338, 1529
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 393, 1064
BspMAI CTGCAG 2 cut(s) 1474, 1676
BspMI ACCTGC 1 cut(s) 1699
BspOI GCTAGC 1 cut(s) 1328
BspPI GGATC 2 cut(s) 386, 399
BspT104I TTCGAA 1 cut(s) 1590
BspTNI GGTCTC 2 cut(s) 216, 695
BsrDI GCAATG 3 cut(s) 482, 912, 1680
BsrFI RCCGGY 1 cut(s) 825
BsrGI TGTACA 1 cut(s) 1044
BsrI ACTGG 3 cut(s) 53, 556, 948
BssAI RCCGGY 1 cut(s) 825
BssECI CCNNGG 9 cut(s) 162, 176, 192, 534, 680, 840, 841, 1124, 1660
BssHII GCGCGC 1 cut(s) 871
BssMI GATC 6 cut(s) 129, 391, 1021, 1215, 1312, 1333
BssNAI GTATAC 1 cut(s) 956
BssNI GRCGYC 3 cut(s) 93, 156, 240
BssT1I CCWWGG 4 cut(s) 162, 192, 534, 1660
Bst1107I GTATAC 1 cut(s) 956
Bst2UI CCWGG 7 cut(s) 208, 257, 818, 842, 851, 1125, 1240
Bst4CI ACNGT 5 cut(s) 611, 706, 1272, 1303, 1735
Bst6I CTCTTC 5 cut(s) 34, 319, 376, 1222, 1434
BstACI GRCGYC 3 cut(s) 93, 156, 240
BstAPI GCANNNNNTGC 1 cut(s) 1547
BstAUI TGTACA 1 cut(s) 1044
BstBI TTCGAA 1 cut(s) 1590
BstC8I GCNNGC 8 cut(s) 445, 501, 505, 827, 873, 1016, 1326, 1533
BstDEI CTNAG 8 cut(s) 56, 304, 321, 693, 699, 719, 877, 1521
BstDSI CCRYGG 3 cut(s) 176, 534, 680
BstF5I GGATG 5 cut(s) 395, 535, 795, 1635, 1640
BstFNI CGCG 6 cut(s) 178, 585, 682, 873, 1338, 1529
BstHHI GCGC 3 cut(s) 873, 875, 1531
BstKTI GATC 6 cut(s) 132, 394, 1024, 1218, 1315, 1336
BstMAI GTCTC 8 cut(s) 29, 84, 216, 324, 689, 695, 1350, 1671
BstMBI GATC 6 cut(s) 129, 391, 1021, 1215, 1312, 1333
BstMCI CGRYCG 2 cut(s) 229, 826
BstNI CCWGG 7 cut(s) 208, 257, 818, 842, 851, 1125, 1240
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 8 cut(s) 206, 255, 816, 840, 849, 1075, 1123, 1238
BstSFI CTRYAG 3 cut(s) 1299, 1470, 1672
BstSLI GKGCMC 1 cut(s) 838
BstUI CGCG 6 cut(s) 178, 585, 682, 873, 1338, 1529
BstX2I RGATCY 1 cut(s) 391
BstXI CCANNNNNNTGG 1 cut(s) 1432
BstYI RGATCY 1 cut(s) 391
BstZ17I GTATAC 1 cut(s) 956
BstZI CGGCCG 2 cut(s) 226, 823
BsuRI GGCC 8 cut(s) 228, 447, 539, 825, 854, 911, 938, 1526
BtgI CCRYGG 3 cut(s) 176, 534, 680
BtrI CACGTC 1 cut(s) 1086
BtsCI GGATG 5 cut(s) 395, 535, 795, 1635, 1640
BtsI GCAGTG 1 cut(s) 1692
BtsIMutI CAGTG 2 cut(s) 46, 1692
BtuMI TCGCGA 1 cut(s) 1338
BveI ACCTGC 1 cut(s) 1699
Cac8I GCNNGC 8 cut(s) 445, 501, 505, 827, 873, 1016, 1326, 1533
CaiI CAGNNNCTG 2 cut(s) 328, 1547
CciI TCATGA 1 cut(s) 115
CfoI GCGC 3 cut(s) 873, 875, 1531
Cfr10I RCCGGY 1 cut(s) 825
Cfr13I GGNCC 6 cut(s) 538, 684, 937, 1063, 1079, 1242
Cfr42I CCGCGG 2 cut(s) 179, 683
CpoI CGGWCCG 1 cut(s) 1079
CseI GACGC 2 cut(s) 101, 164
Csp6I GTAC 5 cut(s) 484, 883, 1045, 1111, 1741
CspI CGGWCCG 1 cut(s) 1079
CviAII CATG 6 cut(s) 116, 439, 523, 535, 865, 1579
CviQI GTAC 5 cut(s) 484, 883, 1045, 1111, 1741
DdeI CTNAG 8 cut(s) 56, 304, 321, 693, 699, 719, 877, 1521
DpnI GATC 6 cut(s) 131, 393, 1023, 1217, 1314, 1335
DpnII GATC 6 cut(s) 129, 391, 1021, 1215, 1312, 1333
DriI GACNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 3 cut(s) 226, 823, 852
EagI CGGCCG 2 cut(s) 226, 823
Eam1104I CTCTTC 5 cut(s) 34, 319, 376, 1222, 1434
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 5 cut(s) 34, 319, 376, 1222, 1434
EciI GGCGGA 3 cut(s) 569, 731, 788
EclXI CGGCCG 2 cut(s) 226, 823
Eco130I CCWWGG 4 cut(s) 162, 192, 534, 1660
Eco147I AGGCCT 1 cut(s) 447
Eco31I GGTCTC 2 cut(s) 216, 695
Eco47I GGWCC 4 cut(s) 684, 1063, 1079, 1242
Eco52I CGGCCG 2 cut(s) 226, 823
Eco57I CTGAAG 2 cut(s) 790, 1382
EcoRI GAATTC 1 cut(s) 1586
EcoRII CCWGG 7 cut(s) 206, 255, 816, 840, 849, 1123, 1238
EcoT14I CCWWGG 4 cut(s) 162, 192, 534, 1660
ErhI CCWWGG 4 cut(s) 162, 192, 534, 1660
Esp3I CGTCTC 2 cut(s) 84, 324
FaeI CATG 6 cut(s) 119, 442, 526, 538, 868, 1582
FaqI GGGAC 3 cut(s) 159, 531, 1076
FatI CATG 6 cut(s) 115, 438, 522, 534, 864, 1578
FblI GTMKAC 1 cut(s) 955
FokI GGATG 5 cut(s) 382, 542, 782, 1627, 1642
FspBI CTAG 7 cut(s) 111, 152, 188, 594, 1025, 1325, 1413
GlaI GCGC 3 cut(s) 872, 874, 1530
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 8 cut(s) 228, 447, 539, 825, 854, 911, 938, 1526
HapII CCGG 4 cut(s) 300, 826, 1066, 1077
HgaI GACGC 2 cut(s) 101, 164
HhaI GCGC 3 cut(s) 873, 875, 1531
Hin1I GRCGYC 3 cut(s) 93, 156, 240
Hin1II CATG 6 cut(s) 119, 442, 526, 538, 868, 1582
Hin6I GCGC 3 cut(s) 871, 873, 1529
HinP1I GCGC 3 cut(s) 871, 873, 1529
HindIII AAGCTT 4 cut(s) 100, 1037, 1070, 1257
HpaII CCGG 4 cut(s) 300, 826, 1066, 1077
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 3 cut(s) 76, 836, 956
Hpy188III TCNNGA 6 cut(s) 116, 389, 986, 1025, 1182, 1337
Hpy8I GTNNAC 3 cut(s) 76, 836, 956
Hpy99I CGWCG 3 cut(s) 245, 608, 1087
HpyAV CCTTC 5 cut(s) 409, 464, 628, 1459, 1666
HpyCH4III ACNGT 5 cut(s) 611, 706, 1272, 1303, 1735
HpyCH4IV ACGT 2 cut(s) 240, 1085
HpyF3I CTNAG 8 cut(s) 56, 304, 321, 693, 699, 719, 877, 1521
HpySE526I ACGT 2 cut(s) 240, 1085
Hsp92I GRCGYC 3 cut(s) 93, 156, 240
Hsp92II CATG 6 cut(s) 119, 442, 526, 538, 868, 1582
HspAI GCGC 3 cut(s) 871, 873, 1529
KroI GCCGGC 1 cut(s) 825
KroNI GCCGGC 1 cut(s) 827
KspI CCGCGG 2 cut(s) 179, 683
Kzo9I GATC 6 cut(s) 129, 391, 1021, 1215, 1312, 1333
LmnI GCTCC 3 cut(s) 258, 337, 741
LweI GCATC 1 cut(s) 520
MaeI CTAG 7 cut(s) 111, 152, 188, 594, 1025, 1325, 1413
MaeII ACGT 2 cut(s) 240, 1085
MaeIII GTNAC 1 cut(s) 706
MalI GATC 6 cut(s) 131, 393, 1023, 1217, 1314, 1335
MboI GATC 6 cut(s) 129, 391, 1021, 1215, 1312, 1333
MboII GAAGA 7 cut(s) 21, 306, 363, 439, 442, 1239, 1451
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 3 cut(s) 593, 838, 1424
MluCI AATT 9 cut(s) 625, 1048, 1053, 1130, 1551, 1586, 1606, 1696, 1728
MlyI GAGTC 6 cut(s) 287, 305, 351, 371, 513, 800
MmeI TCCRAC 6 cut(s) 399, 444, 681, 878, 1106, 1585
MroNI GCCGGC 1 cut(s) 825
MroXI GAANNNNTTC 1 cut(s) 1655
MseI TTAA 4 cut(s) 354, 599, 1223, 1719
MslI CAYNNNNRTG 3 cut(s) 1101, 1430, 1685
MspA1I CMGCKG 5 cut(s) 140, 178, 682, 1475, 1544
MspI CCGG 4 cut(s) 300, 826, 1066, 1077
MspR9I CCNGG 8 cut(s) 208, 257, 818, 842, 851, 1077, 1125, 1240
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 7 cut(s) 208, 257, 818, 842, 851, 1125, 1240
MvnI CGCG 6 cut(s) 178, 585, 682, 873, 1338, 1529
NaeI GCCGGC 1 cut(s) 827
NciI CCSGG 1 cut(s) 1077
NcoI CCATGG 1 cut(s) 534
NdeII GATC 6 cut(s) 129, 391, 1021, 1215, 1312, 1333
NgoMIV GCCGGC 1 cut(s) 825
NheI GCTAGC 1 cut(s) 1324
NlaIII CATG 6 cut(s) 119, 442, 526, 538, 868, 1582
NlaIV GGNNCC 2 cut(s) 393, 1064
NmeAIII GCCGAG 3 cut(s) 204, 880, 1474
NmuCI GTSAC 1 cut(s) 706
NruI TCGCGA 1 cut(s) 1338
NspI RCATGY 1 cut(s) 868
NspV TTCGAA 1 cut(s) 1590
PagI TCATGA 1 cut(s) 115
PasI CCCWGGG 1 cut(s) 841
PauI GCGCGC 1 cut(s) 871
PceI AGGCCT 1 cut(s) 447
PctI GAATGC 1 cut(s) 575
PdiI GCCGGC 1 cut(s) 827
PdmI GAANNNNTTC 1 cut(s) 1655
PfeI GAWTC 6 cut(s) 231, 325, 846, 1120, 1346, 1592
PfoI TCCNGGA 2 cut(s) 255, 816
PleI GAGTC 6 cut(s) 287, 305, 350, 371, 513, 799
PpsI GAGTC 6 cut(s) 287, 305, 350, 371, 513, 799
Psp6I CCWGG 7 cut(s) 206, 255, 816, 840, 849, 1123, 1238
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 7 cut(s) 206, 255, 816, 840, 849, 1123, 1238
PspN4I GGNNCC 2 cut(s) 393, 1064
PspPI GGNCC 6 cut(s) 538, 684, 937, 1063, 1079, 1242
PstI CTGCAG 2 cut(s) 1474, 1676
PstNI CAGNNNCTG 2 cut(s) 328, 1547
PsuI RGATCY 1 cut(s) 391
PteI GCGCGC 1 cut(s) 871
PvuII CAGCTG 1 cut(s) 1475
RruI TCGCGA 1 cut(s) 1338
RsaI GTAC 5 cut(s) 485, 884, 1046, 1112, 1742
RsaNI GTAC 5 cut(s) 484, 883, 1045, 1111, 1741
RseI CAYNNNNRTG 3 cut(s) 1101, 1430, 1685
Rsr2I CGGWCCG 1 cut(s) 1079
RsrII CGGWCCG 1 cut(s) 1079
SacII CCGCGG 2 cut(s) 179, 683
SaqAI TTAA 4 cut(s) 354, 599, 1223, 1719
Sau3AI GATC 6 cut(s) 129, 391, 1021, 1215, 1312, 1333
Sau96I GGNCC 6 cut(s) 538, 684, 937, 1063, 1079, 1242
SchI GAGTC 6 cut(s) 287, 305, 351, 371, 513, 800
ScrFI CCNGG 8 cut(s) 208, 257, 818, 842, 851, 1077, 1125, 1240
SduI GDGCHC 3 cut(s) 593, 838, 1424
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 3 cut(s) 1299, 1470, 1672
Sfr303I CCGCGG 2 cut(s) 179, 683
SfuI TTCGAA 1 cut(s) 1590
SgrBI CCGCGG 2 cut(s) 179, 683
SinI GGWCC 4 cut(s) 684, 1063, 1079, 1242
SmiMI CAYNNNNRTG 3 cut(s) 1101, 1430, 1685
SmlI CTYRAG 3 cut(s) 1491, 1509, 1515
SmoI CTYRAG 3 cut(s) 1491, 1509, 1515
Sse9I AATT 9 cut(s) 625, 1048, 1053, 1130, 1551, 1586, 1606, 1696, 1728
SseBI AGGCCT 1 cut(s) 447
SspMI CTAG 7 cut(s) 111, 152, 188, 594, 1025, 1325, 1413
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 8 cut(s) 206, 255, 816, 840, 849, 1075, 1123, 1238
StyI CCWWGG 4 cut(s) 162, 192, 534, 1660
TaaI ACNGT 5 cut(s) 611, 706, 1272, 1303, 1735
TaiI ACGT 2 cut(s) 243, 1088
TaqI TCGA 4 cut(s) 64, 288, 332, 1590
TasI AATT 9 cut(s) 625, 1048, 1053, 1130, 1551, 1586, 1606, 1696, 1728
TatI WGTACW 1 cut(s) 1044
TauI GCSGC 9 cut(s) 161, 575, 585, 679, 682, 747, 1529, 1541, 1547
TfiI GAWTC 6 cut(s) 231, 325, 846, 1120, 1346, 1592
Tru1I TTAA 4 cut(s) 354, 599, 1223, 1719
Tru9I TTAA 4 cut(s) 354, 599, 1223, 1719
TscAI CASTG 2 cut(s) 53, 1692
TseFI GTSAC 1 cut(s) 706
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 4 cut(s) 132, 1297, 1625, 1629
TspRI CASTG 2 cut(s) 53, 1692
VneI GTGCAC 1 cut(s) 834
VpaK11BI GGWCC 4 cut(s) 684, 1063, 1079, 1242
XapI RAATTY 3 cut(s) 1586, 1606, 1696
XbaI TCTAGA 1 cut(s) 1024
XceI RCATGY 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 955
XmnI GAANNNNTTC 1 cut(s) 1655
XspI CTAG 7 cut(s) 111, 152, 188, 594, 1025, 1325, 1413
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.