Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014575

Physical Location & Seq

Genomic Coordinates Reverse (-)

23257404 .. 23260480

Gene Structure 3077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGAATAGCTCGATGACGACGAGTCCAACGGCTCGAGCCTTCCTTCATCTTCACTCGTCACCATTCACTTTACGTTCGAGAAAGTCACCGTCTGGAGTTTGTCTAGTCTCGTGGCCGCCTTCTCGGTCTCGCAGGACTCGACGACTCGTTTGTATGGCCGAACCTTACCTCATTAGGAAAATGGAGTCTGTTGAGAAGACATGGAAGGAGTTATCGGTGAAACTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATGTCGGAGCTTGACGAGGTTGTAACAGTCTTCAGAAGATTCAAGGACTGTGAGAAGCAGTTACTAGAAAGCAAAGTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATAGGAAGTGAAATCAACTCGCTCACTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGGTGTTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTTGAAGTTAGAGCAGGAACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTGTGCGGATGTATCAGAGGTACAGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGGCTGAACATGGAGGTTACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTATGAATCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACAGAAACACAGGGTCGTGTACACACTTCTACAGCAACTGTAGCCATCATGCCAGAGGCTGATGAAGTGGAAGTGGTGATTGACCCAAAGGACATTGAACTTACATCTGCAAGATCTGGCGGCGCTGGAGGCCAAAATGTGAACAAGGTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAGGAATAAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTATGAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGGTTGGGACTGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGGACAGTAGAGTGACTGATCATAGGCTAAAGATGAACTTTGCGCTTACAACATTTCTTGACGGTGCTTTAGAGGACGCAGTGCAGGCTTGTGCTGCTTTGGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTAGCTGCTTCTTCTGCTACTTCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

422

Amino Acids

47.53

Weight (kDa)

7.58

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	65 - 259	2.6e-72	PCRF domain
RF-1	PF00472	266 - 376	3.2e-36	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62910
fragaria_vesca	FvH4_2g25000
malus_domestica	MD03G1280500.v1.1 MD11G1301500.v1.1
prunus_persica	Prupe.8G255000_v2.0.a1
pyrus_communis	pycom03g22220 pycom11g26410
rosa_chinensis	RchiOBHm_Chr6g0292981
rosa_laevigata	RLG00000011977
rosa_multiflora	Rmu_sc0001788.1_g000007
rosa_roxburghii	Rroxscaffold_7G00174500
rosa_rugosa	Rorug06G0231600
rosa_samantha	Rh6AG344400 Rh6BG351700 Rh6CG358900 Rh6DG344500
rosa_wichuraiana	Rw6G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1101
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccII	CGCG	1 cut(s)	970
AciI	CCGC	3 cut(s)	116, 565, 855
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	2 cut(s)	113, 156
AcuI	CTGAAG	1 cut(s)	295
AfaI	GTAC	3 cut(s)	581, 756, 937
AfiI	CCNNNNNNNGG	2 cut(s)	268, 957
AflII	CTTAAG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	650
AgsI	TTSAA	5 cut(s)	322, 446, 509, 609, 833
AhdI	GACNNNNNGTC	1 cut(s)	21
AjiI	CACGTC	1 cut(s)	651
Alw21I	GWGCWC	1 cut(s)	1072
Alw26I	GTCTC	3 cut(s)	112, 132, 881
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	5 cut(s)	524, 629, 773, 794, 985
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	3 cut(s)	113, 156, 865
ApeKI	GCWGC	4 cut(s)	539, 591, 1196, 1244
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	4 cut(s)	591, 860, 970, 1147
AspS9I	GGNCC	1 cut(s)	948
AsuHPI	GGTGA	5 cut(s)	51, 78, 229, 566, 823
AsuII	TTCGAA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	948
BanII	GRGCYC	1 cut(s)	1072
BauI	CACGAG	1 cut(s)	109
BbsI	GAAGAC	2 cut(s)	203, 301
Bbv12I	GWGCWC	1 cut(s)	1072
BbvI	GCAGC	4 cut(s)	526, 603, 1183, 1231
BccI	CCATC	2 cut(s)	652, 788
BceAI	ACGGC	2 cut(s)	45, 906
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BclI	TGATCA	1 cut(s)	1120
BcoDI	GTCTC	3 cut(s)	112, 132, 881
BfaI	CTAG	3 cut(s)	104, 224, 344
BfmI	CTRYAG	5 cut(s)	682, 765, 774, 894, 1239
BfoI	RGCGCY	1 cut(s)	861
BfrI	CTTAAG	1 cut(s)	455
BglII	AGATCT	2 cut(s)	848, 898
BisI	GCNGC	6 cut(s)	116, 540, 592, 856, 1197, 1245
BlsI	GCNGC	6 cut(s)	117, 541, 593, 857, 1198, 1246
Bme18I	GGWCC	1 cut(s)	948
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	651
BmgT120I	GGNCC	1 cut(s)	948
BmiI	GGNNCC	1 cut(s)	950
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	2 cut(s)	203, 301
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	4 cut(s)	114, 393, 882, 1086
Bpu14I	TTCGAA	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	677
BsaI	GGTCTC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 957
Bse1I	ACTGG	4 cut(s)	273, 529, 556, 1069
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	268, 957
BseMII	CTCAG	2 cut(s)	636, 1067
BseNI	ACTGG	4 cut(s)	273, 529, 556, 1069
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	526, 603, 1183, 1231
BsgI	GTGCAG	1 cut(s)	1205
Bsh1236I	CGCG	1 cut(s)	970
BshFI	GGCC	3 cut(s)	115, 158, 867
BsiHKAI	GWGCWC	1 cut(s)	1072
BsiHKCI	CYCGRG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	1075
BslI	CCNNNNNNNGG	2 cut(s)	268, 957
BsmAI	GTCTC	3 cut(s)	112, 132, 881
BsmBI	CGTCTC	1 cut(s)	881
BsmFI	GGGAC	1 cut(s)	1075
BsnI	GGCC	3 cut(s)	115, 158, 867
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	1072
Bsp1407I	TGTACA	2 cut(s)	754, 935
Bsp143I	GATC	4 cut(s)	478, 848, 898, 1120
BspACI	CCGC	3 cut(s)	116, 565, 855
BspANI	GGCC	3 cut(s)	115, 158, 867
BspCNI	CTCAG	2 cut(s)	635, 1066
BspFNI	CGCG	1 cut(s)	970
BspLI	GGNNCC	1 cut(s)	950
BspPI	GGATC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	132
BsrGI	TGTACA	2 cut(s)	754, 935
BsrI	ACTGG	4 cut(s)	273, 529, 556, 1069
BssMI	GATC	4 cut(s)	478, 848, 898, 1120
BssSI	CACGAG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	109
Bst4CI	ACNGT	8 cut(s)	90, 307, 329, 775, 915, 999, 1109, 1166
BstAFI	CTTAAG	1 cut(s)	455
BstAUI	TGTACA	2 cut(s)	754, 935
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	5 cut(s)	587, 689, 972, 990, 1188
BstDEI	CTNAG	2 cut(s)	622, 1053
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	1 cut(s)	970
BstH2I	RGCGCY	1 cut(s)	861
BstHHI	GCGC	4 cut(s)	591, 860, 970, 1147
BstKTI	GATC	4 cut(s)	481, 851, 901, 1123
BstMAI	GTCTC	3 cut(s)	112, 132, 881
BstMBI	GATC	4 cut(s)	478, 848, 898, 1120
BstMWI	GCNNNNNNNGC	7 cut(s)	368, 591, 776, 864, 1187, 1196, 1253
BstPI	GGTNACC	1 cut(s)	554
BstSFI	CTRYAG	5 cut(s)	682, 765, 774, 894, 1239
BstUI	CGCG	1 cut(s)	970
BstV1I	GCAGC	4 cut(s)	526, 603, 1183, 1231
BstV2I	GAAGAC	2 cut(s)	203, 301
BstX2I	RGATCY	2 cut(s)	848, 898
BstYI	RGATCY	2 cut(s)	848, 898
BsuRI	GGCC	3 cut(s)	115, 158, 867
BtgZI	GCGATG	1 cut(s)	546
BtrI	CACGTC	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	573
BtsI	GCAGTG	1 cut(s)	1188
BtsIMutI	CAGTG	1 cut(s)	1188
Cac8I	GCNNGC	5 cut(s)	587, 689, 972, 990, 1188
CaiI	CAGNNNCTG	5 cut(s)	524, 629, 773, 794, 985
CfoI	GCGC	4 cut(s)	591, 860, 970, 1147
Cfr13I	GGNCC	1 cut(s)	948
CseI	GACGC	1 cut(s)	1187
Csp6I	GTAC	3 cut(s)	580, 755, 936
CviAII	CATG	6 cut(s)	201, 280, 618, 635, 784, 1219
CviQI	GTAC	3 cut(s)	580, 755, 936
DdeI	CTNAG	2 cut(s)	622, 1053
DpnI	GATC	4 cut(s)	480, 850, 900, 1122
DpnII	GATC	4 cut(s)	478, 848, 898, 1120
DriI	GACNNNNNGTC	1 cut(s)	21
EaeI	YGGCCR	2 cut(s)	113, 156
Eam1105I	GACNNNNNGTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	1070
Eco24I	GRGCYC	1 cut(s)	1072
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	948
Eco53kI	GAGCTC	1 cut(s)	1070
Eco57I	CTGAAG	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	1070
EcoO109I	RGGNCCY	1 cut(s)	948
EcoO65I	GGTNACC	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	1072
Esp3I	CGTCTC	1 cut(s)	881
FaeI	CATG	6 cut(s)	204, 283, 621, 638, 787, 1222
FalI	AAGNNNNNCTT	2 cut(s)	1124, 1156
FaqI	GGGAC	1 cut(s)	1075
FatI	CATG	6 cut(s)	200, 279, 617, 634, 783, 1218
FbaI	TGATCA	1 cut(s)	1120
Fnu4HI	GCNGC	6 cut(s)	116, 540, 592, 856, 1197, 1245
FokI	GGATG	1 cut(s)	580
FriOI	GRGCYC	1 cut(s)	1072
Fsp4HI	GCNGC	6 cut(s)	116, 540, 592, 856, 1197, 1245
FspBI	CTAG	3 cut(s)	104, 224, 344
GlaI	GCGC	4 cut(s)	590, 859, 969, 1146
GluI	GCNGC	6 cut(s)	116, 540, 592, 856, 1197, 1245
GsuI	CTGGAG	4 cut(s)	114, 393, 882, 1086
HaeII	RGCGCY	1 cut(s)	861
HaeIII	GGCC	3 cut(s)	115, 158, 867
HgaI	GACGC	1 cut(s)	1187
HhaI	GCGC	4 cut(s)	591, 860, 970, 1147
Hin1II	CATG	6 cut(s)	204, 283, 621, 638, 787, 1222
Hin6I	GCGC	4 cut(s)	589, 858, 968, 1145
HinP1I	GCGC	4 cut(s)	589, 858, 968, 1145
HinfI	GANTC	9 cut(s)	22, 136, 144, 185, 247, 318, 701, 717, 1235
HphI	GGTGA	5 cut(s)	51, 78, 229, 566, 823
Hpy166II	GTNNAC	3 cut(s)	755, 757, 877
Hpy188I	TCNGA	8 cut(s)	256, 286, 314, 478, 576, 625, 1078, 1234
Hpy188III	TCNNGA	5 cut(s)	78, 93, 485, 1160, 1263
Hpy8I	GTNNAC	3 cut(s)	755, 757, 877
Hpy99I	CGWCG	2 cut(s)	22, 144
HpyAV	CCTTC	5 cut(s)	49, 53, 129, 199, 483
HpyCH4III	ACNGT	8 cut(s)	90, 307, 329, 775, 915, 999, 1109, 1166
HpyCH4IV	ACGT	2 cut(s)	73, 650
HpyCH4V	TGCA	3 cut(s)	542, 845, 1186
HpyF10VI	GCNNNNNNNGC	7 cut(s)	368, 591, 776, 864, 1187, 1196, 1253
HpyF3I	CTNAG	2 cut(s)	622, 1053
HpySE526I	ACGT	2 cut(s)	73, 650
Hsp92II	CATG	6 cut(s)	204, 283, 621, 638, 787, 1222
HspAI	GCGC	4 cut(s)	589, 858, 968, 1145
Ksp22I	TGATCA	1 cut(s)	1120
Kzo9I	GATC	4 cut(s)	478, 848, 898, 1120
LmnI	GCTCC	4 cut(s)	286, 439, 1067, 1204
Lsp1109I	GCAGC	4 cut(s)	526, 603, 1183, 1231
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	3 cut(s)	104, 224, 344
MaeII	ACGT	2 cut(s)	73, 650
MaeIII	GTNAC	8 cut(s)	57, 84, 301, 339, 462, 554, 641, 1114
MalI	GATC	4 cut(s)	480, 850, 900, 1122
MboI	GATC	4 cut(s)	478, 848, 898, 1120
MflI	RGATCY	2 cut(s)	848, 898
MhlI	GDGCHC	1 cut(s)	1072
MluCI	AATT	3 cut(s)	432, 543, 1096
MlyI	GAGTC	6 cut(s)	31, 130, 138, 194, 726, 1244
MmeI	TCCRAC	2 cut(s)	50, 264
MseI	TTAA	2 cut(s)	456, 666
MspCI	CTTAAG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	970
MwoI	GCNNNNNNNGC	7 cut(s)	368, 591, 776, 864, 1187, 1196, 1253
NdeII	GATC	4 cut(s)	478, 848, 898, 1120
NlaIII	CATG	6 cut(s)	204, 283, 621, 638, 787, 1222
NlaIV	GGNNCC	1 cut(s)	950
NmuCI	GTSAC	4 cut(s)	57, 84, 554, 1114
NspV	TTCGAA	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	3 cut(s)	17, 136, 721
PfeI	GAWTC	3 cut(s)	247, 318, 701
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	6 cut(s)	117, 541, 593, 857, 1198, 1246
PleI	GAGTC	6 cut(s)	30, 130, 138, 193, 725, 1243
PpsI	GAGTC	6 cut(s)	30, 130, 138, 193, 725, 1243
PpuMI	RGGWCCY	1 cut(s)	948
PsiI	TTATAA	1 cut(s)	1101
Psp124BI	GAGCTC	1 cut(s)	1072
Psp5II	RGGWCCY	1 cut(s)	948
PspEI	GGTNACC	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	950
PspPI	GGNCC	1 cut(s)	948
PspPPI	RGGWCCY	1 cut(s)	948
PspXI	VCTCGAGB	1 cut(s)	33
PstNI	CAGNNNCTG	5 cut(s)	524, 629, 773, 794, 985
PsuI	RGATCY	2 cut(s)	848, 898
RsaI	GTAC	3 cut(s)	581, 756, 937
RsaNI	GTAC	3 cut(s)	580, 755, 936
SacI	GAGCTC	1 cut(s)	1072
SaqAI	TTAA	2 cut(s)	456, 666
SatI	GCNGC	6 cut(s)	116, 540, 592, 856, 1197, 1245
Sau3AI	GATC	4 cut(s)	478, 848, 898, 1120
Sau96I	GGNCC	1 cut(s)	948
SchI	GAGTC	6 cut(s)	31, 130, 138, 194, 726, 1244
SduI	GDGCHC	1 cut(s)	1072
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	5 cut(s)	682, 765, 774, 894, 1239
Sfr274I	CTCGAG	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	1 cut(s)	948
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	3 cut(s)	33, 455, 692
SmoI	CTYRAG	3 cut(s)	33, 455, 692
Sse9I	AATT	3 cut(s)	432, 543, 1096
SsiI	CCGC	3 cut(s)	116, 565, 855
SspMI	CTAG	3 cut(s)	104, 224, 344
SstI	GAGCTC	1 cut(s)	1072
TaaI	ACNGT	8 cut(s)	90, 307, 329, 775, 915, 999, 1109, 1166
TaiI	ACGT	2 cut(s)	76, 653
TaqI	TCGA	6 cut(s)	11, 34, 77, 139, 245, 715
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	432, 543, 1096
TatI	WGTACW	2 cut(s)	754, 935
TauI	GCSGC	2 cut(s)	118, 858
TfiI	GAWTC	3 cut(s)	247, 318, 701
Tru1I	TTAA	2 cut(s)	456, 666
Tru9I	TTAA	2 cut(s)	456, 666
TscAI	CASTG	1 cut(s)	1188
TseFI	GTSAC	4 cut(s)	57, 84, 554, 1114
TseI	GCWGC	4 cut(s)	539, 591, 1196, 1244
Tsp45I	GTSAC	4 cut(s)	57, 84, 554, 1114
TspRI	CASTG	1 cut(s)	1188
Van91I	CCANNNNNTGG	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	948
XhoI	CTCGAG	1 cut(s)	33
XspI	CTAG	3 cut(s)	104, 224, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.